Rv0565c - c.1245C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
0 RR-TB
0 HR-TB
88 MDR-TB
39 Pre-XDR-TB
2 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 2 |
| lineage4.2.2.1 | 128 |
| lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 133 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16057996 | Other | lineage3 | None | SRR29274240 | MDR-TB | lineage4.2.2.1 | None | SRR16149157 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149146 | MDR-TB | lineage4.2.2.1 | None | SRR16149182 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274273 | MDR-TB | lineage4.2.2.1 | None | SRR29274262 | MDR-TB | lineage4.2.2.1 | None | SRR16149141 | MDR-TB | lineage4.2.2.1 | None | SRR29274269 | MDR-TB | lineage4.2.2.1 | None | DRR188595 | Sensitive | lineage4.9 | None | SRR16149137 | MDR-TB | lineage4.2.2.1 | None | SRR16149163 | MDR-TB | lineage4.2.2.1 | None | SRR16149140 | MDR-TB | lineage4.2.2.1 | None | SRR16149130 | MDR-TB | lineage4.2.2.1 | None | ERR1034668 | MDR-TB | lineage4.2.2.1 | bg | ERR2510691 | MDR-TB | lineage4.2.2.1 | it | SRR16149172 | MDR-TB | lineage4.2.2.1 | None | ERR2516274 | MDR-TB | lineage4.2.2.1 | be | SRR16149115 | MDR-TB | lineage4.2.2.1 | None | SRR16149155 | MDR-TB | lineage4.2.2.1 | None | ERR4822293 | MDR-TB | lineage4.2.2.1 | de | SRR16149142 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149185 | MDR-TB | lineage4.2.2.1 | None | SRR16149118 | MDR-TB | lineage4.2.2.1 | None | ERR11043468 | MDR-TB | lineage4.2.2.1 | None | SRR29274255 | MDR-TB | lineage4.2.2.1 | None | SRR16149122 | MDR-TB | lineage4.2.2.1 | None | ERR13284292 | MDR-TB | lineage4.2.2.1 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR16149187 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274263 | MDR-TB | lineage4.2.2.1 | None | SRR16149164 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149152 | MDR-TB | lineage4.2.2.1 | None | ERR11068799 | MDR-TB | lineage4.1.2.1;lineage4.2.2.1 | None | SRR16149112 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274257 | MDR-TB | lineage4.2.2.1 | None | SRR29274237 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR1034669 | Pre-XDR-TB | lineage4.2.2.1 | bg | SRR29274253 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR13276410 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149177 | MDR-TB | lineage4.2.2.1 | None | SRR16149127 | MDR-TB | lineage4.2.2.1 | None | SRR16149143 | MDR-TB | lineage4.2.2.1 | None | SRR16149154 | MDR-TB | lineage4.2.2.1 | None | SRR16149148 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR13246344 | Sensitive | lineage4.9 | None | SRR7829581 | MDR-TB | lineage4.2.2.1 | None | SRR16149147 | MDR-TB | lineage4.2.2.1 | None | SRR16149178 | MDR-TB | lineage4.2.2.1 | None | SRR16149186 | MDR-TB | lineage4.2.2.1 | None | SRR16149158 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149162 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149119 | MDR-TB | lineage4.2.2.1 | None | ERR11069066 | MDR-TB | lineage4.2.2.1 | None | SRR29274234 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274281 | MDR-TB | lineage4.2.2.1 | None | SRR29274258 | MDR-TB | lineage4.2.2.1 | None | SRR16149121 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11043272 | MDR-TB | lineage4.2.2.1 | None | SRR16149161 | MDR-TB | lineage4.2.2.1 | None | ERR11082337 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR9125746 | Sensitive | lineage3 | None | SRR16149171 | MDR-TB | lineage4.2.2.1 | None | SRR29274226 | MDR-TB | lineage4.2.2.1 | None | SRR29274244 | MDR-TB | lineage4.2.2.1 | None | SRR16149181 | MDR-TB | lineage4.2.2.1 | None | ERR13276276 | MDR-TB | lineage4.2.2.1 | None | SRR16149117 | MDR-TB | lineage4.2.2.1 | None | SRR16149183 | MDR-TB | lineage4.2.2.1 | None | SRR16149153 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149184 | MDR-TB | lineage4.2.2.1 | None | SRR29274241 | MDR-TB | lineage4.2.2.1 | None | SRR29274283 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | ERR11081190 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274274 | MDR-TB | lineage4.2.2.1 | None | SRR16149134 | MDR-TB | lineage4.2.2.1 | None | ERR11082782 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11069115 | MDR-TB | lineage4.2.2.1 | None | SRR29274267 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274264 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR1034664 | MDR-TB | lineage4.2.2.1 | bg | SRR16149116 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274242 | MDR-TB | lineage4.2.2.1 | None | ERR13284122 | MDR-TB | lineage4.2.2.1 | None | SRR16149125 | MDR-TB | lineage4.2.2.1 | None | SRR16149165 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274231 | XDR-TB | lineage4.2.2.1 | None | SRR16149149 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149128 | MDR-TB | lineage4.2.2.1 | None | SRR16149151 | MDR-TB | lineage4.2.2.1 | None | SRR16149168 | MDR-TB | lineage4.2.2.1 | None | SRR16149145 | MDR-TB | lineage4.2.2.1 | None | SRR16149144 | MDR-TB | lineage4.2.2.1 | None | SRR29274284 | MDR-TB | lineage4.2.2.1 | None | SRR16149138 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149166 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149188 | XDR-TB | lineage4.2.2.1 | None | ERR2677466 | MDR-TB | lineage4.2.2.1 | de | ERR2677462 | MDR-TB | lineage4.2.2.1 | de | SRR16149179 | MDR-TB | lineage4.2.2.1 | None | SRR16149132 | MDR-TB | lineage4.2.2.1 | None | SRR29274243 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274235 | MDR-TB | lineage4.2.2.1 | None | SRR16149159 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149173 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149139 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11044740 | MDR-TB | lineage4.2.2.1 | None | ERR3639774 | MDR-TB | lineage4.2.2.1 | None | SRR16149114 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149176 | MDR-TB | lineage4.2.2.1 | None | ERR13277094 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11043336 | MDR-TB | lineage4.2.2.1 | None | SRR29274225 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR29274272 | MDR-TB | lineage4.2.2.1 | None | SRR16149150 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR13276283 | MDR-TB | lineage4.2.2.1 | None | SRR29274265 | MDR-TB | lineage4.2.2.1 | None | SRR16149160 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149135 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149175 | MDR-TB | lineage4.2.2.1 | None | ERR3639807 | MDR-TB | lineage4.2.2.1 | None | SRR29274254 | MDR-TB | lineage4.2.2.1 | None | ERR4407557 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11081067 | MDR-TB | lineage4.2.2.1 | None | SRR16149124 | MDR-TB | lineage4.2.2.1 | None | SRR16149156 | MDR-TB | lineage4.2.2.1 | None | SRR16149131 | MDR-TB | lineage4.2.2.1 | None | SRR16149180 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR13284695 | MDR-TB | lineage4.2.2.1 | None | SRR16149174 | MDR-TB | lineage4.2.2.1 | None | SRR16149123 | MDR-TB | lineage4.2.2.1 | None |
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