ERR4800245
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4809257
|
MDR-TB
|
lineage2.2.2;lineage2.2.1.1
|
za
|
ERR4813876
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813852
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813884
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813877
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813858
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813900
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813969
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813953
|
RR-TB
|
lineage4.3.3;lineage4.1.2.1
|
br
|
ERR4813860
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR8975766
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR6879041
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4812243
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813774
|
MDR-TB
|
lineage4.3.3
|
br
|
ERR4813868
|
MDR-TB
|
lineage4.3.3
|
br
|
SRR22137471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16915730
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR22137428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107251
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR776661
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR22137468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662465
|
MDR-TB
|
lineage4.5
|
None
|
ERR7975671
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22137467
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137435
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773878
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR22137478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773880
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR1013544
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11662446
|
MDR-TB
|
lineage4.5
|
None
|
SRR1013543
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013553
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013563
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013554
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013679
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013564
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013577
|
MDR-TB
|
lineage2.2
|
None
|
SRR1013622
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013669
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013578
|
MDR-TB
|
lineage2.2
|
None
|
SRR1013621
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013668
|
Pre-XDR-TB
|
lineage2.2
|
None
|
SRR1013680
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048843
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049007
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048852
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR1048864
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048886
|
MDR-TB
|
lineage2.2
|
None
|
SRR1049006
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048842
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048853
|
Pre-XDR-TB
|
lineage4;lineage2.2.2
|
None
|
SRR1048863
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048885
|
MDR-TB
|
|
None
|
SRR1049074
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049063
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049062
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049075
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1050529
|
Other
|
lineage4.9
|
None
|
SRR10851637
|
Sensitive
|
lineage4.3.3
|
None
|
SRR1144780
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1047984
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144749
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144783
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144776
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144790
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144807
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144813
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1165601
|
MDR-TB
|
lineage4.7
|
None
|
SRR1165529
|
MDR-TB
|
lineage4.7
|
None
|
SRR1162802
|
MDR-TB
|
lineage4.7
|
None
|
SRR15014747
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1166868
|
MDR-TB
|
lineage4.7
|
None
|
SRR1173277
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR13180331
|
Pre-XDR-TB
|
lineage4.3.1
|
None
|
SRR15465759
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014750
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR15661592
|
MDR-TB
|
lineage4.8
|
None
|
SRR15506909
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15506898
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1791764
|
Other
|
La1.8.1
|
None
|
SRR1791865
|
Other
|
La1.8.1
|
None
|
SRR1791838
|
Other
|
La1.8.1
|
None
|
SRR1792124
|
Other
|
La1.8.1
|
None
|
SRR1792089
|
Other
|
La1.8.1
|
None
|
SRR1792486
|
Other
|
La1.7.1
|
None
|
SRR1792506
|
Other
|
La1.8.1
|
None
|
SRR1792495
|
Other
|
La1.7.1
|
None
|
SRR1792499
|
Other
|
La1.7.1
|
None
|
SRR25206987
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR2100089
|
Sensitive
|
lineage3
|
None
|
ERR11138658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21576673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11138648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11138650
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827430
|
Pre-XDR-TB
|
lineage4;lineage2.2.1
|
None
|
SRR25827503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747030
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175213
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424757
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11081227
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11138653
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025654
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR22137391
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10610203
|
RR-TB
|
|
None
|
SRR22137433
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137419
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107265
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26937101
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR25207107
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR25207264
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26112776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827674
|
XDR-TB
|
lineage3;lineage2.2.1.1
|
None
|
SRR25827423
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827812
|
Pre-XDR-TB
|
lineage3;lineage2.2.1.1
|
None
|
ERR4813874
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827645
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4813824
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813828
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR2467265
|
Sensitive
|
lineage3
|
None
|
SRR25827435
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4813881
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813872
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813891
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4813889
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813883
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813897
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3085345
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813911
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3082103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1200603
|
Sensitive
|
lineage7
|
None
|
SRR1723876
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6824347
|
RR-TB
|
lineage4.4.2
|
cn
|
SRR3105792
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR233363
|
Sensitive
|
lineage1.1.1
|
None
|
ERR1200618
|
Sensitive
|
lineage7
|
None
|
ERR2041785
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041738
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041734
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041791
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2041796
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041712
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR1723976
|
RR-TB
|
lineage4.4.2
|
cn
|
ERR4816959
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR233346
|
Sensitive
|
lineage7
|
None
|
ERR841400
|
Other
|
lineage4.8
|
None
|
ERR1034785
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR4019491
|
Other
|
La1.7.1
|
None
|
SRR3743189
|
Other
|
lineage4.2.1
|
None
|
ERR245675
|
Sensitive
|
lineage1.1.2
|
None
|
ERR2510599
|
MDR-TB
|
lineage4.8
|
None
|
SAMN02360591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR245795
|
Sensitive
|
lineage4.3.2.1;lineage3.1.1
|
None
|
ERR4818870
|
Sensitive
|
lineage3
|
None
|
ERR245790
|
Sensitive
|
|
None
|
ERR245824
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR245816
|
Sensitive
|
lineage4.1.2
|
None
|
ERR245819
|
Other
|
lineage3.1.1
|
None
|
ERR245817
|
Sensitive
|
lineage1.1.3.2
|
None
|
ERR245825
|
Sensitive
|
lineage1.1.3
|
None
|
ERR245823
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR5153605
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR757159
|
MDR-TB
|
lineage4.1.2.1.1
|
ar
|
ERR7910872
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SAMN02360613
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR7912726
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SAMN02360551
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR2516617
|
MDR-TB
|
lineage3
|
None
|
SAMN02360561
|
MDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360619
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02414953
|
MDR-TB
|
lineage4.7
|
se
|
SAMN02398696
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398693
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398713
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398704
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398712
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398711
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR1679636
|
MDR-TB
|
lineage4.6.2.2
|
ng
|
SAMN02398698
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR4827912
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653107
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2653146
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2653187
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2653211
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR502959
|
RR-TB
|
lineage4.4.2
|
None
|
ERR2653075
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4822360
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5817465
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798816
|
Pre-XDR-TB
|
lineage4.9;lineage4.1.1.3;lineage3;lineage2.2.1
|
in
|
ERR2179644
|
RR-TB
|
lineage4.4.2
|
cn
|
ERR4797898
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797975
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4827958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796449
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4796398
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798155
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4796509
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799862
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798428
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4798295
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4796613
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798274
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6356941
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830962
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799231
|
HR-TB
|
lineage2.2.1.1
|
in
|
ERR4810628
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR4797471
|
Pre-XDR-TB
|
lineage4.9
|
in
|
ERR4799352
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4830910
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797611
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799658
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799516
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799519
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800081
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799743
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799999
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800497
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3287845
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4813032
|
MDR-TB
|
lineage4.1.1.3
|
pe
|
ERR3287841
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR6785441
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6981998
|
Sensitive
|
lineage4.8.1;lineage4.4.1.1
|
None
|
ERR3287842
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
DRR130162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8351921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR036237
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR025841
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR036215
|
Other
|
lineage4.8
|
None
|
ERR036198
|
Other
|
lineage4.3.4.2
|
None
|
ERR036211
|
Other
|
lineage4.9;lineage4.3.4.2.1;lineage1.1.3.2
|
None
|
ERR046774
|
Other
|
La1.8.1
|
None
|
ERR046731
|
Sensitive
|
lineage4.1.1
|
None
|
ERR040092
|
Sensitive
|
lineage3.1.1
|
None
|
ERR046740
|
Sensitive
|
lineage4.1.1
|
None
|
ERR046750
|
Other
|
La1.8.1
|
None
|
ERR046805
|
Sensitive
|
lineage3
|
None
|
ERR046812
|
Sensitive
|
lineage3
|
None
|
ERR046810
|
Sensitive
|
lineage3.1.2
|
None
|
ERR046806
|
Sensitive
|
lineage3
|
None
|
ERR046807
|
Sensitive
|
lineage3
|
None
|
ERR046803
|
Sensitive
|
lineage3
|
None
|
ERR046813
|
Sensitive
|
lineage3
|
None
|
ERR046811
|
Sensitive
|
lineage3
|
None
|
ERR046816
|
Other
|
lineage3.1.2
|
None
|
ERR046809
|
Sensitive
|
lineage3
|
None
|
ERR046944
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR046815
|
Sensitive
|
lineage3.1.2
|
None
|
ERR046830
|
Sensitive
|
lineage3.1.2
|
None
|
ERR046827
|
Sensitive
|
lineage3
|
None
|
ERR046886
|
Sensitive
|
lineage1.2.2.1
|
None
|
ERR046899
|
Sensitive
|
lineage4.8
|
None
|
ERR046902
|
Sensitive
|
lineage4.1.1.3
|
None
|
ERR046828
|
Sensitive
|
lineage3
|
None
|
ERR046826
|
Sensitive
|
lineage3
|
None
|
ERR046829
|
Sensitive
|
lineage3
|
None
|
ERR046835
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR046896
|
Sensitive
|
lineage1.1.2
|
None
|
ERR10225494
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4819542
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR12118059
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10762235
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1367680
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR3273101
|
RR-TB
|
lineage4.5
|
None
|