lineage | Count |
---|---|
lineage2.2.1 | 46 |
lineage3 | 7 |
lineage4.4.1.1 | 41 |
lineage4.9 | 1 |
lineage6.3.1 | 4 |
lineage1.1.2 | 2 |
lineage1.2.1.2.1 | 10 |
lineage4.6.2.2 | 13 |
lineage4.7 | 7 |
lineage4.3.3 | 2 |
lineage4.1.2.1 | 5 |
lineage4.8;lineage4.3.3 | 3 |
lineage5 | 2 |
lineage2.2.1;lineage1.1.2 | 1 |
lineage3.1 | 4 |
lineage4.2.2.1 | 1 |
lineage6.2.2 | 1 |
lineage2.2.1.2 | 1 |
lineage2.2.2 | 2 |
lineage3.1.2.1 | 1 |
lineage4.4.1.1;lineage2.2.1 | 1 |
lineage4.3.4.1 | 3 |
lineage4.3 | 1 |
lineage2.2.1.1 | 4 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage4.1.2 | 1 |
1 | |
lineage3;lineage2.2.1 | 1 |
spoligotype | Count |
---|---|
None | 167 |
ID | Drug resistance | Lineage | Country iso2 | ERR2510159 | MDR-TB | lineage2.2.1 | pe | SAMEA2534554 | MDR-TB | lineage2.2.1 | uz | ERR2510190 | MDR-TB | lineage2.2.1 | pe | ERR2510237 | MDR-TB | lineage2.2.1 | pe | ERR2510443 | MDR-TB | lineage2.2.1 | pk | ERR2510216 | MDR-TB | lineage2.2.1 | pe | ERR2510424 | MDR-TB | lineage3 | pk | ERR551242 | MDR-TB | lineage4.4.1.1 | sz | ERR2516579 | MDR-TB | lineage4.9 | nl | SAMN02231174 | MDR-TB | lineage6.3.1 | ml | SRR5341314 | MDR-TB | lineage1.1.2 | in | ERR552599 | MDR-TB | lineage4.4.1.1 | sz | ERR552763 | MDR-TB | lineage4.4.1.1 | sz | SRR6046579 | MDR-TB | lineage1.2.1.2.1 | gb | SRR5535830 | MDR-TB | lineage4.6.2.2 | None | ERR2653214 | MDR-TB | lineage4.7 | None | ERR2707232 | RR-TB | lineage4.3.3 | cd | ERR4827642 | MDR-TB | lineage2.2.1 | None | SRR5709908 | MDR-TB | lineage2.2.1 | th | ERR5865571 | MDR-TB | lineage4.1.2.1 | None | SRR6046515 | MDR-TB | lineage1.2.1.2.1 | None | SRR6045039 | MDR-TB | lineage1.2.1.2.1 | gb | SRR6356992 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR6339643 | MDR-TB | lineage2.2.1 | au | SRR6356938 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR6356944 | Pre-XDR-TB | lineage4.8;lineage4.3.3 | None | ERR1035279 | MDR-TB | lineage4.7 | br | SRR6397420 | MDR-TB | lineage1.2.1.2.1 | ca | ERR4872135 | MDR-TB | lineage5 | None | ERR4872225 | MDR-TB | lineage4.6.2.2 | None | ERR4872239 | MDR-TB | lineage4.6.2.2 | None | SRR6964558 | MDR-TB | lineage2.2.1;lineage1.1.2 | None | ERR1034751 | MDR-TB | lineage2.2.1 | pe | ERR1035028 | MDR-TB | lineage3 | za | SAMN02053758 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR4872085 | MDR-TB | lineage4.6.2.2 | None | ERR4872184 | MDR-TB | lineage4.6.2.2 | None | ERR4872206 | MDR-TB | lineage4.6.2.2 | None | ERR4872205 | MDR-TB | lineage4.6.2.2 | None | SRR6964602 | MDR-TB | lineage3 | None | SRR9971343 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR833034 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR833152 | Pre-XDR-TB | lineage2.2.1 | None | SRR833175 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR031465 | MDR-TB | lineage3.1 | None | ERR1034787 | Pre-XDR-TB | lineage2.2.1 | pe | ERR1035284 | Pre-XDR-TB | lineage4.7 | br | ERR11044686 | MDR-TB | lineage4.2.2.1 | None | ERR1035326 | Pre-XDR-TB | lineage4.7 | br | ERR1035347 | MDR-TB | lineage4.7 | br | ERR10680126 | MDR-TB | lineage6.2.2 | None | ERR11043182 | MDR-TB | lineage1.1.2 | None | ERR1035314 | Pre-XDR-TB | lineage4.7 | br | ERR1035327 | Pre-XDR-TB | lineage4.7 | br | ERR114476 | MDR-TB | lineage3.1 | None | ERR3256142 | MDR-TB | lineage1.2.1.2.1 | ph | ERR3256270 | Pre-XDR-TB | lineage1.2.1.2.1 | ph | ERR3287755 | MDR-TB | lineage2.2.1 | pe | ERR3287396 | MDR-TB | lineage2.2.1 | pe | ERR3287706 | MDR-TB | lineage2.2.1 | pe | ERR3273194 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3287745 | MDR-TB | lineage2.2.1 | pe | ERR3287784 | MDR-TB | lineage2.2.1 | None | ERR3287799 | MDR-TB | lineage2.2.1 | pe | ERR3287856 | Pre-XDR-TB | lineage2.2.1 | pe | ERR3287805 | MDR-TB | lineage2.2.1 | pe | ERR4024750 | MDR-TB | lineage2.2.1 | None | ERR4423536 | RR-TB | lineage4.4.1.1 | None | ERR4423739 | MDR-TB | lineage3 | None | ERR4423631 | MDR-TB | lineage4.6.2.2 | None | ERR4423679 | MDR-TB | lineage3 | None | ERR4423535 | RR-TB | lineage4.4.1.1 | None | ERR4423632 | MDR-TB | lineage4.6.2.2 | None | ERR4423678 | MDR-TB | lineage3 | None | ERR4811158 | Pre-XDR-TB | lineage2.2.2 | cn | ERR4800141 | MDR-TB | lineage3.1.2.1 | None | ERR4809270 | MDR-TB | lineage4.4.1.1 | za | ERR4799746 | Pre-XDR-TB | lineage3 | in | ERR4810845 | MDR-TB | lineage2.2.2 | cn | ERR5865482 | MDR-TB | lineage4.1.2.1 | None | ERR4812110 | MDR-TB | lineage2.2.1 | None | ERR5865483 | MDR-TB | lineage4.1.2.1 | None | ERR5987288 | RR-TB | lineage4.4.1.1 | None | ERR5987194 | RR-TB | lineage4.4.1.1 | None | ERR6362251 | RR-TB | lineage4.4.1.1 | None | ERR5987393 | RR-TB | lineage4.4.1.1 | None | ERR6866782 | MDR-TB | lineage2.2.1 | None | ERR6362962 | RR-TB | lineage4.4.1.1 | None | ERR6866472 | MDR-TB | lineage2.2.1 | None | ERR6865768 | MDR-TB | lineage2.2.1 | None | ERR6866249 | MDR-TB | lineage2.2.1 | None | ERR6879043 | Pre-XDR-TB | lineage2.2.1 | None | ERR751385 | MDR-TB | lineage2.2.1 | pe | ERR775346 | MDR-TB | lineage2.2.1 | pe | ERR751390 | MDR-TB | lineage2.2.1 | pe | ERR775347 | MDR-TB | lineage2.2.1 | pe | ERR7910858 | MDR-TB | lineage2.2.1 | pe | ERR779914 | MDR-TB | lineage2.2.1 | pe | ERR8686207 | RR-TB | lineage4.4.1.1 | None | ERR7911373 | Pre-XDR-TB | lineage2.2.1 | pe | ERR8699170 | RR-TB | lineage4.4.1.1 | None | ERR8699138 | RR-TB | lineage4.4.1.1 | None | ERR8699171 | RR-TB | lineage4.4.1.1 | None | ERR8699169 | RR-TB | lineage4.4.1.1 | None | ERR8699180 | RR-TB | lineage4.4.1.1 | None | ERR8699730 | RR-TB | lineage4.4.1.1;lineage2.2.1 | None | ERR8975844 | RR-TB | lineage4.4.1.1 | None | ERR8774118 | RR-TB | lineage4.4.1.1 | None | ERR8774120 | RR-TB | lineage4.4.1.1 | None | ERR9117700 | MDR-TB | lineage1.2.1.2.1 | None | ERR9029847 | MDR-TB | lineage2.2.1 | None | ERR9119541 | MDR-TB | lineage5 | None | ERR9119491 | MDR-TB | lineage4.6.2.2 | None | ERR9119582 | MDR-TB | lineage4.6.2.2 | None | ERR9119631 | MDR-TB | lineage4.6.2.2 | None | ERR9119619 | MDR-TB | lineage4.6.2.2 | None | ERR9120085 | RR-TB | lineage4.4.1.1 | None | ERR9119991 | RR-TB | lineage4.4.1.1 | None | ERR9120032 | RR-TB | lineage4.4.1.1 | None | ERR9119948 | RR-TB | lineage4.4.1.1 | None | ERR9119949 | RR-TB | lineage4.4.1.1 | None | ERR9120086 | RR-TB | lineage4.4.1.1 | None | ERR9907688 | MDR-TB | lineage4.3.4.1 | None | ERR9907720 | MDR-TB | lineage4.3.4.1 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | SRR10315584 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1011464 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR15600356 | MDR-TB | lineage2.2.1.1 | None | SRR10869225 | RR-TB | lineage4.4.1.1 | None | SRR1103387 | MDR-TB | lineage6.3.1 | None | SRR1162479 | MDR-TB | lineage6.3.1 | None | SRR1180314 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1180392 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1181106 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR14801815 | MDR-TB | lineage4.1.2.1 | None | SRR1062836 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR10808411 | MDR-TB | lineage2.2.1 | None | SRR1162789 | MDR-TB | lineage6.3.1 | None | SRR1181217 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR16088240 | MDR-TB | lineage4.1.2.1;lineage2.2.1 | None | SRR15600385 | MDR-TB | lineage2.2.1.1 | None | SRR19115711 | MDR-TB | lineage1.2.1.2.1 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR2100324 | MDR-TB | lineage3.1 | None | SRR20969423 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424774 | MDR-TB | lineage4.3.3 | None | ERR9806630 | MDR-TB | lineage2.2.1.1 | None | ERR11082460 | MDR-TB | lineage4.1.2 | None | SRR23938695 | MDR-TB | lineage2.2.1 | None | SRR5485558 | RR-TB | None | SRR10828633 | MDR-TB | lineage1.2.1.2.1 | None | ERR10610372 | MDR-TB | lineage2.2.1.1 | None | ERR4813814 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR4813962 | Pre-XDR-TB | lineage4.1.2.1 | br | SRR6797542 | MDR-TB | lineage2.2.1 | None | SRR3105800 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4813181 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813100 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813402 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813407 | Pre-XDR-TB | lineage2.2.1 | pe | ERR2184235 | MDR-TB | lineage2.2.1 | pe | ERR4813412 | Pre-XDR-TB | lineage2.2.1 | pe | ERR553282 | MDR-TB | lineage4.4.1.1 | sz | SAMN02585966 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR2513027 | MDR-TB | lineage1.2.1.2.1 | gb | SAMN02350423 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR234111 | MDR-TB | lineage3.1 | np |
---|