Rv0006 - p.Gly88Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
0 MDR-TB
129 Pre-XDR-TB
12 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 18 |
| lineage4.3.4.2 | 3 |
| lineage2.2.2 | 3 |
| lineage4.5 | 5 |
| lineage2.2.1 | 46 |
| lineage1.1.1.1 | 1 |
| lineage4.3.2.1 | 6 |
| lineage4.6.5 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.8 | 4 |
| lineage4.2.1 | 5 |
| lineage1.2.2.2 | 4 |
| lineage4.1.1.3 | 10 |
| lineage4.1.2.1 | 7 |
| lineage4.2.2 | 4 |
| lineage4.1.2 | 2 |
| lineage4.1.1.1 | 5 |
| lineage3 | 8 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.9 | 2 |
| lineage4.3.2 | 1 |
| lineage4.7 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.1 | 2 |
| lineage4 | 1 |
| lineage1.1.2 | 2 |
| lineage1.2.2.2;lineage4.8.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 152 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9992999 | XDR-TB | lineage4.3.3 | None | SRR28393330 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR1144780 | Pre-XDR-TB | lineage2.2.2 | None | SRR6824541 | Pre-XDR-TB | lineage4.5 | cn | DRR130069 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035096 | Pre-XDR-TB | lineage1.1.1.1 | vn | SRR26331614 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR29906771 | Other | lineage4.6.5 | None | DRR130178 | Pre-XDR-TB | lineage2.2.1 | None | ERR11489042 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR25827342 | Pre-XDR-TB | lineage4.8 | None | SRR10380062 | Pre-XDR-TB | lineage4.2.1 | None | ERR5917769 | Pre-XDR-TB | lineage4.3.3 | by | ERR9992971 | XDR-TB | lineage1.2.2.2 | None | SRR11567801 | Pre-XDR-TB | lineage4.5 | None | ERR9806909 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715276 | Pre-XDR-TB | lineage4.3.3 | None | SRR11972427 | Pre-XDR-TB | lineage2.2.1 | None | ERR13250164 | Pre-XDR-TB | lineage4.3.3 | None | SRR29093245 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665735 | Pre-XDR-TB | lineage4.3.3 | None | ERR13260968 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276425 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4831596 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285906 | Pre-XDR-TB | lineage4.2.1 | None | SRR12420450 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267574 | Other | lineage4.3.3 | None | SRR29273763 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR18911561 | Pre-XDR-TB | lineage4.2.2 | None | ERR5987258 | Pre-XDR-TB | lineage2.2.1 | None | SRR22248471 | HR-TB | lineage4.1.2 | None | SRR12420480 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827663 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166189 | Pre-XDR-TB | lineage4.1.2.1 | ro | SAMN02403602 | Pre-XDR-TB | lineage4.1.1.1 | za | SRR25827338 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866450 | Pre-XDR-TB | lineage2.2.1 | None | SRR28339289 | Pre-XDR-TB | lineage2.2.1 | None | ERR5897119 | Pre-XDR-TB | lineage3 | None | ERR8975847 | XDR-TB | lineage2.2.2 | None | ERR133896 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2517020 | Pre-XDR-TB | lineage3 | gb | ERR2652999 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR12420387 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811017 | Other | lineage2.2.1 | None | ERR13289323 | Pre-XDR-TB | lineage4.3.3 | None | SRR13870378 | Pre-XDR-TB | lineage4.3.3 | None | SRR7276704 | Other | lineage4.1.2 | None | ERR9993094 | XDR-TB | lineage1.2.2.2 | None | ERR2515407 | Pre-XDR-TB | lineage4.3.2.1 | za | ERR2515199 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR551721 | Other | lineage2.2.1;lineage4 | None | ERR9806710 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR1169283 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR28119769 | Other | lineage2.2.1 | None | ERR13264937 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR16115071 | Pre-XDR-TB | lineage4.2.2 | None | ERR11081546 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3014596 | Pre-XDR-TB | lineage4.3.1 | tn | ERR11043054 | Pre-XDR-TB | lineage3 | None | SRR8651581 | Pre-XDR-TB | lineage4.5 | None | ERR9806916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9120129 | Pre-XDR-TB | lineage2.2.1 | None | SRR29906788 | Other | lineage4.6.5 | None | SRR3743379 | Pre-XDR-TB | lineage4.2.1 | None | SRR29385435 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040278 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093183 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10112845 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13276244 | Pre-XDR-TB | lineage3 | None | ERR4813152 | Pre-XDR-TB | lineage4.3.3 | None | SRR15901696 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None | SRR24256151 | Pre-XDR-TB | lineage4.3.3 | None | SRR17406769 | Pre-XDR-TB | lineage4.8 | None | ERR2510350 | Pre-XDR-TB | lineage3 | pk | SRR3611839 | Pre-XDR-TB | lineage4.9 | None | ERR4798175 | Pre-XDR-TB | lineage2.2.1 | in | SRR14164398 | Other | lineage4.1.2.1 | None | ERR4797968 | Pre-XDR-TB | lineage2.2.1 | in | ERR13289513 | Pre-XDR-TB | lineage3 | None | SRR29273697 | Pre-XDR-TB | lineage4.8 | None | ERR13289463 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088412 | Pre-XDR-TB | lineage2.2.1 | None | SRR27107279 | Pre-XDR-TB | lineage4.3.3 | None | SRR9738510 | Pre-XDR-TB | lineage4.1.2.1 | None | SAMN02398712 | Pre-XDR-TB | lineage2.2.2 | kr | ERR4813212 | Pre-XDR-TB | lineage4.3.2 | pe | ERR8774569 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706485 | Other | lineage4.8 | None | SRR28394210 | Pre-XDR-TB | lineage4.7 | None | SRR25827427 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | None | ERR4809304 | XDR-TB | lineage4.3.2.1 | za | SRR2024966 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29681228 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR5866449 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675217 | Pre-XDR-TB | lineage3 | gb | SRR5709793 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709911 | Pre-XDR-TB | lineage2.2.1.1 | th | SRR27107239 | Pre-XDR-TB | lineage4.3.3 | None | SRR3610846 | Pre-XDR-TB | lineage4.9 | None | ERR10610248 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR8665744 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762278 | Pre-XDR-TB | lineage4.1 | None | SRR24827283 | Pre-XDR-TB | lineage4.2.2 | None | ERR9992611 | XDR-TB | lineage1.2.2.2 | None | SRR28351440 | XDR-TB | lineage3 | None | ERR4797391 | Pre-XDR-TB | lineage2.2.1 | in | SRR11662271 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165693 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1165707 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1169244 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR21887753 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869205 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748266 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR13292315 | Pre-XDR-TB | lineage4.2.2 | None | ERR11043224 | Other | lineage4.3.3 | None | SRR29056305 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR10762353 | Pre-XDR-TB | lineage4.2.1 | None | ERR9993260 | XDR-TB | lineage1.2.2.2 | None | SRR29055839 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285816 | Pre-XDR-TB | lineage4.1 | None | ERR13258448 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056327 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665745 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274280 | Pre-XDR-TB | lineage4 | None | ERR13261489 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055522 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665734 | Pre-XDR-TB | lineage4.3.3 | None | SRR29093191 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR14782320 | Pre-XDR-TB | lineage4.2.1 | None | SRR29385420 | Pre-XDR-TB | lineage2.2.1 | None | SRR10500315 | Pre-XDR-TB | lineage1.1.2 | None | ERR4797702 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800449 | Pre-XDR-TB | lineage2.2.1 | in | ERR9992615 | XDR-TB | lineage4.3.3 | None | ERR4799209 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798252 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799315 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796951 | Pre-XDR-TB | lineage2.2.1 | in | SRR29093193 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11465987 | XDR-TB | lineage1.2.2.2;lineage4.8.1 | None | SRR11567799 | Pre-XDR-TB | lineage4.5 | None | SRR25827402 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | SRR8651578 | Pre-XDR-TB | lineage4.5 | cn | SRR671867 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4827447 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831464 | Pre-XDR-TB | lineage1.1.2 | None | ERR12117943 | Pre-XDR-TB | lineage4.3.3 | None | ERR9120128 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911693 | Pre-XDR-TB | lineage2.2.1 | za |
|---|
