lineage | Count |
---|---|
lineage1.2.1.2.1 | 31 |
lineage2.2.1 | 51 |
lineage1.1.1.1 | 8 |
lineage2.1 | 3 |
lineage3 | 31 |
lineage2.2.1;lineage4.5 | 1 |
lineage3.1.2.1 | 3 |
lineage4.1.2.1 | 12 |
lineage1.1.2 | 17 |
lineage4 | 1 |
lineage1.1.1 | 5 |
lineage4.3.3 | 12 |
lineage2.2.1.1 | 8 |
lineage4.1.1.1 | 2 |
lineage2.2.1;lineage3 | 1 |
lineage4.5 | 6 |
lineage4.2.1.1 | 1 |
lineage4.3 | 1 |
lineage2.2.2 | 3 |
lineage4.1.2 | 1 |
lineage4.6.2.2 | 2 |
lineage4.1.1 | 3 |
lineage4.3.4.1 | 3 |
lineage4.3.4.2 | 3 |
lineage4.3.2 | 6 |
lineage4.3.4.2.1 | 3 |
lineage4.1.4 | 1 |
lineage4.4.2 | 2 |
lineage4.8 | 7 |
lineage4.9 | 3 |
lineage3.1.2 | 2 |
lineage4.6.1 | 1 |
lineage6.2.2 | 1 |
lineage4.1.1.3 | 1 |
lineage1.2.1.2 | 1 |
lineage2.2.1.2 | 2 |
lineage1.2.2.2 | 2 |
lineage4.4 | 1 |
lineage1.2.1 | 1 |
lineage4.2.1 | 1 |
lineage3.1.1 | 1 |
lineage1.1.3.1 | 1 |
spoligotype | Count |
---|---|
None | 246 |
ID | Drug resistance | Lineage | Country iso2 | SRR28868841 | Sensitive | lineage1.2.1.2.1 | None | SRR28868652 | HR-TB | lineage1.2.1.2.1 | None | SRR28859884 | Sensitive | lineage2.2.1 | None | SRR28868568 | Sensitive | lineage1.1.1.1 | None | SRR28868845 | Sensitive | lineage2.1 | None | SRR27450143 | Sensitive | lineage3 | None | SRR25827769 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR27450555 | Sensitive | lineage1.2.1.2.1 | None | SRR27450147 | Sensitive | lineage3.1.2.1 | None | SRR28860081 | Sensitive | lineage4.1.2.1 | None | SRR27450309 | Sensitive | lineage1.1.1.1 | None | SRR28868525 | Sensitive | lineage1.1.2 | None | SRR21732809 | Sensitive | lineage4 | None | SRR28868460 | Sensitive | lineage3 | None | SRR28858730 | HR-TB | lineage1.1.1 | None | SRR28868564 | Sensitive | lineage4.3.3 | None | SRR28868843 | Other | lineage3 | None | SRR28868675 | Sensitive | lineage1.1.1.1 | None | SRR21733072 | Other | lineage2.2.1.1 | None | SRR28859979 | Sensitive | lineage4.1.1.1 | None | SRR26965295 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732808 | Sensitive | lineage3 | None | SRR25827399 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR21733271 | Sensitive | lineage4.5 | None | SRR27449982 | Sensitive | lineage4.2.1.1 | None | SRR26112017 | Sensitive | lineage2.2.1 | None | SRR28859882 | Sensitive | lineage1.2.1.2.1 | None | SRR28859985 | Sensitive | lineage2.2.1 | None | SRR28868491 | Sensitive | lineage2.2.1 | None | SRR27449997 | Sensitive | lineage1.1.1 | None | SRR27450590 | Sensitive | lineage4.5 | None | SRR27450435 | Sensitive | lineage3 | None | SRR27450576 | Sensitive | lineage1.1.1 | None | SRR16088123 | Pre-XDR-TB | lineage2.2.1 | None | SRR26112562 | Sensitive | lineage4.3 | None | SRR21732812 | Sensitive | lineage2.2.2 | None | SRR27450331 | HR-TB | lineage1.2.1.2.1 | None | SRR28859638 | Sensitive | lineage3 | None | SRR28859712 | Sensitive | lineage2.2.1 | None | SRR27450003 | Sensitive | lineage1.1.1.1 | None | SRR28868541 | Sensitive | lineage3 | None | SRR28868597 | Sensitive | lineage2.2.1 | None | SRR28868830 | Sensitive | lineage1.2.1.2.1 | None | SRR28859634 | Sensitive | lineage2.2.1 | None | SRR26112374 | Sensitive | lineage2.2.1 | None | SRR28860162 | Sensitive | lineage4.1.2 | None | SRR28858698 | Sensitive | lineage4.1.2.1 | None | SRR28868828 | Sensitive | lineage1.2.1.2.1 | None | SRR28858419 | RR-TB | lineage1.2.1.2.1 | None | SRR27450592 | Sensitive | lineage3 | None | SRR27450353 | Sensitive | lineage1.2.1.2.1 | None | SRR28868588 | HR-TB | lineage1.2.1.2.1 | None | SRR27450307 | HR-TB | lineage2.2.1 | None | SRR28858546 | Sensitive | lineage4.6.2.2 | None | SRR28859939 | Sensitive | lineage4.1.1 | None | SRR28868710 | Other | lineage2.2.1 | None | SRR28868542 | Sensitive | lineage2.2.1 | None | SRR28858392 | Other | lineage4.3.3 | None | SRR28858738 | Other | lineage4.3.4.1 | None | SRR28868586 | Other | lineage4.1.2.1 | None | SRR28860164 | HR-TB | lineage1.1.2 | None | SRR27449981 | Sensitive | lineage3 | None | SRR28868748 | HR-TB | lineage2.2.1 | None | SRR28868404 | Other | lineage3 | None | SRR28860045 | Sensitive | lineage2.2.1 | None | SRR28868649 | Sensitive | lineage3 | None | SRR28859593 | HR-TB | lineage3 | None | SRR28868483 | Sensitive | lineage2.2.1.1 | None | SRR27450337 | Sensitive | lineage4.3.4.2 | None | SRR28860082 | Sensitive | lineage4.3.2 | None | SRR28859587 | Sensitive | lineage1.2.1.2.1 | None | SRR28859845 | HR-TB | lineage2.2.1 | None | SRR28868599 | HR-TB | lineage2.2.1 | None | SRR28859776 | Sensitive | lineage4.3.4.2 | None | SRR24799197 | Sensitive | lineage4.3.2 | None | SRR27450582 | Other | lineage1.2.1.2.1 | None | SRR28868485 | Sensitive | lineage1.1.2 | None | SRR26112435 | Other | lineage3 | None | SRR28859708 | Sensitive | lineage4.3.2 | None | SRR28868650 | Sensitive | lineage4.3.4.2 | None | SRR21733138 | Sensitive | lineage1.1.2 | None | SRR27450110 | Sensitive | lineage4.3.4.2.1 | None | SRR27450016 | Sensitive | lineage1.1.2 | None | SRR28868848 | Sensitive | lineage2.2.1 | None | SRR27450310 | Sensitive | lineage2.2.1 | None | SRR28859811 | Sensitive | lineage4.1.4 | None | SRR28868432 | Sensitive | lineage3.1.2.1 | None | SRR26124830 | Sensitive | lineage4.4.2 | None | SRR28859806 | Other | lineage4.8 | None | SRR28868466 | Sensitive | lineage3 | None | SRR26112572 | Sensitive | lineage4.5 | None | SRR27450584 | Sensitive | lineage4.8 | None | SRR28434998 | MDR-TB | lineage2.2.1 | None | SRR28868834 | Sensitive | lineage1.1.2 | None | SRR28859649 | HR-TB | lineage1.2.1.2.1 | None | SRR28859810 | Sensitive | lineage4.9 | None | SRR28859615 | Sensitive | lineage4.3.3 | None | SRR21733193 | Sensitive | lineage1.1.2 | None | SRR27450002 | Sensitive | lineage2.1 | None | SRR27450101 | Sensitive | lineage4.3.3 | None | SRR27450428 | Sensitive | lineage4.5 | None | SRR27450192 | Sensitive | lineage4.9 | None | SRR26111973 | Sensitive | lineage3.1.2 | None | SRR28868794 | Sensitive | lineage4.6.1 | None | SRR28859763 | Sensitive | lineage4.5 | None | SRR28868367 | Sensitive | lineage2.2.1 | None | SRR28868736 | Sensitive | lineage1.2.1.2.1 | None | SRR28859628 | HR-TB | lineage2.2.1 | None | SRR28859857 | HR-TB | lineage4.1.1 | None | SRR28859923 | Sensitive | lineage3 | None | SRR28868344 | Sensitive | lineage1.1.1 | None | SRR28868601 | Other | lineage1.1.1.1 | None | SRR28860006 | Sensitive | lineage6.2.2 | None | SRR26937151 | MDR-TB | lineage2.2.1 | None | SRR27450557 | Sensitive | lineage3 | None | SRR26397804 | Other | lineage4.1.1.3 | None | SRR28860046 | Sensitive | lineage1.2.1.2.1 | None | SRR26111989 | Sensitive | lineage2.2.1 | None | SRR24710102 | XDR-TB | lineage2.2.1 | None | SRR27450293 | HR-TB | lineage1.1.1.1 | None | SRR26558637 | MDR-TB | lineage2.2.1.1 | None | SRR27450335 | Sensitive | lineage2.2.1 | None | SRR27450141 | Other | lineage2.2.1 | None | SRR28860189 | Sensitive | lineage1.2.1.2 | None | SRR28859937 | Sensitive | lineage4.3.2 | None | SRR28868558 | Sensitive | lineage2.2.1 | None | SRR27450019 | Sensitive | lineage3 | None | SRR28859642 | Sensitive | lineage4.8 | None | SRR28858694 | Other | lineage1.1.1 | None | SRR16088198 | MDR-TB | lineage2.2.1 | None | SRR28868419 | Other | lineage3 | None | SRR28858452 | Sensitive | lineage3.1.2 | None | SRR28868468 | Other | lineage2.2.1 | None | SRR28859651 | MDR-TB | lineage2.2.1.2 | None | SRR28860205 | Sensitive | lineage4.6.2.2 | None | SRR27450294 | Sensitive | lineage2.1 | None | SRR28868783 | HR-TB | lineage2.2.1 | None | SRR28858607 | Sensitive | lineage3 | None | SRR28868428 | Other | lineage1.2.1.2.1 | None | SRR28859691 | Sensitive | lineage4.3.4.1 | None | SRR28859747 | Sensitive | lineage1.1.2 | None | SRR28859754 | Sensitive | lineage1.2.1.2.1 | None | SRR28868766 | Sensitive | lineage2.2.1 | None | SRR28859758 | Sensitive | lineage4.1.2.1 | None | SRR28859975 | Sensitive | lineage4.1.2.1 | None | SRR21733354 | Sensitive | lineage1.2.1.2.1 | None | SRR28868847 | Sensitive | lineage1.2.1.2.1 | None | SRR28859613 | Other | lineage4.3.3 | None | SRR28868504 | Sensitive | lineage4.8 | None | SRR21733344 | Sensitive | lineage2.2.1 | None | SRR27450560 | Sensitive | lineage1.1.2 | None | SRR28859880 | Sensitive | lineage2.2.1 | None | SRR28868569 | Sensitive | lineage3 | None | SRR28858408 | Sensitive | lineage3 | None | SRR28860084 | Sensitive | lineage2.2.2 | None | SRR28868565 | Sensitive | lineage2.2.1 | None | SRR28858481 | Sensitive | lineage1.2.1.2.1 | None | SRR28868745 | Sensitive | lineage2.2.1 | None | SRR27450578 | Sensitive | lineage2.2.1 | None | SRR28868831 | Sensitive | lineage4.3.3 | None | SRR27450343 | Sensitive | lineage2.2.1 | None | SRR28868842 | Other | lineage3 | None | SRR28860102 | Other | lineage3 | None | SRR28868709 | Sensitive | lineage2.2.1.1 | None | SRR28868825 | Sensitive | lineage1.1.2 | None | SRR28868476 | Sensitive | lineage1.1.2 | None | SRR28859778 | Sensitive | lineage1.2.2.2 | None | SRR27450593 | Sensitive | lineage4.3.2 | None | SRR28868659 | Sensitive | lineage1.1.2 | None | SRR28859640 | Sensitive | lineage2.2.2 | None | SRR27450142 | Sensitive | lineage1.2.1.2.1 | None | SRR28868488 | Sensitive | lineage1.2.1.2.1 | None | SRR28859998 | Sensitive | lineage2.2.1 | None | SRR28868663 | Sensitive | lineage1.2.1.2.1 | None | SRR24710086 | Sensitive | lineage2.2.1 | None | SRR26112748 | HR-TB | lineage4.1.2.1 | None | SRR28858478 | Sensitive | lineage4.9 | None | SRR21732815 | Sensitive | lineage1.1.2 | None | SRR27450334 | Sensitive | lineage2.2.1 | None | SRR26111940 | Sensitive | lineage3 | None | SRR28858366 | MDR-TB | lineage4.3.3 | None | SRR28868457 | Other | lineage4.4 | None | SRR28868472 | Sensitive | lineage1.2.1.2.1 | None | SRR28860048 | Sensitive | lineage1.2.1.2.1 | None | SRR28859825 | Sensitive | lineage4.8 | None | SRR28860149 | Sensitive | lineage4.3.2 | None | SRR28868743 | Sensitive | lineage2.2.1.1 | None | SRR28868770 | Sensitive | lineage2.2.1 | None | SRR27450020 | Sensitive | lineage3 | None | SRR28868479 | Other | lineage2.2.1.2 | None | SRR28858421 | MDR-TB | lineage2.2.1 | None | SRR26112447 | Sensitive | lineage4.3.4.1 | None | SRR27450541 | Sensitive | lineage3 | None | SRR27450156 | Sensitive | lineage2.2.1.1 | None | SRR26111963 | Sensitive | lineage4.1.2.1 | None | SRR26112024 | Sensitive | lineage4.8 | None | SRR28868658 | Sensitive | lineage2.2.1 | None | SRR27450532 | HR-TB | lineage2.2.1 | None | SRR27450423 | Other | lineage3.1.2.1 | None | SRR27450508 | Sensitive | lineage1.2.1.2.1 | None | SRR26558640 | HR-TB | lineage1.1.1.1 | None | SRR21733345 | Sensitive | lineage1.2.1.2.1 | None | SRR26112737 | Sensitive | lineage4.1.2.1 | None | SRR28859917 | Sensitive | lineage4.1.2.1 | None | SRR28859997 | Sensitive | lineage4.8 | None | SRR27450185 | Sensitive | lineage2.2.1 | None | SRR28858554 | Sensitive | lineage4.5 | None | SRR28868365 | Sensitive | lineage1.2.1 | None | SRR26112354 | Sensitive | lineage4.2.1 | None | SRR28860191 | Sensitive | lineage4.1.1 | None | SRR28868594 | Sensitive | lineage3 | None | SRR28868772 | Sensitive | lineage1.2.1.2.1 | None | SRR28860077 | Sensitive | lineage4.1.2.1 | None | SRR28868578 | Sensitive | lineage2.2.1.1 | None | SRR28868664 | Sensitive | lineage1.2.1.2.1 | None | SRR27450523 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28868651 | Sensitive | lineage4.3.3 | None | SRR28868793 | Sensitive | lineage1.2.1.2.1 | None | SRR27450509 | Sensitive | lineage3 | None | SRR28868495 | Other | lineage1.1.2 | None | SRR28868849 | Sensitive | lineage4.1.1.1 | None | SRR24709932 | MDR-TB | lineage2.2.1 | None | SRR28868389 | Sensitive | lineage2.2.1 | None | SRR28868713 | Other | lineage3 | None | SRR28868677 | Sensitive | lineage2.2.1 | None | SRR28859745 | Sensitive | lineage4.3.3 | None | SRR28859602 | HR-TB | lineage4.1.2.1 | None | SRR21733204 | Sensitive | lineage1.1.2 | None | SRR28868467 | Sensitive | lineage1.1.2 | None | SRR28858427 | MDR-TB | lineage2.2.1 | None | SRR27450377 | Sensitive | lineage4.3.4.2.1 | None | SRR28868605 | Sensitive | lineage1.1.2 | None | SRR28868519 | Sensitive | lineage3.1.1 | None | SRR24255993 | MDR-TB | lineage4.3.3 | None | SRR28868550 | Sensitive | lineage3 | None | SRR28859983 | Sensitive | lineage4.3.3 | None | SRR28868375 | Sensitive | lineage4.3.4.2.1 | None | SRR27450591 | Sensitive | lineage2.2.1 | None | SRR28859977 | HR-TB | lineage4.1.2.1 | None | SRR28858603 | Sensitive | lineage1.2.2.2 | None | SRR28868823 | Sensitive | lineage1.1.3.1 | None | SRR28868469 | Sensitive | lineage4.3.3 | None | SRR27450545 | Sensitive | lineage3 | None | SRR28868351 | Sensitive | lineage4.4.2 | None | SRR28868769 | Sensitive | lineage1.1.1.1 | None | SRR28868590 | Sensitive | lineage1.2.1.2.1 | None |
---|