lineage | Count |
---|---|
lineage2.2.1 | 75 |
lineage4.7 | 1 |
La1.2 | 3 |
lineage1.2.1.2.1 | 10 |
lineage4.8 | 29 |
lineage4.2.1 | 6 |
lineage4.9 | 3 |
lineage1.2.2.1 | 1 |
lineage4.3.3 | 15 |
lineage1.2.1.2 | 2 |
lineage4.6 | 1 |
lineage4.4.1.1 | 5 |
lineage3 | 26 |
lineage3.1.2 | 3 |
lineage1.1.2 | 6 |
lineage4.1.2 | 3 |
lineage4.5 | 6 |
lineage4.3.4.1 | 2 |
lineage3.1.2.1 | 3 |
lineage4.3.2 | 3 |
lineage4.2.1.1 | 4 |
lineage4.3.4.2 | 4 |
lineage4.1.2.1 | 15 |
lineage1.1.1.1 | 3 |
lineage4.8.1 | 1 |
lineage4.1.1 | 1 |
lineage4.6.2.2 | 1 |
La1.2.BCG | 1 |
lineage4.4.2 | 2 |
lineage4.6.5 | 1 |
lineage1.2.2.2 | 1 |
lineage4.8;lineage4.3.3 | 1 |
lineage4.6.2 | 1 |
lineage1.1.3 | 1 |
lineage3;lineage2.2.1.1 | 1 |
lineage4.2.2.1 | 2 |
lineage4.2.2.2 | 1 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage4.2.2.2;lineage2.2.1 | 1 |
lineage4.2.2 | 1 |
lineage2.2.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2.2 | 1 |
lineage4.8;lineage3 | 1 |
La2 | 2 |
lineage6.2.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4 | 1 |
spoligotype | Count |
---|---|
None | 258 |
ID | Drug resistance | Lineage | Country iso2 | SRR16088595 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049874 | Sensitive | lineage4.7 | None | ERR6198209 | Other | La1.2 | None | SRR16087896 | Pre-XDR-TB | lineage2.2.1 | None | SRR16087890 | MDR-TB | lineage2.2.1 | None | ERR6336773 | Sensitive | lineage1.2.1.2.1 | None | ERR6198376 | Other | La1.2 | None | ERR6198396 | Other | La1.2 | None | SRR16088032 | Sensitive | lineage4.8 | None | SRR16088021 | HR-TB | lineage4.2.1 | None | ERR11049917 | Sensitive | lineage4.9 | None | ERR11049930 | HR-TB | lineage1.2.2.1 | None | SRR16088022 | HR-TB | lineage2.2.1 | None | SRR16088034 | HR-TB | lineage4.3.3 | None | SRR21732797 | HR-TB | lineage1.2.1.2 | None | SRR16088211 | Sensitive | lineage4.8 | None | SRR16088209 | MDR-TB | lineage2.2.1 | None | SRR16088198 | MDR-TB | lineage2.2.1 | None | ERR11049942 | Sensitive | lineage4.6 | None | SRR21732756 | Sensitive | lineage4.4.1.1 | None | SRR21733214 | Sensitive | lineage3 | None | SRR21732818 | Sensitive | lineage3 | None | SRR21732868 | Sensitive | lineage4.8 | None | SRR21732941 | Sensitive | lineage3.1.2 | None | SRR21732962 | Other | lineage3 | None | SRR21733138 | Sensitive | lineage1.1.2 | None | SRR22251094 | Other | lineage4.1.2 | None | SRR21733364 | Sensitive | lineage4.5 | None | SRR22251155 | MDR-TB | lineage4.5 | None | SRR22251142 | Other | lineage1.2.1.2.1 | None | SRR22251643 | Sensitive | lineage4.5 | None | ERR7764393 | Sensitive | lineage4.3.4.1 | None | SRR22251358 | Sensitive | lineage1.2.1.2.1 | None | ERR11049986 | Other | lineage3 | None | SRR24256375 | MDR-TB | lineage2.2.1 | None | SRR22251647 | Sensitive | lineage4.3.3 | None | SRR24256326 | MDR-TB | lineage2.2.1 | None | SRR21732799 | Sensitive | lineage3.1.2.1 | None | ERR11050006 | Sensitive | lineage4.3.2 | None | SRR21732810 | Sensitive | lineage1.1.2 | None | SRR26111906 | Sensitive | lineage4.4.1.1 | None | SRR21733215 | Sensitive | lineage3.1.2.1 | None | ERR11050008 | Sensitive | lineage4.3.3 | None | SRR21733360 | Sensitive | lineage1.1.2 | None | SRR26111957 | Sensitive | lineage3 | None | SRR26111934 | Sensitive | lineage2.2.1 | None | ERR11050083 | Sensitive | lineage4.8 | None | SRR26112434 | Sensitive | lineage4.8 | None | ERR11067636 | Sensitive | lineage3 | None | ERR11050077 | Sensitive | lineage4.8 | None | ERR11050020 | MDR-TB | lineage4.2.1.1 | None | SRR26111990 | HR-TB | lineage4.8 | None | SRR26112217 | Sensitive | lineage4.3.4.2 | None | ERR11050037 | Sensitive | lineage4.1.2.1 | None | SRR22251376 | HR-TB | lineage1.1.1.1 | None | ERR11050071 | Sensitive | lineage4.8 | None | ERR11050079 | Other | lineage4.1.2 | None | ERR11050207 | MDR-TB | lineage4.3.4.2 | None | ERR11050100 | Sensitive | lineage4.1.2.1 | None | ERR11050117 | Sensitive | lineage4.8.1 | None | ERR11050186 | Sensitive | lineage3 | None | ERR11050555 | Sensitive | lineage4.8 | None | ERR11050230 | Sensitive | lineage4.1.1 | None | ERR11050458 | Sensitive | lineage4.8 | None | ERR11050485 | Sensitive | lineage4.6.2.2 | None | ERR11050497 | Sensitive | lineage4.1.2.1 | None | SRR13232471 | Sensitive | lineage2.2.1 | None | ERR11050449 | Sensitive | lineage2.2.1 | None | ERR11050457 | Sensitive | lineage4.8 | None | ERR11050467 | Sensitive | lineage2.2.1 | None | SRR12006541 | Sensitive | lineage1.2.1.2.1 | None | ERR11050474 | Other | La1.2.BCG | None | ERR11050482 | Sensitive | lineage4.4.1.1 | None | ERR11050489 | Sensitive | lineage4.1.2.1 | None | ERR11050549 | Sensitive | lineage4.8 | None | SRR14519885 | Sensitive | lineage4.4.2 | None | SRR14801502 | Sensitive | lineage4.1.2.1 | None | SRR14782013 | Sensitive | lineage2.2.1 | None | SRR14782136 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782358 | MDR-TB | lineage2.2.1 | None | SRR14782546 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782578 | Sensitive | lineage2.2.1 | None | ERR11050578 | Sensitive | lineage4.8 | None | SRR14782668 | Sensitive | lineage2.2.1 | None | SRR14782684 | Other | lineage2.2.1 | None | SRR14782781 | Other | lineage4.2.1.1 | None | SRR14781873 | Other | lineage2.2.1 | None | SRR14782681 | Pre-XDR-TB | lineage4.2.1 | None | ERR11050618 | Other | lineage4.6.5 | None | SRR14801844 | MDR-TB | lineage4.2.1 | None | ERR11050629 | Sensitive | lineage1.2.1.2.1 | None | ERR11050619 | Sensitive | lineage1.2.2.2 | None | SRR15506900 | Pre-XDR-TB | lineage2.2.1 | None | SRR15465764 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088109 | MDR-TB | lineage2.2.1 | None | ERR11050662 | Sensitive | lineage4.5 | None | SRR16088245 | Sensitive | lineage4.8 | None | SRR16088224 | Sensitive | lineage2.2.1 | None | SRR16157104 | Pre-XDR-TB | lineage4.8 | None | SRR16088444 | MDR-TB | lineage2.2.1 | None | SRR16088539 | Sensitive | lineage2.2.1 | None | SRR16157094 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR11050701 | Sensitive | lineage4.3.2 | None | SRR16157105 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050700 | Sensitive | lineage3 | None | SRR26112611 | Sensitive | lineage1.2.1.2.1 | None | ERR11050725 | Sensitive | lineage4.8 | None | SRR18714832 | MDR-TB | lineage2.2.1 | None | ERR11050731 | Sensitive | lineage4.3.4.2 | None | SRR18714758 | Sensitive | lineage4.2.1.1 | None | SRR18714778 | Sensitive | lineage4.2.1.1 | None | SRR18714836 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050755 | Sensitive | lineage3 | None | SRR18714781 | Sensitive | lineage4.3.3 | None | SRR18714915 | MDR-TB | lineage2.2.1 | None | SRR18714975 | Other | lineage4.8 | None | SRR18714921 | MDR-TB | lineage2.2.1 | None | SRR18714934 | MDR-TB | lineage2.2.1 | None | SRR18714961 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715003 | HR-TB | lineage2.2.1 | None | SRR18714999 | Sensitive | lineage4.3.3 | None | SRR18715142 | Sensitive | lineage2.2.1 | None | SRR18715027 | Sensitive | lineage4.3.3 | None | SRR18715188 | HR-TB | lineage4.3.3 | None | SRR18715211 | Sensitive | lineage4.8 | None | SRR18715230 | Sensitive | lineage4.8 | None | SRR18715209 | Sensitive | lineage2.2.1 | None | SRR18715270 | Sensitive | lineage2.2.1 | None | SRR18715397 | Sensitive | lineage4.3.3 | None | SRR18715315 | Sensitive | lineage4.1.2.1 | None | SRR18715396 | Sensitive | lineage2.2.1 | None | SRR18715352 | HR-TB | lineage4.8;lineage4.3.3 | None | SRR18715369 | Other | lineage2.2.1 | None | SRR18715375 | Sensitive | lineage4.8 | None | SRR18715393 | Sensitive | lineage2.2.1 | None | SRR25827770 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715420 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715429 | Sensitive | lineage4.1.2.1 | None | ERR11050789 | Sensitive | lineage4.6.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR26112741 | Sensitive | lineage4.5 | None | SRR25827750 | Sensitive | lineage1.1.3 | None | SRR24710129 | MDR-TB | lineage2.2.1 | None | SRR18715415 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715424 | Sensitive | lineage4.8 | None | SRR24709872 | MDR-TB | lineage2.2.1 | None | SRR25827522 | XDR-TB | lineage2.2.1 | None | SRR25827657 | Pre-XDR-TB | lineage3 | None | ERR11050871 | Sensitive | lineage2.2.1 | None | SRR25827404 | Pre-XDR-TB | lineage3;lineage2.2.1.1 | None | ERR11050860 | Sensitive | lineage4.3.2 | None | ERR11068682 | Sensitive | lineage4.1.2.1 | None | ERR11068571 | Sensitive | lineage4.1.2.1 | None | ERR11068921 | Other | lineage2.2.1 | None | ERR11081021 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082550 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082586 | Sensitive | lineage4.8 | None | SRR23861715 | HR-TB | lineage4.2.1 | None | ERR11082862 | HR-TB | lineage4.2.2.1 | None | ERR11083031 | Other | lineage4.2.2.2 | None | SRR23861870 | Sensitive | lineage4.8 | None | SRR23861716 | HR-TB | lineage4.3.3 | None | SRR23861779 | Sensitive | lineage4.8 | None | SRR23861983 | Other | lineage2.2.1 | None | SRR23861890 | Sensitive | lineage2.2.1 | None | SRR23862142 | Sensitive | lineage4.1.2.1 | None | SRR23861990 | Sensitive | lineage4.8 | None | SRR23862005 | HR-TB | lineage4.2.1;lineage2.2.1 | None | SRR23938659 | Sensitive | lineage2.2.1 | None | SRR23862198 | Sensitive | lineage4.3.3 | None | SRR23862189 | Sensitive | lineage4.3.3 | None | SRR21733271 | Sensitive | lineage4.5 | None | SRR24114349 | MDR-TB | lineage3 | None | SRR21732753 | Sensitive | lineage1.1.2 | None | SRR21732754 | Sensitive | lineage2.2.1 | None | SRR21732815 | Sensitive | lineage1.1.2 | None | SRR24256057 | MDR-TB | lineage4.3.3 | None | SRR24255911 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733359 | Sensitive | lineage4.2.2.1 | None | SRR27450374 | Sensitive | lineage1.1.2 | None | SRR24256349 | MDR-TB | lineage2.2.1 | None | SRR25827562 | Pre-XDR-TB | lineage4.2.2.2;lineage2.2.1 | None | SRR27450014 | Sensitive | lineage1.2.1.2.1 | None | SRR27450145 | Sensitive | lineage1.1.1.1 | None | SRR27450175 | Sensitive | lineage4.2.2 | None | SRR27450179 | Sensitive | lineage2.2.1.1 | None | SRR26558634 | HR-TB | lineage2.2.1 | None | SRR27450004 | Sensitive | lineage3 | None | SRR27450020 | Sensitive | lineage3 | None | SRR27450380 | HR-TB | lineage2.2.1 | None | SRR26558636 | HR-TB | lineage1.2.1.2.1 | None | SRR27450420 | Sensitive | lineage4.4.2 | None | SRR27450566 | Sensitive | lineage3 | None | SRR27450589 | Sensitive | lineage1.1.3.1 | None | SRR26331595 | MDR-TB | lineage4.4.1.1 | None | SRR27450430 | Sensitive | lineage3.1.2 | None | SRR26558642 | HR-TB | lineage2.1 | None | SRR27450105 | Sensitive | lineage4.3.4.2.1 | None | SRR27450021 | Sensitive | lineage3 | None | SRR27450106 | MDR-TB | lineage3 | None | SRR27450146 | Sensitive | lineage4.9 | None | SRR27450398 | Sensitive | lineage4.1.2.1 | None | SRR27450334 | Sensitive | lineage2.2.1 | None | SRR27450592 | Sensitive | lineage3 | None | SRR26112763 | Sensitive | lineage2.2.2 | None | SRR27450591 | Sensitive | lineage2.2.1 | None | SRR22251356 | HR-TB | lineage1.1.1.1 | None | SRR22251638 | Sensitive | lineage2.2.1 | None | SRR22251092 | Sensitive | lineage2.2.1 | None | SRR22251131 | Sensitive | lineage3 | None | SRR22251381 | Sensitive | lineage1.2.1.2.1 | None | SRR22251642 | Sensitive | lineage3 | None | SRR27449993 | Sensitive | lineage1.2.1.2.1 | None | SRR25666635 | Sensitive | lineage4.1.2.1 | None | SRR25827444 | Pre-XDR-TB | lineage3 | None | SRR25827611 | Sensitive | lineage3 | None | SRR25827715 | Other | lineage4.8;lineage3 | None | SRR24709876 | MDR-TB | lineage2.2.1 | None | SRR27450423 | Other | lineage3.1.2.1 | None | SRR27450108 | Sensitive | lineage3 | None | SRR27450012 | Sensitive | lineage1.2.1.2 | None | ERR11067197 | Sensitive | lineage4.3.3 | None | SRR27450432 | Sensitive | lineage2.2.1 | None | SRR24255910 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255971 | Sensitive | lineage2.2.1 | None | SRR25827514 | Pre-XDR-TB | lineage3 | None | ERR2229504 | Sensitive | lineage4.8 | None | SRR24256007 | MDR-TB | lineage4.3.3 | None | SRR24256355 | Sensitive | lineage4.8 | None | ERR11067201 | Sensitive | lineage3 | None | SRR23310987 | MDR-TB | lineage4.2.1 | None | ERR10430697 | Sensitive | La2 | None | DRR473906 | Sensitive | lineage2.2.1 | None | SRR7131053 | Other | lineage2.2.1 | None | SRR7131169 | Other | lineage4.1.2.1 | None | ERR10430689 | Sensitive | La2 | None | DRR473815 | Sensitive | lineage4.9 | None | ERR11067425 | Sensitive | lineage4.1.2 | None | ERR11043695 | Sensitive | lineage4.8 | None | ERR10680203 | MDR-TB | lineage6.2.2 | None | ERR10748291 | MDR-TB | lineage2.2.1 | None | ERR10969107 | Sensitive | lineage2.2.1 | None | ERR10969199 | HR-TB | lineage4.3.4.2 | None | ERR10969200 | Sensitive | lineage4.3.4.1 | None | ERR11043666 | Sensitive | lineage2.2.1 | None | ERR10748292 | MDR-TB | lineage2.2.1 | None | ERR10748321 | MDR-TB | lineage4.1.1.3 | None | ERR10748335 | MDR-TB | lineage2.2.1 | None | ERR10969202 | Sensitive | lineage4.1.2.1 | None | ERR11043115 | Sensitive | lineage4 | None | ERR11049443 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044905 | Sensitive | lineage3 | None | SRR16088103 | Sensitive | lineage3 | None | ERR11049463 | Sensitive | lineage4.1.2.1 | None | ERR4797096 | Pre-XDR-TB | lineage3.1.2 | None | SRR16088072 | Sensitive | lineage4.3.3 | None | SRR16088210 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088206 | XDR-TB | lineage2.2.1 | None |
---|