Rv0006 - p.Asp94Cys
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
6 Sensitive
3 RR-TB
2 HR-TB
63 MDR-TB
11 Pre-XDR-TB
3 XDR-TB
7 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 33 |
| lineage2.2.1.1 | 3 |
| lineage4.1.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.2.2 | 11 |
| lineage5.1.5 | 2 |
| lineage3 | 8 |
| lineage2.2.1.1;lineage4.3.3 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4 | 7 |
| lineage4.8 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.5 | 4 |
| lineage4.3.3 | 3 |
| lineage4.9 | 3 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage3;lineage4.3.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage2.2.1;lineage3 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 95 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5152914 | MDR-TB | lineage2.2.1 | None | ERR1035065 | Pre-XDR-TB | lineage2.2.1 | za | ERR4798248 | MDR-TB | lineage2.2.1.1 | in | SRR28351295 | HR-TB | lineage2.2.1 | None | ERR4811337 | MDR-TB | lineage2.2.1 | cn | ERR4829980 | MDR-TB | lineage4.1.3 | None | SRR25827620 | XDR-TB | lineage2.2.1 | None | ERR8975777 | MDR-TB | lineage4.1.1.3 | None | ERR1873547 | MDR-TB | lineage2.2.2 | za | ERR502508 | Pre-XDR-TB | lineage5.1.5 | gh | ERR502509 | Pre-XDR-TB | lineage5.1.5 | gh | SRR5341326 | MDR-TB | lineage3 | in | SRR5341416 | MDR-TB | lineage3 | in | SRR6824476 | MDR-TB | lineage2.2.1 | cn | SRR25827705 | MDR-TB | lineage2.2.1.1;lineage4.3.3 | None | SRR20969987 | Other | lineage2.2.1.1 | None | SAMN02350488 | MDR-TB | lineage4.3.2.1 | za | SRR28393620 | MDR-TB | lineage4 | None | ERR6866719 | RR-TB | lineage4.8 | None | SRR1173849 | MDR-TB | lineage2.2.2 | None | ERR9806887 | MDR-TB | lineage2.2.1 | None | SRR12416822 | MDR-TB | lineage2.2.1 | None | ERR9993072 | XDR-TB | lineage4.8 | None | SRR26111955 | Sensitive | lineage4.1.2.1 | None | SRR1723947 | MDR-TB | lineage4.5 | None | SRR7652969 | MDR-TB | lineage4.3.3 | None | ERR2307371 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723948 | MDR-TB | lineage4.5 | None | ERR4800099 | MDR-TB | lineage3 | None | ERR13265880 | Sensitive | lineage2.2.1 | None | SRR13870377 | MDR-TB | lineage4.3.3 | None | SAMN03246659 | MDR-TB | lineage4.5 | cn | ERR13260880 | MDR-TB | lineage2.2.2 | None | SRR10869253 | MDR-TB | lineage2.2.1 | None | SRR21764241 | Other | lineage4.9 | None | SRR1173850 | MDR-TB | lineage2.2.2 | None | SRR611415 | MDR-TB | lineage2.2.1 | None | SRR29289315 | HR-TB | lineage3 | None | ERR4797864 | MDR-TB | lineage2.2.1 | in | SRR21764255 | Other | lineage4.9 | None | ERR7911529 | MDR-TB | lineage2.2.2 | za | SRR2024997 | MDR-TB | lineage2.2.1 | cn | ERR502927 | MDR-TB | lineage2.2.1 | None | ERR4813109 | MDR-TB | lineage4 | pe | SRR25827727 | MDR-TB | lineage2.2.1 | None | ERR4821929 | Sensitive | lineage4.1.2.1 | gb | ERR2514395 | MDR-TB | lineage4 | gb | ERR4814694 | Sensitive | lineage4.1.2.1 | None | ERR9807026 | Pre-XDR-TB | lineage2.2.1 | None | SRR25534463 | Other | lineage2.2.1 | None | SRR25827875 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | SRR21277602 | Other | lineage2.2.1 | None | SRR5153829 | MDR-TB | lineage2.2.1 | None | SRR25827509 | MDR-TB | lineage2.2.1;lineage3;lineage4.3.2 | None | SRR10380170 | MDR-TB | lineage2.2.1 | None | SRR6257057 | Pre-XDR-TB | lineage2.2.1 | None | SRR4423155 | MDR-TB | lineage4 | None | SRR29914411 | MDR-TB | lineage2.2.1 | None | SRR29539097 | MDR-TB | lineage2.2.1 | None | ERR552554 | MDR-TB | lineage2.2.1 | None | SRR25207346 | MDR-TB | lineage2.2.1 | None | SRR29126167 | MDR-TB | lineage1.2.1.2.1 | None | SRR29289413 | MDR-TB | lineage3 | None | ERR13288937 | MDR-TB | lineage4.1.1.3 | None | ERR9992819 | XDR-TB | lineage2.2.2 | None | SRR14782030 | MDR-TB | lineage2.2.1 | None | SRR3085312 | Pre-XDR-TB | lineage1.1.2 | None | SRR28119773 | Other | lineage2.2.1 | None | ERR7911603 | MDR-TB | lineage2.2.2 | za | ERR4829820 | Pre-XDR-TB | lineage4.2.1 | it | SRR20969778 | Other | lineage2.2.1 | None | SRR1165246 | MDR-TB | lineage2.2.2 | None | SRR1167296 | MDR-TB | lineage2.2.2 | None | SRR5488644 | MDR-TB | lineage4.9 | None | ERR2516599 | MDR-TB | lineage4 | pe | SAMN02403478 | MDR-TB | lineage2.2.2 | za | SRR1049729 | MDR-TB | lineage4 | None | ERR11049793 | Sensitive | lineage4.1.2.1 | None | ERR2179658 | MDR-TB | lineage4.5 | cn | SRR1019167 | MDR-TB | lineage4.3.2.1 | None | SRR18715165 | MDR-TB | lineage2.2.1 | None | SRR28239727 | MDR-TB | lineage2.2.1 | None | ERR9993093 | MDR-TB | lineage4.3.3 | None | ERR13260681 | MDR-TB | lineage4 | None | SRR4423135 | MDR-TB | lineage2.2.2 | None | SRR20632774 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827363 | MDR-TB | lineage2.2.1;lineage3 | None | SRR25827370 | MDR-TB | lineage2.2.1;lineage3 | None | SRR9971369 | MDR-TB | lineage4.1.1.3 | None | ERR13290747 | RR-TB | lineage2.2.1 | None | ERR2510639 | Pre-XDR-TB | lineage3 | pk | SRR1140958 | MDR-TB | lineage4.3.2.1 | None | SRR14088379 | MDR-TB | lineage3 | None | SRR24114362 | RR-TB | lineage3 | None | SRR21277797 | Sensitive | lineage2.2.1.1 | None |
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