lineage | Count |
---|---|
lineage2.2.2 | 46 |
lineage2.2.1 | 71 |
lineage4.7 | 9 |
lineage2.2.1.1 | 31 |
lineage2.2.1;lineage4.4.2 | 1 |
lineage4.2.2.2 | 1 |
lineage4.2.2.1 | 8 |
lineage4.4.2 | 6 |
lineage4.3.3 | 31 |
lineage4.1.2.1 | 13 |
lineage2.2.2;lineage4 | 1 |
lineage2.2.1.1;lineage2.2.2 | 1 |
lineage2.2.1;lineage4.8 | 1 |
lineage4.1.1.3 | 4 |
lineage4.2.2 | 1 |
lineage2.2.1.1;lineage3 | 2 |
lineage4.9 | 1 |
lineage3 | 3 |
lineage4.6.2.2 | 1 |
lineage2.2.1;lineage4 | 1 |
lineage4.8 | 2 |
lineage4.3.1 | 1 |
lineage4.1.2.1;lineage4.3.3 | 1 |
lineage4.3.2 | 1 |
lineage4.5 | 3 |
lineage4 | 1 |
lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
lineage4.1.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 244 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None |
SRR3082103 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1165529 | MDR-TB | lineage4.7 | None |
ERR4798155 | Pre-XDR-TB | lineage2.2.1.1 | in |
SRR12062499 | Pre-XDR-TB | lineage2.2.1;lineage4.4.2 | None |
SRR22175213 | XDR-TB | lineage2.2.1 | None |
ERR10225494 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR6356941 | MDR-TB | lineage2.2.1 | None |
SRR15014747 | MDR-TB | lineage4.2.2.2 | None |
ERR2041738 | MDR-TB | lineage4.2.2.1 | rs |
SRR1144807 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1144776 | Pre-XDR-TB | lineage2.2.2 | None |
SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4819542 | MDR-TB | lineage2.2.1 | gb |
SRR1144783 | Pre-XDR-TB | lineage2.2.2 | None |
SRR21747030 | MDR-TB | lineage2.2.1 | None |
ERR4796449 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR4796509 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4799352 | Pre-XDR-TB | lineage2.2.1.1 | in |
SRR29093724 | Pre-XDR-TB | lineage2.2.1 | None |
SRR22137433 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02360619 | Pre-XDR-TB | lineage2.2.2 | kr |
SAMN02398693 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR25207107 | MDR-TB | lineage4.4.2 | None |
SRR25207264 | Pre-XDR-TB | lineage2.2.1 | None |
DRR130162 | MDR-TB | lineage2.2.1 | None |
SRR1013563 | MDR-TB | lineage2.2.2 | None |
ERR2041790 | MDR-TB | lineage4.2.2.1 | None |
ERR13290710 | XDR-TB | lineage2.2.1 | None |
SRR6356926 | MDR-TB | lineage2.2.1 | None |
SRR15465759 | MDR-TB | lineage2.2.1 | None |
ERR4830962 | Pre-XDR-TB | lineage2.2.1 | np |
ERR13276413 | MDR-TB | lineage2.2.1 | None |
SRR1013668 | Pre-XDR-TB | lineage2.2.2 | None |
ERR13266659 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813868 | MDR-TB | lineage4.3.3 | br |
ERR4813897 | MDR-TB | lineage4.3.3 | None |
ERR4813911 | MDR-TB | lineage4.3.3 | None |
ERR13266691 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1049063 | Pre-XDR-TB | lineage2.2.2 | None |
SAMN02398711 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR3085345 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13285722 | MDR-TB | lineage2.2.1 | None |
ERR11138653 | Pre-XDR-TB | lineage2.2.2 | None |
SRR28393755 | MDR-TB | lineage4.1.2.1 | None |
SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None |
ERR4809257 | MDR-TB | lineage2.2.1.1;lineage2.2.2 | za |
SRR1013543 | Pre-XDR-TB | lineage2.2.2 | None |
SRR12062500 | Pre-XDR-TB | lineage2.2.1 | None |
SRR28706549 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1013669 | Pre-XDR-TB | lineage2.2.2 | None |
SRR22137391 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13290807 | XDR-TB | lineage2.2.1 | None |
ERR2653075 | Pre-XDR-TB | lineage4.3.3 | None |
SRR25827780 | XDR-TB | lineage2.2.1;lineage4.8 | None |
ERR4813858 | MDR-TB | lineage4.3.3 | br |
SRR29093111 | MDR-TB | lineage4.1.1.3 | None |
SRR22137467 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4799862 | Pre-XDR-TB | lineage2.2.1.1 | in |
SRR29094370 | RR-TB | lineage4.1.1.3 | None |
ERR2041796 | MDR-TB | lineage4.2.2.1 | rs |
ERR4813883 | MDR-TB | lineage4.3.3 | None |
SRR1013679 | Pre-XDR-TB | lineage2.2.2 | None |
SRR25827423 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR4816959 | MDR-TB | lineage2.2.1 | None |
SRR5817465 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR10040423 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2653187 | Pre-XDR-TB | lineage4.3.3 | None |
ERR13290552 | MDR-TB | lineage4.7 | None |
SRR27107251 | Pre-XDR-TB | lineage4.3.3 | None |
SRR1723876 | RR-TB | lineage2.2.1 | None |
SRR1144790 | Pre-XDR-TB | lineage2.2.2 | None |
SRR22137419 | Pre-XDR-TB | lineage2.2.1 | None |
SRR26937101 | MDR-TB | lineage4.2.2 | None |
ERR2653146 | Pre-XDR-TB | lineage4.3.3 | None |
ERR1034785 | MDR-TB | lineage4.1.2.1 | pe |
SRR1013564 | MDR-TB | lineage2.2.2 | None |
ERR2041785 | Pre-XDR-TB | lineage4.2.2.1 | rs |
SRR25827674 | XDR-TB | lineage2.2.1.1;lineage3 | None |
ERR13290550 | MDR-TB | lineage4.7 | None |
ERR3287842 | MDR-TB | lineage4.1.2.1 | pe |
ERR4822360 | MDR-TB | lineage2.2.1 | None |
SRR28044467 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR4797471 | Pre-XDR-TB | lineage4.9 | in |
ERR4813889 | MDR-TB | lineage4.3.3 | None |
ERR4813969 | MDR-TB | lineage4.3.3 | br |
SRR1013680 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29289277 | Pre-XDR-TB | lineage3 | None |
SRR28046072 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR28706536 | MDR-TB | lineage2.2.1 | None |
ERR7910872 | MDR-TB | lineage4.1.2.1 | pe |
ERR7912726 | MDR-TB | lineage4.1.2.1 | pe |
ERR2653107 | Pre-XDR-TB | lineage4.3.3 | None |
ERR1679636 | MDR-TB | lineage4.6.2.2 | ng |
ERR4796398 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR4810628 | MDR-TB | lineage4.4.2 | cn |
ERR502959 | RR-TB | lineage4.4.2 | None |
ERR4799519 | Pre-XDR-TB | lineage2.2.1 | in |
SRR21747019 | XDR-TB | lineage2.2.1 | None |
SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None |
ERR2041734 | MDR-TB | lineage4.2.2.1 | rs |
ERR2510599 | MDR-TB | lineage4.8 | None |
ERR4800245 | MDR-TB | lineage2.2.1.1 | None |
SAMN02360613 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048864 | MDR-TB | lineage2.2.2 | None |
SRR1166868 | MDR-TB | lineage4.7 | None |
SRR13180331 | Pre-XDR-TB | lineage4.3.1 | None |
SRR28045809 | XDR-TB | lineage2.2.1.1 | None |
ERR13258499 | MDR-TB | lineage2.2.1 | None |
SRR22137479 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813884 | MDR-TB | lineage4.3.3 | br |
ERR4827912 | MDR-TB | lineage2.2.1 | None |
ERR4799743 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR4813953 | RR-TB | lineage4.1.2.1;lineage4.3.3 | br |
SRR6785441 | MDR-TB | lineage2.2.1 | None |
SRR28044953 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR15661592 | MDR-TB | lineage4.8 | None |
SRR22137435 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13260068 | MDR-TB | lineage4.1.2.1 | None |
SRR3105792 | Pre-XDR-TB | lineage3 | None |
ERR11138650 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4813872 | MDR-TB | lineage4.3.3 | None |
ERR2653211 | MDR-TB | lineage4.3.3 | None |
SRR22424757 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR4799231 | HR-TB | lineage2.2.1.1 | in |
SRR22137468 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1144813 | Pre-XDR-TB | lineage2.2.2 | None |
SRR25827645 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR1723976 | RR-TB | lineage4.4.2 | cn |
SRR26112776 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02398698 | Pre-XDR-TB | lineage2.2.2 | kr |
SAMN02398696 | Pre-XDR-TB | lineage2.2.2 | kr |
ERR4798274 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4799658 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR13266394 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4800497 | Pre-XDR-TB | lineage2.2.1 | in |
SRR1049062 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4813876 | MDR-TB | lineage4.3.3 | br |
SRR1013544 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4798428 | MDR-TB | lineage2.2.1.1 | in |
ERR4813891 | Pre-XDR-TB | lineage4.3.3 | None |
SRR1048843 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4798997 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4812243 | MDR-TB | lineage4.1.2.1 | None |
ERR4797611 | Pre-XDR-TB | lineage2.2.1 | in |
SRR22137418 | Pre-XDR-TB | lineage2.2.1 | None |
ERR776661 | MDR-TB | lineage4.3.2 | None |
ERR4813852 | MDR-TB | lineage4.3.3 | br |
SRR1144749 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29681277 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13266696 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29274738 | RR-TB | lineage4.3.3 | None |
ERR2041791 | MDR-TB | lineage4.2.2.1 | rs |
SRR1013553 | MDR-TB | lineage2.2.2 | None |
ERR13290875 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR3287845 | Pre-XDR-TB | lineage4.1.2.1 | pe |
SRR1048842 | Pre-XDR-TB | lineage2.2.2 | None |
SRR11662465 | MDR-TB | lineage4.5 | None |
SAMN02398712 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR29093938 | Pre-XDR-TB | lineage2.2.2 | None |
SRR22137402 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11081227 | MDR-TB | lineage2.2.1 | None |
ERR11082695 | MDR-TB | lineage4.3.3 | None |
ERR11138648 | Pre-XDR-TB | lineage2.2.2 | None |
ERR12118059 | MDR-TB | lineage4.1.2.1 | None |
SRR29274779 | RR-TB | lineage4.3.3 | None |
ERR13266119 | Pre-XDR-TB | lineage2.2.1 | None |
SRR27107265 | Pre-XDR-TB | lineage4.3.3 | None |
ERR13266079 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813824 | Pre-XDR-TB | lineage4.3.3 | None |
ERR11138658 | Pre-XDR-TB | lineage2.2.2 | None |
SRR25206987 | RR-TB | lineage2.2.1.1 | None |
SRR29772818 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR13266757 | Pre-XDR-TB | lineage3 | None |
SRR21576673 | XDR-TB | lineage2.2.1 | None |
ERR2179644 | RR-TB | lineage4.4.2 | cn |
SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None |
SRR30180347 | XDR-TB | lineage2.2.1 | None |
SRR25827812 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None |
ERR8773880 | RR-TB | lineage4.1.2.1 | None |
ERR4797898 | XDR-TB | lineage2.2.1 | in |
SRR29681318 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13284828 | MDR-TB | lineage4.3.3 | None |
ERR6879041 | MDR-TB | lineage4.1.2.1 | None |
SRR25827435 | XDR-TB | lineage2.2.1.1 | None |
ERR4800081 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR3273101 | RR-TB | lineage4.5 | None |
ERR13262066 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2041712 | MDR-TB | lineage4.2.2.1 | rs |
SRR1162802 | MDR-TB | lineage4.7 | None |
SAMN02398713 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR25827869 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR10762235 | MDR-TB | lineage2.2.1 | None |
ERR4827958 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4799516 | MDR-TB | lineage2.2.1.1 | in |
SAMN02414953 | MDR-TB | lineage4.7 | se |
SRR29274063 | MDR-TB | lineage4 | None |
ERR4813032 | RR-TB | lineage4.1.1.3 | pe |
SRR6824347 | RR-TB | lineage4.4.2 | cn |
SRR22137428 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8773878 | RR-TB | lineage4.1.2.1 | None |
SRR22137471 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4798295 | Pre-XDR-TB | lineage2.2.1.1 | in |
ERR8975766 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR1047984 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1049075 | Pre-XDR-TB | lineage2.2.2 | None |
SRR1048863 | MDR-TB | lineage2.2.2 | None |
SRR1049074 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4813877 | MDR-TB | lineage4.3.3 | br |
ERR4813774 | MDR-TB | lineage4.3.3 | br |
ERR4813860 | MDR-TB | lineage4.3.3 | br |
ERR13193998 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4813881 | Pre-XDR-TB | lineage4.3.3 | None |
ERR4798816 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | in |
ERR757159 | MDR-TB | lineage4.1.2.1.1 | ar |
SRR22137478 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4830910 | Pre-XDR-TB | lineage2.2.1 | np |
ERR7975671 | MDR-TB | lineage2.2.1 | None |
SAMN02398704 | Pre-XDR-TB | lineage2.2.2 | kr |
SRR1144780 | Pre-XDR-TB | lineage2.2.2 | None |
SRR15014750 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR15506898 | MDR-TB | lineage2.2.1 | None |
SRR10040334 | MDR-TB | lineage2.2.1 | None |
ERR2041737 | MDR-TB | lineage4.2.2.1 | None |
SRR5153605 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16915730 | RR-TB | lineage4.1.1.3 | None |
ERR13290551 | MDR-TB | lineage4.7 | None |
ERR4799999 | MDR-TB | lineage2.2.1.1 | in |
ERR4813900 | MDR-TB | lineage4.3.3 | br |
SRR28045563 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR13290553 | MDR-TB | lineage4.7 | None |
SAMN02360551 | Pre-XDR-TB | lineage2.2.2 | kr |
ERR3287841 | MDR-TB | lineage4.1.2.1 | pe |
ERR4797975 | Pre-XDR-TB | lineage2.2.1 | in |
ERR4813828 | XDR-TB | lineage4.3.3 | None |
SRR8351921 | Pre-XDR-TB | lineage2.2.1 | None |
SRR15506909 | MDR-TB | lineage2.2.1 | None |
SAMN02360561 | MDR-TB | lineage2.2.2 | kr |
ERR4813874 | MDR-TB | lineage4.3.3 | None |
SRR28046209 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1165601 | MDR-TB | lineage4.7 | None |
SRR11662446 | MDR-TB | lineage4.5 | None |