Rv0682 - p.Lys88Met
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
3 RR-TB
41 HR-TB
123 MDR-TB
39 Pre-XDR-TB
6 XDR-TB
12 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1 | 26 |
| lineage4.2.2.2 | 18 |
| lineage2.2.1 | 35 |
| lineage4.3.3 | 22 |
| lineage4.4.1.2 | 5 |
| lineage1.2.2.2 | 7 |
| La1.3;lineage1.2.2.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.2.1.1 | 1 |
| lineage1.1.2 | 10 |
| lineage4 | 5 |
| lineage3.1.3 | 1 |
| lineage3 | 12 |
| lineage4.3.1 | 4 |
| lineage1.1.3.1 | 7 |
| lineage4.8 | 9 |
| lineage4.1.2.1 | 8 |
| lineage1.1.1.1 | 6 |
| lineage4.3.2 | 1 |
| lineage4.5 | 3 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage4.2.1;lineage4.3.3 | 1 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage5.1.5 | 7 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage4.2.2.1 | 2 |
| lineage4.3.3;lineage4.6.4 | 1 |
| lineage3.1.1 | 2 |
| lineage2.2.1;lineage4.4.1.2 | 1 |
| lineage4.4.1 | 1 |
| lineage5.1.1 | 1 |
| lineage3.1.1;lineage4.2.2.2 | 2 |
| lineage3;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| 1 | |
| lineage1.2.1.2 | 1 |
| lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 224 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29539665 | MDR-TB | lineage4.2.1 | None | ERR4596911 | MDR-TB | lineage4.2.2.2 | None | SRR12420693 | MDR-TB | lineage2.2.1 | None | SRR7070283 | MDR-TB | lineage4.2.2.2 | None | SRR29539395 | HR-TB | lineage4.2.1 | None | ERR3639802 | MDR-TB | lineage4.3.3 | None | SRR14802012 | MDR-TB | lineage4.2.1 | None | SRR29055675 | MDR-TB | lineage4.3.3 | None | ERR13439883 | HR-TB | lineage4.4.1.2 | None | SRR29772681 | MDR-TB | lineage2.2.1 | None | ERR3077954 | MDR-TB | lineage4.2.2.2 | None | ERR13266831 | Pre-XDR-TB | lineage2.2.1 | None | ERR3078000 | MDR-TB | lineage4.2.2.2 | None | ERR4553772 | MDR-TB | lineage1.2.2.2 | None | SRR25340859 | MDR-TB | La1.3;lineage1.2.2.2 | None | ERR4800158 | MDR-TB | lineage4.2.2.2 | None | SRR29056340 | MDR-TB | lineage4.3.3 | None | SRR29053293 | MDR-TB | lineage4.3.4.2 | None | SRR29055888 | MDR-TB | lineage4.3.3 | None | SRR6785182 | Other | lineage4.2.1.1 | None | SRR29017070 | MDR-TB | lineage1.1.2 | None | SRR29230911 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261174 | XDR-TB | lineage4.2.2.2 | None | ERR13266460 | Other | lineage1.2.2.2 | None | SRR23310985 | HR-TB | lineage4.2.1 | None | ERR11082948 | MDR-TB | lineage4 | None | ERR3335755 | Pre-XDR-TB | lineage3.1.3 | pk | ERR13284596 | MDR-TB | lineage1.1.2 | None | ERR4798983 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR29772553 | Pre-XDR-TB | lineage1.1.2 | None | SRR29017522 | MDR-TB | lineage3 | None | ERR4830672 | MDR-TB | lineage4.3.1 | dz | ERR11243582 | MDR-TB | lineage4.2.1 | None | SAMN02414928 | MDR-TB | lineage1.1.3.1 | se | SRR7652996 | MDR-TB | lineage4.2.1 | None | SRR1166137 | Pre-XDR-TB | lineage4.8 | ro | SRR6484911 | HR-TB | lineage4.2.1 | None | ERR4596936 | MDR-TB | lineage4.2.2.2 | None | SRR8651595 | MDR-TB | lineage2.2.1 | cn | ERR3287521 | MDR-TB | lineage4.3.3 | None | ERR751438 | MDR-TB | lineage4.1.2.1 | pe | ERR4828410 | HR-TB | lineage2.2.1 | None | ERR7911149 | MDR-TB | lineage1.1.1.1 | vn | ERR4832009 | HR-TB | lineage4.4.1.2 | vn | ERR4830619 | MDR-TB | lineage4.2.1 | tm | ERR4830722 | Pre-XDR-TB | lineage4.3.1 | dz | ERR11080891 | MDR-TB | lineage4.3.3 | None | ERR5866002 | MDR-TB | lineage4.1.2.1 | None | ERR772260 | MDR-TB | lineage4.3.2 | None | SRR16370461 | MDR-TB | lineage4.3.4.2 | None | ERR11080894 | HR-TB | lineage4.5 | None | SRR28498554 | MDR-TB | lineage4.2.1 | None | ERR3470647 | Other | lineage3 | None | ERR2510394 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969660 | MDR-TB | lineage2.2.1 | None | SRR2100064 | Other | lineage3 | None | ERR2514340 | HR-TB | lineage4.3.3 | gb | SRR6824586 | MDR-TB | lineage2.2.1 | cn | SRR14807558 | MDR-TB | lineage4.2.1 | None | ERR1034735 | MDR-TB | lineage4.3.3 | pe | SRR16088544 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR14802041 | Pre-XDR-TB | lineage4.2.1;lineage4.3.3 | None | SRR29017403 | MDR-TB | lineage1.2.2.2 | None | SRR28239704 | MDR-TB | lineage4.1.2.1 | None | ERR9029858 | MDR-TB | lineage4.3.3 | None | SRR1144834 | MDR-TB | lineage1.1.3.1 | None | SRR19428523 | HR-TB | lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | None | ERR5917747 | HR-TB | lineage4.2.1 | by | ERR2446184 | HR-TB | lineage1.1.1.1 | nl | ERR11043467 | MDR-TB | lineage4.2.1 | None | SRR19428504 | MDR-TB | lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | None | ERR3287686 | MDR-TB | lineage4.3.3 | None | ERR9030384 | MDR-TB | lineage1.1.2 | None | ERR9030519 | MDR-TB | lineage1.1.2 | None | SRR25340828 | HR-TB | La1.3;lineage1.2.2.2 | None | SRR10040322 | MDR-TB | lineage2.2.1 | None | SRR1723619 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3275322 | HR-TB | lineage1.1.1.1 | nl | SRR10525335 | MDR-TB | lineage4.8 | None | ERR552036 | XDR-TB | lineage4.3.3 | None | SRR16509481 | MDR-TB | lineage4.3.3 | None | ERR6879030 | MDR-TB | lineage4.3.3 | None | ERR4596941 | MDR-TB | lineage4.3.4.2.1 | None | SRR16058393 | RR-TB | lineage1.2.2.2 | None | ERR11798651 | MDR-TB | lineage4.2.1 | None | SRR29126632 | HR-TB | lineage4.6.2.2 | None | ERR4596908 | MDR-TB | lineage4.2.2.2 | None | SRR14801544 | HR-TB | lineage4.1.2.1 | None | ERR13285132 | MDR-TB | lineage4.2.1 | None | ERR11081477 | MDR-TB | lineage4.2.1 | None | SRR14802075 | MDR-TB | lineage4.2.1 | None | SRR29053361 | MDR-TB | lineage3 | None | SRR23938656 | Other | lineage2.2.1 | None | SRR21733095 | Other | lineage2.2.1 | None | ERR552551 | HR-TB | lineage2.2.1 | None | SRR28119789 | Pre-XDR-TB | lineage2.2.1 | None | ERR015612 | HR-TB | lineage2.2.1 | None | ERR1215464 | HR-TB | lineage5.1.5 | None | ERR13266520 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR552549 | HR-TB | lineage2.2.1 | None | SRR19428529 | MDR-TB | lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | None | SRR25827778 | MDR-TB | lineage2.2.1 | None | SRR3086367 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081389 | MDR-TB | lineage4.2.2.1 | None | ERR1035319 | MDR-TB | lineage4.3.3;lineage4.6.4 | br | ERR4553437 | MDR-TB | lineage1.1.2 | None | SRR29273759 | MDR-TB | lineage4.8 | None | ERR13290482 | MDR-TB | lineage1.1.3.1 | None | ERR13284224 | MDR-TB | lineage3.1.1 | None | ERR13439903 | HR-TB | lineage2.2.1;lineage4.4.1.2 | None | ERR4812187 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4799165 | Pre-XDR-TB | lineage3 | in | SRR9738489 | MDR-TB | lineage4.8 | None | SRR14801615 | MDR-TB | lineage4.2.1 | None | ERR11775914 | MDR-TB | lineage4.2.2.2 | None | SRR28646104 | MDR-TB | lineage4.8 | None | ERR4831988 | HR-TB | lineage4.4.1 | vn | ERR4830734 | MDR-TB | lineage4.3.1 | dz | ERR4830732 | MDR-TB | lineage4.3.1 | dz | ERR4832064 | HR-TB | lineage4.4.1.2 | vn | ERR3078007 | MDR-TB | lineage4.2.2.2 | None | ERR3170404 | MDR-TB | lineage5.1.1 | gh | ERR1215480 | MDR-TB | lineage5.1.5 | gh | ERR1334051 | HR-TB | lineage5.1.5 | gh | ERR502508 | Pre-XDR-TB | lineage5.1.5 | gh | ERR502509 | Pre-XDR-TB | lineage5.1.5 | gh | ERR702410 | HR-TB | lineage5.1.5 | gh | ERR702428 | HR-TB | lineage5.1.5 | gh | ERR2516208 | MDR-TB | lineage4.3.3 | be | SAMEA2534726 | HR-TB | lineage2.2.1 | th | SRR5341322 | Pre-XDR-TB | lineage3 | in | SRR6824379 | Pre-XDR-TB | lineage2.2.1 | cn | SRR18002883 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351421 | MDR-TB | lineage4.2.1 | None | SRR10380054 | HR-TB | lineage4.1.2.1 | None | SRR29273736 | XDR-TB | lineage4.8 | None | SRR1163293 | MDR-TB | lineage1.1.3.1 | None | SRR14801991 | MDR-TB | lineage4.2.1 | None | SRR5065268 | HR-TB | lineage4.5 | vn | SRR16370414 | MDR-TB | lineage1.1.1.1 | None | SRR5067455 | Other | lineage1.1.1.1 | vn | ERR3077960 | HR-TB | lineage4.2.2.2 | None | ERR4798843 | XDR-TB | lineage4.2.2.2 | in | ERR4800309 | XDR-TB | lineage4.2.2.2 | in | ERR9125268 | RR-TB | lineage1.2.2.2 | None | SRR1146286 | MDR-TB | lineage1.1.3.1 | None | ERR4831493 | Pre-XDR-TB | lineage3 | None | SRR21674628 | MDR-TB | lineage3 | None | SRR29056159 | MDR-TB | lineage4.3.3 | None | SRR1723776 | MDR-TB | lineage2.2.1 | cn | ERR3077998 | MDR-TB | lineage3.1.1;lineage4.2.2.2 | None | SRR12142419 | HR-TB | lineage2.2.1 | None | ERR13283981 | MDR-TB | lineage4 | None | SRR14807475 | MDR-TB | lineage4.2.1 | None | SRR7592387 | Pre-XDR-TB | lineage4.8 | None | ERR4596929 | MDR-TB | lineage3;lineage4.2.2.2 | None | ERR13283989 | MDR-TB | lineage4 | None | SRR12420365 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119556 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR11044503 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR22175219 | XDR-TB | lineage2.2.1;lineage4.2.2.2 | None | SRR29772522 | Pre-XDR-TB | lineage2.2.1 | None | ERR12117945 | MDR-TB | lineage4.3.3 | None | ERR11081075 | MDR-TB | lineage3.1.1 | None | SRR19392724 | MDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | None | SRR29055685 | MDR-TB | lineage4.3.3 | None | SRR29017605 | MDR-TB | lineage1.2.2.2 | None | ERR13284579 | MDR-TB | lineage4.2.2.1 | None | SRR5338521 | MDR-TB | lineage1.2.1.2.1 | None | ERR2843534 | HR-TB | lineage2.2.1 | None | SRR12420636 | MDR-TB | lineage4.5 | None | ERR551563 | Other | lineage3 | None | SRR5153719 | Pre-XDR-TB | lineage4.2.1 | None | ERR1035329 | Pre-XDR-TB | lineage4.3.3 | br | ERR13290483 | MDR-TB | lineage1.1.3.1 | None | ERR4797926 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4798893 | HR-TB | lineage3 | in | SRR26112448 | HR-TB | lineage4.3.3 | None | ERR4796412 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797791 | HR-TB | lineage1.1.2 | in | ERR8773958 | Other | lineage4.1 | None | SRR1163305 | MDR-TB | lineage1.1.3.1 | None | ERR4799628 | Pre-XDR-TB | lineage4.3.4.1 | in | SRR3085296 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070664 | HR-TB | lineage4.3.3 | None | ERR6358738 | Other | lineage4.9 | None | SRR6485171 | RR-TB | lineage4.8 | None | SRR11662163 | MDR-TB | lineage1.1.1 | None | SRR28394168 | MDR-TB | lineage4.3.3 | None | SRR28394005 | MDR-TB | lineage4.3.3 | None | SRR28351322 | Pre-XDR-TB | lineage3 | None | SRR28409425 | Other | lineage2.2.1 | None | ERR11043766 | MDR-TB | lineage4 | None | ERR2510607 | Pre-XDR-TB | lineage3 | None | SRR5486886 | Pre-XDR-TB | lineage4.8 | None | ERR553139 | MDR-TB | lineage2.2.1 | uz | ERR4821992 | MDR-TB | lineage1.1.2 | gb | SRR19428563 | Other | lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | None | SRR6257090 | HR-TB | lineage4.2.1 | None | ERR4872154 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR4553449 | MDR-TB | None | SRR5065206 | HR-TB | lineage4.4.1.2 | vn | ERR4553584 | MDR-TB | lineage1.2.2.2 | None | ERR11082614 | MDR-TB | lineage1.1.2 | None | ERR2517624 | HR-TB | lineage1.1.1.1 | nl | SRR12420467 | MDR-TB | lineage2.2.1 | None | SRR14801981 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR11043794 | MDR-TB | lineage4 | None | ERR4596921 | MDR-TB | lineage4.3.4.2.1 | None | ERR10225516 | MDR-TB | lineage1.1.2 | None | SRR14782793 | MDR-TB | lineage4.2.1 | None | SRR14782794 | MDR-TB | lineage4.2.1 | None | SRR14807644 | MDR-TB | lineage4.2.1 | None | ERR3077963 | MDR-TB | lineage3.1.1;lineage4.2.2.2 | None | SRR14801614 | MDR-TB | lineage4.2.1 | None | SRR21576712 | MDR-TB | lineage1.2.1.2 | None | ERR552550 | HR-TB | lineage2.2.1 | None | SRR29050951 | HR-TB | lineage2.2.1 | None | ERR13276151 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR18003008 | Pre-XDR-TB | lineage2.2.2 | None | ERR3077947 | MDR-TB | lineage4.2.2.2 | None | SRR18715198 | MDR-TB | lineage4.1.2.1 | None | ERR13439904 | HR-TB | lineage4.4.1.2 | None | SRR12420345 | MDR-TB | lineage2.2.1 | None |
|---|
