lineage | Count |
---|---|
lineage4.3.3 | 7 |
lineage4.3.4.1 | 5 |
lineage4.4.2 | 5 |
lineage2.2.1 | 128 |
lineage4.3.2.1 | 1 |
lineage4.8 | 18 |
lineage4.3.4.2 | 54 |
lineage4.1.2.1 | 10 |
lineage2.2.1.2 | 3 |
lineage1.1.2 | 3 |
lineage4.3.3;lineage4.3.4.1 | 2 |
lineage4.2.1 | 3 |
lineage4.3.2 | 1 |
lineage3 | 5 |
lineage4.9 | 1 |
lineage2.2.1;lineage4.2.1 | 1 |
lineage4.6.2.2 | 1 |
lineage4.1.2.1;lineage4.2.1 | 2 |
lineage2.2.1.1 | 2 |
lineage4.2.2.2 | 1 |
lineage4.2.2 | 1 |
lineage4.3.3;lineage4.3.4.2 | 2 |
spoligotype | Count |
---|---|
None | 256 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
ERR775296 | RR-TB | lineage4.3.3 | pe |
ERR6866771 | MDR-TB | lineage4.3.4.1 | None |
SRR15368792 | Pre-XDR-TB | lineage4.4.2 | None |
SRR10305973 | MDR-TB | lineage2.2.1 | None |
SRR10305975 | MDR-TB | lineage2.2.1 | None |
SRR1174839 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1873483 | MDR-TB | lineage4.3.2.1 | za |
SRR1167123 | MDR-TB | lineage4.8 | None |
SRR21277863 | Pre-XDR-TB | lineage4.4.2 | None |
SRR29050701 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR3794409 | MDR-TB | lineage2.2.1 | None |
ERR9992906 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4024582 | MDR-TB | lineage4.1.2.1 | None |
SRR11662523 | MDR-TB | lineage2.2.1 | None |
ERR12118038 | MDR-TB | lineage4.1.2.1 | None |
SAMN03246387 | MDR-TB | lineage2.2.1 | None |
SRR13583418 | MDR-TB | lineage4.3.4.2 | None |
ERR2510666 | Pre-XDR-TB | lineage2.2.1 | it |
SRR1162739 | MDR-TB | lineage4.8 | None |
SRR10040429 | MDR-TB | lineage2.2.1 | None |
SRR10305614 | MDR-TB | lineage2.2.1 | None |
ERR13290270 | MDR-TB | lineage4.8 | None |
SRR25206953 | XDR-TB | lineage2.2.1 | None |
SRR25207100 | MDR-TB | lineage2.2.1 | None |
SRR25207186 | MDR-TB | lineage2.2.1 | None |
SRR25207376 | Pre-XDR-TB | lineage2.2.1 | None |
SRR9224979 | MDR-TB | lineage4.3.4.2 | None |
SRR13583368 | MDR-TB | lineage4.3.4.2 | None |
SRR13583350 | MDR-TB | lineage4.3.4.2 | None |
ERR3273196 | MDR-TB | lineage2.2.1.2 | None |
ERR4553617 | MDR-TB | lineage1.1.2 | None |
SRR15316023 | MDR-TB | lineage2.2.1 | None |
ERR6879035 | MDR-TB | lineage4.3.3;lineage4.3.4.1 | None |
SRR25207191 | MDR-TB | lineage2.2.1 | None |
ERR4800326 | MDR-TB | lineage2.2.1 | in |
SRR21691101 | MDR-TB | lineage4.1.2.1 | None |
SAMN02414843 | MDR-TB | lineage4.8 | se |
SRR29050646 | MDR-TB | lineage4.3.4.2 | None |
SRR29017037 | MDR-TB | lineage4.8 | None |
SRR6257047 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4810942 | MDR-TB | lineage2.2.1 | cn |
ERR4829855 | Pre-XDR-TB | lineage2.2.1 | None |
SRR23310870 | MDR-TB | lineage2.2.1 | None |
SRR29051273 | MDR-TB | lineage4.3.4.2 | None |
SRR1184296 | MDR-TB | lineage2.2.1 | None |
SRR28859651 | MDR-TB | lineage2.2.1.2 | None |
SRR24709922 | MDR-TB | lineage2.2.1 | None |
ERR3639752 | MDR-TB | lineage2.2.1 | None |
SRR29051567 | MDR-TB | lineage4.3.4.2 | None |
ERR11043605 | MDR-TB | lineage4.2.1 | None |
SRR16370484 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29051349 | MDR-TB | lineage4.3.4.2 | None |
SRR29051339 | MDR-TB | lineage4.3.4.2 | None |
SRR29051297 | MDR-TB | lineage4.3.4.2 | None |
SRR29051366 | MDR-TB | lineage4.3.4.2 | None |
SRR1162764 | RR-TB | lineage4.8 | None |
SRR29050861 | MDR-TB | lineage4.3.4.2 | None |
SRR1723646 | MDR-TB | lineage2.2.1 | None |
SRR10380094 | MDR-TB | lineage4.2.1 | None |
ERR6866476 | RR-TB | lineage4.3.3 | None |
ERR4811326 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR6832240 | MDR-TB | lineage2.2.1 | None |
ERR551708 | MDR-TB | lineage4.1.2.1 | None |
SRR29050908 | MDR-TB | lineage4.3.4.2 | None |
SRR29051520 | MDR-TB | lineage4.3.4.2 | None |
SRR29081639 | MDR-TB | lineage4.3.2 | None |
SRR25207332 | MDR-TB | lineage2.2.1 | None |
SRR28859762 | MDR-TB | lineage2.2.1.2 | None |
SRR25207184 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29051296 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR6824468 | MDR-TB | lineage2.2.1 | cn |
SRR29051033 | MDR-TB | lineage4.3.4.2 | None |
SRR28706384 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02586062 | MDR-TB | lineage2.2.1 | za |
SRR29051298 | MDR-TB | lineage4.3.4.2 | None |
SRR9224978 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR29539140 | Pre-XDR-TB | lineage2.2.1 | None |
SRR9224931 | MDR-TB | lineage4.3.4.2 | None |
ERR5864112 | Pre-XDR-TB | lineage2.2.1 | None |
DRR130145 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29050664 | MDR-TB | lineage4.3.4.2 | None |
ERR4810943 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR4810993 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR4827574 | MDR-TB | lineage2.2.1 | None |
ERR13290273 | MDR-TB | lineage4.8 | None |
ERR2510549 | Pre-XDR-TB | lineage3 | pk |
SRR1723647 | MDR-TB | lineage2.2.1 | None |
ERR13291045 | MDR-TB | lineage4.9 | None |
SRR29539295 | MDR-TB | lineage2.2.1 | None |
ERR2510550 | Pre-XDR-TB | lineage3 | pk |
SAMN02414846 | MDR-TB | lineage4.8 | se |
SRR7657748 | MDR-TB | lineage2.2.1;lineage4.2.1 | None |
SRR2024887 | MDR-TB | lineage2.2.1 | cn |
SRR2024965 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR4811359 | MDR-TB | lineage4.4.2 | cn |
ERR502947 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4829053 | RR-TB | lineage4.6.2.2 | None |
ERR3148221 | MDR-TB | lineage4.3.3 | mx |
SRR1165587 | RR-TB | lineage4.8 | None |
SAMEA2534134 | MDR-TB | lineage4.1.2.1 | uz |
SRR1196678 | MDR-TB | lineage2.2.1 | None |
SRR25207371 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11488384 | MDR-TB | lineage2.2.1 | None |
SRR20969395 | MDR-TB | lineage2.2.1 | None |
SRR6824361 | MDR-TB | lineage2.2.1 | cn |
ERR2510201 | RR-TB | lineage4.3.3 | pe |
ERR11488365 | MDR-TB | lineage2.2.1 | None |
ERR11488818 | MDR-TB | lineage2.2.1 | None |
SRR25207355 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4810970 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR11081136 | MDR-TB | lineage3 | None |
ERR551708_ERR551707 | MDR-TB | lineage4.1.2.1 | None |
ERR13291043 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25389550 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4809204 | MDR-TB | lineage2.2.1 | za |
SRR1165468 | MDR-TB | lineage4.8 | None |
ERR11067839 | MDR-TB | lineage2.2.1 | None |
ERR4457829 | MDR-TB | lineage4.1.2.1 | None |
SRR26936923 | RR-TB | lineage2.2.1 | None |
ERR2516911 | Pre-XDR-TB | lineage2.2.1 | gb |
SRR25389552 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11043022 | MDR-TB | lineage4.3.3 | None |
SRR1723633 | MDR-TB | lineage2.2.1 | cn |
SRR6356970 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None |
SRR25207194 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29051013 | MDR-TB | lineage4.3.4.2 | None |
SRR14801788 | MDR-TB | lineage2.2.1 | None |
SRR29050647 | MDR-TB | lineage4.3.4.2 | None |
ERR4810467 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR13290271 | MDR-TB | lineage4.8 | None |
ERR4822583 | MDR-TB | lineage2.2.1 | tm |
SRR9224909 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR13583372 | MDR-TB | lineage4.3.4.2 | None |
SRR29051267 | MDR-TB | lineage4.3.4.2 | None |
SRR29050644 | MDR-TB | lineage4.3.4.2 | None |
SRR13583488 | MDR-TB | lineage4.3.4.2 | None |
SRR10040464 | MDR-TB | lineage2.2.1 | None |
SRR29050889 | MDR-TB | lineage4.3.4.2 | None |
SRR1723645 | MDR-TB | lineage2.2.1 | cn |
ERR2653186 | Pre-XDR-TB | lineage4.3.4.1 | None |
ERR11488721 | MDR-TB | lineage2.2.1 | None |
SRR29539651 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4810468 | MDR-TB | lineage2.2.1 | cn |
SRR069943 | MDR-TB | lineage2.2.1.1 | None |
SRR12142342 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1166865 | MDR-TB | lineage4.8 | None |
ERR4827792 | MDR-TB | lineage2.2.1 | None |
SRR6824362 | MDR-TB | lineage2.2.1 | cn |
ERR4796309 | Pre-XDR-TB | lineage1.1.2 | None |
ERR13284786 | MDR-TB | lineage2.2.1 | None |
SRR5153254 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539747 | MDR-TB | lineage2.2.1 | None |
SRR13583393 | MDR-TB | lineage4.3.4.2 | None |
SRR9225004 | MDR-TB | lineage4.3.4.2 | None |
SRR6356993 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None |
SRR18714875 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539763 | MDR-TB | lineage2.2.1 | None |
SRR25207225 | Pre-XDR-TB | lineage2.2.1 | None |
SRR20969901 | MDR-TB | lineage2.2.1 | None |
ERR11081218 | MDR-TB | lineage4.8 | None |
ERR4796792 | MDR-TB | lineage4.2.2.2 | in |
SRR29050684 | MDR-TB | lineage4.3.4.2 | None |
ERR13290272 | MDR-TB | lineage4.8 | None |
DRR130213 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4811354 | MDR-TB | lineage2.2.1 | cn |
ERR3275811 | MDR-TB | lineage4.1.2.1 | nl |
SRR9224991 | MDR-TB | lineage4.3.4.2 | None |
SRR1173223 | MDR-TB | lineage2.2.1 | None |
SRR13583383 | MDR-TB | lineage4.3.4.2 | None |
SRR29051559 | MDR-TB | lineage4.3.4.2 | None |
SRR29051491 | MDR-TB | lineage4.3.4.2 | None |
SRR9224926 | MDR-TB | lineage4.3.4.2 | None |
SRR25207327 | MDR-TB | lineage4.4.2 | None |
SRR27069420 | Pre-XDR-TB | lineage4.2.2 | None |
SRR6397810 | MDR-TB | lineage3 | ca |
SRR25207050 | MDR-TB | lineage2.2.1 | None |
SRR25207197 | MDR-TB | lineage2.2.1 | None |
SRR1166931 | RR-TB | lineage4.8 | None |
ERR2707131 | MDR-TB | lineage4.3.4.1 | cd |
SRR18715401 | MDR-TB | lineage2.2.1 | None |
ERR3794434 | MDR-TB | lineage2.2.1 | None |
SRR6824578 | MDR-TB | lineage2.2.1 | cn |
SRR9224944 | MDR-TB | lineage4.3.4.2 | None |
SRR10040252 | MDR-TB | lineage2.2.1 | None |
SRR29017042 | MDR-TB | lineage1.1.2 | None |
SRR29051540 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR1169140 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29539220 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29231832 | MDR-TB | lineage4.3.4.1 | None |
SRR29051590 | MDR-TB | lineage4.3.4.2 | None |
ERR13284648 | MDR-TB | lineage3 | None |
SRR28045245 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3287537 | MDR-TB | lineage4.3.4.1 | None |
SRR6824641 | MDR-TB | lineage2.2.1 | cn |
SRR25207362 | Pre-XDR-TB | lineage2.2.1 | None |
SRR6824601 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR25207083 | Pre-XDR-TB | lineage2.2.1 | None |
SRR11662525 | MDR-TB | lineage2.2.1 | None |
ERR551707 | MDR-TB | lineage4.1.2.1 | None |
SRR25515125 | MDR-TB | lineage2.2.1 | None |
SRR9224934 | MDR-TB | lineage4.3.4.2 | None |
SRR29681420 | MDR-TB | lineage2.2.1 | None |
SRR29050706 | MDR-TB | lineage4.3.4.2 | None |
ERR6866463 | RR-TB | lineage4.3.3 | None |
SRR25207377 | MDR-TB | lineage2.2.1 | None |
ERR4553767 | MDR-TB | lineage4.8 | None |
SRR29051348 | MDR-TB | lineage4.3.4.2 | None |
SRR29051275 | MDR-TB | lineage4.3.4.2 | None |
ERR4809305 | MDR-TB | lineage2.2.1 | za |
SRR29051597 | MDR-TB | lineage4.3.4.2 | None |
SRR13583476 | MDR-TB | lineage4.3.4.2 | None |
ERR4799460 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4800077 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4810949 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR25207189 | MDR-TB | lineage2.2.1 | None |
ERR3794358 | MDR-TB | lineage2.2.1 | None |
ERR13258452 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13284114 | MDR-TB | lineage2.2.1 | None |
SRR25206968 | Pre-XDR-TB | lineage2.2.1 | None |
SRR9224982 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR2515373 | MDR-TB | lineage2.2.1 | za |
ERR4811294 | XDR-TB | lineage2.2.1 | cn |
SAMN02419679 | Pre-XDR-TB | lineage2.2.1 | by |
SRR29050864 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | None |
SRR9224925 | MDR-TB | lineage4.3.4.2 | None |
SRR25206972 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25389551 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29050882 | MDR-TB | lineage4.3.4.2 | None |
SRR29681312 | MDR-TB | lineage2.2.1 | None |
SRR9224976 | MDR-TB | lineage4.3.4.2 | None |
ERR13284344 | MDR-TB | lineage4.2.1 | None |
ERR13285162 | MDR-TB | lineage4.8 | None |
ERR13284543 | MDR-TB | lineage4.3.3 | None |
SRR10305977 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1723632 | MDR-TB | lineage2.2.1 | cn |
SRR29539226 | Pre-XDR-TB | lineage2.2.1 | None |
SRR13583409 | MDR-TB | lineage4.3.4.2 | None |
SRR1163380 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1165520 | RR-TB | lineage4.8 | None |
ERR1034757 | MDR-TB | lineage4.3.3;lineage4.3.4.1 | pe |
SRR29051234 | MDR-TB | lineage4.3.4.2 | None |
ERR2307365 | MDR-TB | lineage2.2.1 | None |
SRR9224961 | MDR-TB | lineage4.3.4.2 | None |
SRR1163178 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2515633 | MDR-TB | lineage2.2.1 | za |
SRR13583396 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | None |
ERR4872268 | MDR-TB | lineage2.2.1 | None |
SRR6832202 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4798389 | Pre-XDR-TB | lineage2.2.1.1 | in |
SRR27069394 | Pre-XDR-TB | lineage4.4.2 | None |
ERR751486 | MDR-TB | lineage4.1.2.1 | pe |
SRR28394016 | RR-TB | lineage4.3.4.2 | None |
ERR502949 | MDR-TB | lineage2.2.1 | None |
ERR502944 | MDR-TB | lineage2.2.1 | None |
ERR9992933 | XDR-TB | lineage2.2.1 | None |
SRR2024882 | MDR-TB | lineage2.2.1 | cn |