SRR22873602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041743
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR4800162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553800
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8773992
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799058
|
MDR-TB
|
lineage3.1.2
|
in
|
ERR13267119
|
HR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR29017232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1010998
|
RR-TB
|
lineage4.8
|
None
|
SRR16088553
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782325
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517719
|
MDR-TB
|
lineage2.2.1
|
ch
|
SRR069957
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR3743488
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284538
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3256220
|
MDR-TB
|
lineage1.2.1.2.1
|
ph
|
SRR7516327
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987307
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR133972
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR5153926
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040295
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR7755766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035298
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR11043498
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2041799
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1003112
|
RR-TB
|
lineage4.8
|
None
|
SRR15368720
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368774
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723841
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10380021
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041752
|
MDR-TB
|
lineage4.7
|
rs
|
SRR7755691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969656
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265787
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290772
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR069943
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR7516426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782486
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748176
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800282
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR12006585
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11043037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265110
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284645
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR6479539
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310868
|
XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR13265371
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266348
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342635
|
MDR-TB
|
lineage4.8
|
None
|
ERR553168_ERR553169
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2200148
|
MDR-TB
|
lineage2.2.1
|
rs
|
SAMN02414972
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR13266304
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975785
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911081
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR21887702
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6256966
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827350
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR10397199
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907678
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR14802011
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799635
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4811869
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR16156738
|
MDR-TB
|
lineage2.2.1.1;lineage4.1.1.3
|
None
|
ERR11068893
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2516214
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR21887661
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911334
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR13265689
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265938
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24466741
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR20632797
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866470
|
Other
|
lineage2.2.1
|
None
|
ERR7737830
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910963
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR13265536
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1003110
|
RR-TB
|
lineage4.8
|
None
|
ERR2041715
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25514970
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041800
|
MDR-TB
|
lineage2.2.1
|
rs
|
SRR10379945
|
RR-TB
|
lineage4.8
|
None
|
SRR11662593
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351445
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR29341557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872291
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR671866
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10500317
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR10762367
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420439
|
Other
|
lineage2.2.1
|
None
|
SRR25206934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207278
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR688016
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28046251
|
MDR-TB
|
lineage3
|
None
|
ERR2653222
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2041706
|
MDR-TB
|
lineage2.2.1
|
rs
|
SRR15014672
|
MDR-TB
|
lineage3
|
None
|
SRR28498695
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28044988
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR11662576
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR13265512
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070362
|
MDR-TB
|
lineage3
|
None
|
SRR28044356
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12796610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510389
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3287735
|
MDR-TB
|
lineage4
|
pe
|
SRR8651655
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13430438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662362
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
ERR13265247
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13264987
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772535
|
RR-TB
|
lineage3
|
None
|
SRR29772633
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR13265435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9125036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510253
|
RR-TB
|
lineage4.8
|
pk
|
SRR1162848
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801351
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081047
|
Pre-XDR-TB
|
lineage4.1
|
None
|
ERR11081191
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393417
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13267118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3256219
|
MDR-TB
|
lineage1.2.1.2.1
|
ph
|
SRR16370539
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798127
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13180367
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972169
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801941
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081126
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20632820
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424930
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR29273637
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13266314
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265807
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265817
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831104
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420462
|
RR-TB
|
lineage2.2.1
|
None
|
ERR13281467
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265440
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23252672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12118014
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13265777
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498492
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393620
|
MDR-TB
|
lineage4
|
None
|
ERR8665569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29289188
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR13265503
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651570
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4831639
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR3273140
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265834
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276316
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120109
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR7645960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827883
|
Pre-XDR-TB
|
lineage3;lineage4.2.2.2
|
None
|
SRR5153218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265542
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23861895
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16058701
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865047
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665568
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6824285
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29273975
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11662251
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266281
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772546
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4800064
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13276287
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290609
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782645
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041703
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266318
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265966
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380187
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265171
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081287
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800089
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1034679
|
MDR-TB
|
lineage4.3.3
|
co
|
SRR21887772
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316228
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041705
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13355775
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552238
|
RR-TB
|
lineage2.2.1
|
None
|
SRR25207306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865049
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044471
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA2534507
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR1049688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737648
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552240_ERR552238_ERR552239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035283
|
MDR-TB
|
lineage4.3.3
|
br
|
SRR24256134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1003130
|
RR-TB
|
lineage4.8
|
None
|
SAMN02360629
|
RR-TB
|
lineage4.8
|
ug
|
SRR16370392
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887750
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830904
|
Pre-XDR-TB
|
lineage2.2.1.1
|
np
|
SRR12420418
|
RR-TB
|
lineage2.2.1
|
None
|
SRR12420444
|
RR-TB
|
lineage2.2.1
|
None
|
SRR26937092
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062883
|
MDR-TB
|
lineage3.1.2.1;lineage4.3.4.2
|
None
|
SRR11972386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22251790
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516909
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
ERR7975646
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10465859
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR067516
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6785501
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276144
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1165437
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351442
|
HR-TB
|
lineage3.1
|
None
|
ERR2516536
|
MDR-TB
|
lineage2.2.1
|
nl
|
SRR14801819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665712
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273142
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13266692
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4800450
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR552165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11567811
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049656
|
RR-TB
|
lineage4.8
|
None
|
SRR10380023
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287477
|
MDR-TB
|
lineage4
|
pe
|
SRR023451
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4813173
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR13265782
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937114
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535185
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR13265564
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041704
|
MDR-TB
|
lineage2.2.1
|
rs
|
SRR1577830
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199130
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR5865684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872305
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265645
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910897
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR13265791
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR13265844
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035333
|
Pre-XDR-TB
|
lineage4.1.2.1
|
br
|
SRR10040178
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1168974
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671818
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25515559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827489
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2.1
|
None
|
ERR552239
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498685
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1140694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046241
|
MDR-TB
|
lineage3
|
None
|
ERR2510572
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335740
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR29539820
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29681328
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29681228
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR29289187
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR30180246
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30180384
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041685
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553169
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02360624
|
RR-TB
|
lineage4.8
|
ug
|
SAMN02403500
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR10040153
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802266
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266228
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516382
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR1167245
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044205
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351661
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261893
|
MDR-TB
|
lineage4
|
None
|
ERR13266271
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1140681
|
MDR-TB
|
lineage3.1.2.1;lineage4.3.4.2
|
None
|
ERR13265180
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266020
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265609
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034690
|
MDR-TB
|
lineage3.1.2
|
in
|
SRR1723735
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723808
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25207284
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653169
|
MDR-TB
|
lineage4.3.4
|
None
|
ERR3639746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13232612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6484978
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206853
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798532
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865048
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265750
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266179
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041701
|
MDR-TB
|
lineage4.7
|
None
|
ERR2517073
|
MDR-TB
|
lineage4.6.2.2
|
gb
|
ERR9119484
|
MDR-TB
|
lineage4.6.4
|
None
|
ERR13265375
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265797
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13259989
|
MDR-TB
|
lineage4.8
|
None
|
ERR13265378
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1555046
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR13265216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002884
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645789
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310855
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4808876
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR6824636
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4276855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737789
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR7911189
|
MDR-TB
|
lineage4.8
|
za
|
ERR8665863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872324
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265980
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119503
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR1003109
|
RR-TB
|
lineage4.8
|
None
|
SRR1062917
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782303
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13265479
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265899
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393984
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4012000
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR15014776
|
MDR-TB
|
lineage1.1.2
|
None
|
SAMN02360627
|
RR-TB
|
lineage4.8
|
ug
|
ERR5865946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29016947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872191
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13290608
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910873
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR7911064
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR5709781
|
MDR-TB
|
lineage4.2.2
|
th
|
SRR7516427
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265502
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096631
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096566
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040172
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311019
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29055877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651559
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13265009
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265973
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02381024
|
RR-TB
|
lineage4.8
|
ug
|
ERR13266310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592324
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797537
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR23310838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7975662
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3273207
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4829729
|
Pre-XDR-TB
|
lineage4.7
|
it
|
SRR13232647
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662458
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR11081612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232745
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829964
|
MDR-TB
|
lineage3.1.2.1
|
pk
|
SRR14334195
|
Other
|
lineage2.2.1
|
None
|
ERR2041690
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516599
|
MDR-TB
|
lineage4
|
pe
|
ERR13285794
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265131
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911291
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR13265811
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207295
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801973
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2864261
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5865947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865948
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR137255
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR28467043
|
RR-TB
|
lineage2.2.1
|
None
|
SRR5817469
|
Pre-XDR-TB
|
lineage2.2.1
|
au
|
ERR13265757
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR671727
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR7645825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273123
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828636
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR11080935
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR21031706
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043973
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256203
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR688049
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR5866471
|
Other
|
lineage2.2.1
|
None
|
SRR1166870
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11156387
|
MDR-TB
|
lineage2.2.1;lineage4.3.4.1
|
None
|
SRR1167080
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287453
|
MDR-TB
|
lineage2.2.1
|
pe
|
ERR4872078
|
MDR-TB
|
lineage4.6.4
|
None
|
ERR5866472
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800378
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR12420431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120110
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR25206871
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13265263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12199484
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261243
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266912
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831254
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR5865936
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917761
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR25207162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762373
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068884
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1062914
|
RR-TB
|
lineage4.8
|
None
|
ERR4796786
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR15014687
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872292
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755739
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014694
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13232509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827543
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SAMN03246463
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR23311008
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748359
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510361
|
Pre-XDR-TB
|
lineage2.2.1
|
pk
|
ERR4829401
|
MDR-TB
|
lineage4.1.2.1
|
it
|
ERR11003793
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR1035337
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR2041691
|
MDR-TB
|
lineage2.2.1
|
rs
|
SRR23310927
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972346
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5486882
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3256203
|
MDR-TB
|
lineage4.3.4.1
|
ph
|
ERR13284082
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831794
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420370
|
RR-TB
|
lineage2.2.1
|
None
|
ERR13290874
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910971
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR2041735
|
MDR-TB
|
lineage4.7
|
rs
|
ERR5865046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743384
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257089
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR987775
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR19276637
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6914119
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796836
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR6511610
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14781850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762261
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041694
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21732150
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035361
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR751555
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR13265636
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131008
|
MDR-TB
|
lineage4.7
|
None
|
ERR7911112
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR11798605
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11567823
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265416
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665713
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276318
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035299
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR11043463
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11972190
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29385290
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515558
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715038
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393595
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13249493
|
MDR-TB
|
lineage4.5
|
None
|
SRR28351365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28646107
|
MDR-TB
|
lineage4.7
|
None
|
ERR1034584
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510245
|
MDR-TB
|
lineage3
|
pk
|
ERR2517115
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
SRR8651614
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13290606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265402
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798738
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR16088214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21276943
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310879
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR23311051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829049
|
MDR-TB
|
lineage4.7
|
it
|
SRR14782265
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671779
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13265065
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265898
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553168
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872097
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR6256998
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4553989
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794549
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802157
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13265763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284576
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276172
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394114
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13265134
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797510
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13265093
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798666
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02584583
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR1173261
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802046
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093664
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723734
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534455
|
Pre-XDR-TB
|
lineage2.2.1
|
uz
|
ERR552165_ERR552164
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165340
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972390
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305621
|
RR-TB
|
lineage2.2.1
|
None
|
SRR26937086
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1049687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10306029
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1140675
|
RR-TB
|
lineage4.8
|
None
|
SRR8651593
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR9119589
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827380
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR14781979
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276884
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035304
|
MDR-TB
|
lineage4.3.3
|
br
|
SAMN02381027
|
Pre-XDR-TB
|
lineage2.2.1
|
ug
|
SRR20632776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831804
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02360631
|
RR-TB
|
lineage4.8
|
ug
|
SRR1003131
|
RR-TB
|
lineage4.8
|
None
|
SRR28646115
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR12420275
|
RR-TB
|
lineage2.2.1
|
None
|
SRR15316443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824657
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR8380876
|
MDR-TB
|
lineage1.1.2
|
in
|
SRR10869239
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR1034617
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2041702
|
MDR-TB
|
lineage4.7
|
None
|
SRR21887768
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762232
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040325
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035295
|
MDR-TB
|
lineage4.1.2.1
|
br
|
SRR29772373
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR3794530
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26936938
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR11044163
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175338
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1010997
|
RR-TB
|
lineage4.8
|
None
|
ERR10748226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828957
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29358142
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651587
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR1003111
|
RR-TB
|
lineage4.8
|
None
|
SRR10040183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552047
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR29093496
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR21576622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911287
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
SRR21277683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|