ERR11067839
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4457829
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207191
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800326
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR21691101
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02414843
|
MDR-TB
|
lineage4.8
|
se
|
SRR25389552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723633
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR6356970
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.2.1
|
None
|
ERR6866463
|
RR-TB
|
lineage4.3.3
|
None
|
SRR28859651
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR29051013
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051275
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051567
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR11043605
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR16370484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799460
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29050647
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510549
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4822583
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR9224909
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR13258452
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29050644
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR13583488
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR10040464
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29050889
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1723646
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9224982
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4810468
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR069943
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR12142342
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166865
|
MDR-TB
|
lineage4.8
|
None
|
ERR4827792
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29050908
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29050864
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
None
|
SRR29050882
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR1873483
|
MDR-TB
|
lineage4.3.2.1
|
za
|
SAMN02586062
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR29539747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051298
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081218
|
MDR-TB
|
lineage4.8
|
None
|
ERR13284344
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10305977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539226
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502947
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827574
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13583383
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051559
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2307365
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9224961
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539295
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502949
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207327
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4798389
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR27069420
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SAMN02414846
|
MDR-TB
|
lineage4.8
|
se
|
SRR7657748
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR6866771
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR18715401
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305973
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305975
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3148221
|
MDR-TB
|
lineage4.3.3
|
mx
|
SRR29017042
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1169140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488384
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824361
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13284648
|
MDR-TB
|
lineage3
|
None
|
SRR28045245
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29050701
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR3794409
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662523
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN03246387
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2024965
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11488818
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207355
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551708_ERR551707
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6824601
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR751486
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR6397810
|
MDR-TB
|
lineage3
|
ca
|
ERR4553617
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR6879035
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.1
|
None
|
SRR9224934
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2516911
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR11043022
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23310870
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051273
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25207377
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801788
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553767
|
MDR-TB
|
lineage4.8
|
None
|
SRR29051597
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051349
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4800077
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4810467
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13290271
|
MDR-TB
|
lineage4.8
|
None
|
SRR25207189
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284114
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206968
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13583372
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051267
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1723645
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2653186
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
SRR10380094
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2707131
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR6866476
|
RR-TB
|
lineage4.3.3
|
None
|
SRR6824362
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551708
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207184
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284786
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051033
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25206972
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13583393
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR9225004
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR9224978
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR5864112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130145
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796792
|
MDR-TB
|
lineage4.2.2.2
|
in
|
SRR29050684
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13291045
|
MDR-TB
|
lineage4.9
|
None
|
ERR13284543
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4811354
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29050664
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4810993
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13290273
|
MDR-TB
|
lineage4.8
|
None
|
SRR29051491
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR9224926
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051234
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1163178
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13583396
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
None
|
SRR27069394
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1166931
|
RR-TB
|
lineage4.8
|
None
|
ERR9992933
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510550
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4829053
|
RR-TB
|
lineage4.6.2.2
|
None
|
SRR1174839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165587
|
RR-TB
|
lineage4.8
|
None
|
SRR1167123
|
MDR-TB
|
lineage4.8
|
None
|
SRR1196678
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824578
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR9224944
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR10040252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969395
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12118038
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13583418
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510666
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR10040429
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305614
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291043
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3273196
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR15316023
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551707
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR26936923
|
RR-TB
|
lineage2.2.1
|
None
|
SRR29050646
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29017037
|
MDR-TB
|
lineage4.8
|
None
|
SRR6257047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681420
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29050706
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR502944
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810942
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4829855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184296
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051348
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4809305
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR24709922
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639752
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13583476
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4810949
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29051339
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051297
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3794358
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051366
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1162764
|
RR-TB
|
lineage4.8
|
None
|
SRR29050861
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR775296
|
RR-TB
|
lineage4.3.3
|
pe
|
SAMEA2534134
|
MDR-TB
|
lineage4.1.2.1
|
uz
|
ERR2515373
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR4811294
|
XDR-TB
|
lineage2.2.1
|
cn
|
ERR11488721
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539651
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811326
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6832240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796309
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR29051520
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29081639
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR25207332
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28859762
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SAMN02419679
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR9224925
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051296
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR5153254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824468
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25389551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9224976
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28706384
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356993
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.2.1
|
None
|
SRR9224931
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR18714875
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207225
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024887
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13285162
|
MDR-TB
|
lineage4.8
|
None
|
SRR1723632
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR13583409
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13290272
|
MDR-TB
|
lineage4.8
|
None
|
DRR130213
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3275811
|
MDR-TB
|
lineage4.1.2.1
|
nl
|
ERR4810943
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR1163380
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165520
|
RR-TB
|
lineage4.8
|
None
|
ERR1034757
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.1
|
pe
|
SRR9224991
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1173223
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723647
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515633
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR4872268
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207050
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207197
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394016
|
RR-TB
|
lineage4.3.4.2
|
None
|
ERR4811359
|
MDR-TB
|
lineage4.4.2
|
cn
|
SRR15368792
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR3794434
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277863
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR29051540
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510201
|
RR-TB
|
lineage4.3.3
|
pe
|
ERR11488365
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29231832
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29051590
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4024582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1162739
|
MDR-TB
|
lineage4.8
|
None
|
ERR3287537
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR6824641
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4810970
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11081136
|
MDR-TB
|
lineage3
|
None
|
SRR25389550
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290270
|
MDR-TB
|
lineage4.8
|
None
|
SRR25206953
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25207100
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207186
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4809204
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR25207362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165468
|
MDR-TB
|
lineage4.8
|
None
|
SRR9224979
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25207083
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13583368
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR13583350
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR2024882
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25515125
|
MDR-TB
|
lineage2.2.1
|
None
|