SRR1166137
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
ERR4812187
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR13284579
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR551563
|
Other
|
lineage3
|
None
|
SRR5153719
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR6824379
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4828410
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29017070
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR26112448
|
HR-TB
|
lineage4.3.3
|
None
|
ERR13266460
|
Other
|
lineage1.2.2.2
|
None
|
ERR4553437
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR1034735
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4796412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831988
|
HR-TB
|
lineage2.2.1;lineage4.4.1.2
|
vn
|
ERR1215480
|
MDR-TB
|
lineage5.1.5
|
gh
|
ERR10225516
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR13284596
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR11243582
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29273759
|
MDR-TB
|
lineage4.8
|
None
|
ERR13276151
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR7070664
|
HR-TB
|
lineage4.3.3
|
None
|
SRR6485171
|
RR-TB
|
lineage4.8
|
None
|
SRR7652996
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR1203070
|
MDR-TB
|
lineage5.1.5
|
gh
|
ERR13290482
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR9738489
|
MDR-TB
|
lineage4.8
|
None
|
SRR6824586
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR28646104
|
MDR-TB
|
lineage4.8
|
None
|
ERR11080891
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866002
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13261174
|
XDR-TB
|
lineage4.2.2.2
|
None
|
ERR3078007
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR751438
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR11080894
|
HR-TB
|
lineage4.5
|
None
|
SRR28498554
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3470647
|
Other
|
lineage3
|
None
|
SRR14807558
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28351421
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10380054
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR702410
|
HR-TB
|
lineage5.1.5
|
gh
|
SRR16088544
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR4553449
|
MDR-TB
|
|
None
|
ERR4553584
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR6358738
|
Other
|
lineage4.9
|
None
|
SRR29772522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082614
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR14801981
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR702428
|
HR-TB
|
lineage5.1.5
|
gh
|
SRR14807644
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11043467
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3077963
|
MDR-TB
|
lineage3.1.1;lineage4.2.2.2
|
None
|
ERR4831493
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR14801614
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3077998
|
MDR-TB
|
lineage3.1.1;lineage4.2.2.2
|
None
|
ERR5917747
|
HR-TB
|
lineage4.2.1
|
by
|
SRR5067455
|
Other
|
lineage1.1.1.1
|
vn
|
ERR4830672
|
MDR-TB
|
lineage4.3.1
|
dz
|
SRR10525335
|
MDR-TB
|
lineage4.8
|
None
|
ERR552036
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR16509481
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR6879030
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18003008
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4596941
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR16058393
|
RR-TB
|
lineage1.2.2.2
|
None
|
SRR29055888
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539665
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR13439904
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR502508
|
Pre-XDR-TB
|
lineage5.1.5
|
gh
|
SRR12420365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3275322
|
HR-TB
|
lineage1.1.1.1
|
nl
|
ERR9119556
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
ERR11798651
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14801544
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR22175219
|
XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR11081075
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR14802075
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21733095
|
Other
|
lineage2.2.1
|
None
|
ERR4798893
|
HR-TB
|
lineage3
|
in
|
SRR5338521
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR3078000
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4821992
|
MDR-TB
|
lineage1.1.2
|
gb
|
SRR25340859
|
MDR-TB
|
La1.3;lineage1.2.2.2
|
None
|
ERR3287521
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12420636
|
MDR-TB
|
lineage4.5
|
None
|
ERR7911149
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
ERR11081389
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR23310985
|
HR-TB
|
lineage4.2.1
|
None
|
ERR2510394
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830722
|
Pre-XDR-TB
|
lineage4.3.1
|
dz
|
SRR3085296
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662163
|
MDR-TB
|
lineage1.1.1
|
None
|
SRR29017522
|
MDR-TB
|
lineage3
|
None
|
ERR4799165
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR3170404
|
MDR-TB
|
lineage5.1.1
|
gh
|
SRR28394168
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539395
|
HR-TB
|
lineage4.2.1
|
None
|
SRR29126632
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR4596929
|
MDR-TB
|
lineage3;lineage4.2.2.2
|
None
|
ERR13284224
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR2516208
|
MDR-TB
|
lineage4.3.3
|
be
|
ERR9030384
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9030519
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5341322
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR5486886
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR19428563
|
Other
|
lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3
|
None
|
SRR1723776
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1163293
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR28239704
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR8651595
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1723619
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR12420467
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1144834
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR11043794
|
MDR-TB
|
lineage4
|
None
|
SRR29772553
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4798983
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR4800309
|
XDR-TB
|
lineage4.2.2.2
|
in
|
SRR1146286
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR1035329
|
Pre-XDR-TB
|
lineage4.3.3
|
br
|
SRR29056159
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10040322
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3335755
|
Pre-XDR-TB
|
lineage3.1.3
|
pk
|
ERR552550
|
HR-TB
|
lineage2.2.1
|
None
|
ERR502509
|
Pre-XDR-TB
|
lineage5.1.5
|
gh
|
ERR3077947
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR18715198
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR12420693
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070283
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR11044503
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR4596908
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR14802012
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR23938656
|
Other
|
lineage2.2.1
|
None
|
SRR19392724
|
MDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2
|
None
|
ERR552551
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3077954
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29055685
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR015612
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4553772
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4800158
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR1215464
|
HR-TB
|
lineage5.1.5
|
None
|
ERR2843534
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830732
|
MDR-TB
|
lineage4.3.1
|
dz
|
ERR552549
|
HR-TB
|
lineage2.2.1
|
None
|
SRR19428529
|
MDR-TB
|
lineage1.1.2;lineage3.1.1;lineage4.2.2.2
|
None
|
SRR25827778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3086367
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6785182
|
Other
|
lineage4.2.1.1
|
None
|
ERR553139
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR11082948
|
MDR-TB
|
lineage4
|
None
|
ERR8773958
|
Other
|
lineage4.1
|
None
|
SRR5065206
|
HR-TB
|
lineage4.4.1.2
|
vn
|
SRR1163305
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR2517624
|
HR-TB
|
lineage1.1.1.1
|
nl
|
SRR29230911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797791
|
HR-TB
|
lineage1.1.2
|
in
|
SRR29053361
|
MDR-TB
|
lineage3
|
None
|
SRR6484911
|
HR-TB
|
lineage4.2.1
|
None
|
ERR4596936
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR14801615
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28394005
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28351322
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28409425
|
Other
|
lineage2.2.1
|
None
|
ERR11775914
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4832009
|
HR-TB
|
lineage4.4.1.2
|
vn
|
ERR13439883
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR13439903
|
HR-TB
|
lineage2.2.1;lineage4.4.1.2
|
None
|
ERR11043766
|
MDR-TB
|
lineage4
|
None
|
SRR29055675
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR772260
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR16370461
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR2100064
|
Other
|
lineage3
|
None
|
ERR13283989
|
MDR-TB
|
lineage4
|
None
|
SRR20969660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002883
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257090
|
HR-TB
|
lineage4.2.1
|
None
|
ERR4872154
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
SRR29273736
|
XDR-TB
|
lineage4.8
|
None
|
ERR1334051
|
HR-TB
|
lineage5.1.5
|
gh
|
SRR29017605
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR14802041
|
Pre-XDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
SRR29017403
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR14801991
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR16370414
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR9029858
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4596921
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4799628
|
Pre-XDR-TB
|
lineage4.3.4.1
|
in
|
SRR19428523
|
HR-TB
|
lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3
|
None
|
ERR3077960
|
HR-TB
|
lineage4.2.2.2
|
None
|
ERR2446184
|
HR-TB
|
lineage1.1.1.1
|
nl
|
ERR4798843
|
XDR-TB
|
lineage4.2.2.2
|
in
|
SRR14782793
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14782794
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMN02414928
|
MDR-TB
|
lineage1.1.3.1
|
se
|
SRR29772681
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19428504
|
MDR-TB
|
lineage2.2.1;lineage3.1.1;lineage4.2.2.2
|
None
|
ERR3287686
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21674628
|
MDR-TB
|
lineage3
|
None
|
ERR9125268
|
RR-TB
|
lineage1.2.2.2
|
None
|
SRR25340828
|
HR-TB
|
La1.3;lineage1.2.2.2
|
None
|
ERR4830734
|
MDR-TB
|
lineage4.3.1
|
dz
|
SRR5065268
|
HR-TB
|
lineage4.5
|
vn
|
SRR14807475
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR12420345
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7592387
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4832064
|
HR-TB
|
lineage4.4.1.2
|
vn
|
ERR2514340
|
HR-TB
|
lineage4.3.3
|
gb
|
ERR4797926
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
ERR4596911
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR21576712
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR1035319
|
MDR-TB
|
lineage4.3.3;lineage4.6.4
|
br
|
ERR3639802
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12117945
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4830619
|
MDR-TB
|
lineage4.2.1
|
tm
|