Rv0001 - c.108C>T

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
0 Sensitive 9 RR-TB 14 HR-TB 33 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 27 Other
lineage Counts
lineage Count
lineage4.1.2 80
lineage1.1.1.1 4
lineage4.1.2;lineage4.3.3 1
lineage4.1.1.1;lineage4.1.2 2
lineage4.2.1 1
spoligotype Counts
spoligotype Count
None 88
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR13583397 MDR-TB lineage4.1.2 None
SRR29050868 Other lineage4.1.2 None
SRR13583311 Other lineage4.1.2 None
SRR29051516 Other lineage4.1.2 None
SRR13583314 HR-TB lineage4.1.2 None
SRR29051369 MDR-TB lineage4.1.2 None
SRR29051010 Pre-XDR-TB lineage4.1.2 None
SRR29050883 Pre-XDR-TB lineage4.1.2 None
ERR1034620 HR-TB lineage4.1.2 br
SRR29051302 MDR-TB lineage4.1.2 None
SRR13583342 MDR-TB lineage4.1.2 None
SRR13583434 MDR-TB lineage4.1.2 None
SRR13583455 Other lineage4.1.2 None
SRR13583340 MDR-TB lineage4.1.2 None
ERR4830428 RR-TB lineage1.1.1.1 vn
SRR13583431 MDR-TB lineage4.1.2 None
SRR13583360 MDR-TB lineage4.1.2 None
SRR29050673 Other lineage4.1.2;lineage4.3.3 None
SRR10851606 Other lineage4.1.2 None
SRR10851691 Other lineage4.1.2 None
ERR6544666 HR-TB lineage4.1.2 None
SRR9224962 Other lineage4.1.2 None
ERR6544664 Other lineage4.1.1.1;lineage4.1.2 None
SRR13583369 MDR-TB lineage4.1.2 None
ERR4830884 MDR-TB lineage4.2.1 None
SRR29231333 Other lineage4.1.2 None
SRR29051521 HR-TB lineage4.1.2 None
SRR29050712 MDR-TB lineage4.1.2 None
SRR29230822 Other lineage4.1.2 None
SRR29051360 HR-TB lineage4.1.2 None
SRR29051011 MDR-TB lineage4.1.2 None
SRR29050704 MDR-TB lineage4.1.2 None
SRR29051205 MDR-TB lineage4.1.2 None
SRR29051312 MDR-TB lineage4.1.2 None
ERR1034625 Other lineage4.1.1.1;lineage4.1.2 br
SRR29051535 MDR-TB lineage4.1.2 None
SRR13583432 MDR-TB lineage4.1.2 None
SRR29231362 Other lineage4.1.2 None
SRR10851672 Other lineage4.1.2 None
SRR29231389 Other lineage4.1.2 None
SRR29051565 MDR-TB lineage4.1.2 None
SRR29050694 Pre-XDR-TB lineage4.1.2 None
ERR6544667 MDR-TB lineage4.1.2 None
SRR29230853 Other lineage4.1.2 None
SRR29051258 Pre-XDR-TB lineage4.1.2 None
SRR13583338 MDR-TB lineage4.1.2 None
SRR29051055 MDR-TB lineage4.1.2 None
SRR29050679 MDR-TB lineage4.1.2 None
SRR29051324 RR-TB lineage4.1.2 None
SRR13583509 Other lineage4.1.2 None
SRR29051228 Other lineage4.1.2 None
SRR29050680 HR-TB lineage4.1.2 None
SRR29051300 Other lineage4.1.2 None
ERR9119450 RR-TB lineage1.1.1.1 None
SRR13583353 MDR-TB lineage4.1.2 None
SRR5067645 RR-TB lineage1.1.1.1 vn
ERR1034631 HR-TB lineage4.1.2 br
ERR6544665 HR-TB lineage4.1.2 None
SRR29050897 MDR-TB lineage4.1.2 None
SRR13583446 HR-TB lineage4.1.2 None
SRR13583402 Other lineage4.1.2 None
SRR9224981 MDR-TB lineage4.1.2 None
ERR1034627 MDR-TB lineage4.1.2 br
SRR29051024 HR-TB lineage4.1.2 None
SRR29051292 MDR-TB lineage4.1.2 None
SRR29051344 RR-TB lineage4.1.2 None
SRR13583472 Pre-XDR-TB lineage4.1.2 None
SRR29051239 HR-TB lineage4.1.2 None
SRR9224928 RR-TB lineage4.1.2 None
SRR29050707 RR-TB lineage4.1.2 None
SRR26399777 RR-TB lineage1.1.1.1 None
SRR29051035 Other lineage4.1.2 None
SRR29050678 MDR-TB lineage4.1.2 None
SRR10851620 Other lineage4.1.2 None
SRR29050896 HR-TB lineage4.1.2 None
SRR29051585 MDR-TB lineage4.1.2 None
SRR9224986 MDR-TB lineage4.1.2 None
SRR29050710 MDR-TB lineage4.1.2 None
SRR13583344 RR-TB lineage4.1.2 None
SRR29051286 MDR-TB lineage4.1.2 None
SRR29050875 HR-TB lineage4.1.2 None
SRR29231610 Other lineage4.1.2 None
SRR13583321 HR-TB lineage4.1.2 None
SRR29230801 Other lineage4.1.2 None
SRR29051278 Other lineage4.1.2 None
SRR29051514 Other lineage4.1.2 None
SRR29051315 MDR-TB lineage4.1.2 None
SRR10851692 Other lineage4.1.2 None