Rv1484 - c.-100C>A


Drug resistance types
41 Sensitive 2 RR-TB 38 HR-TB 40 MDR-TB 28 Pre-XDR-TB 7 XDR-TB 4 Other
lineage Counts
lineage Count
lineage4.2.1.1 11
lineage4.1.2.1;lineage4.2;lineage4.9 4
lineage4.1.2.1 8
lineage4.1.4 2
lineage4.2.1 7
lineage4.2.1.1;lineage4.3.3 2
lineage2.2.1.1 4
lineage4.8 8
lineage4.1.2.1;lineage4.2.1;lineage4.9 18
lineage4.1.2.1;lineage4.2.1 21
lineage4.1.3 8
lineage4.1.2.1;lineage4.2 5
lineage3.1.2 3
lineage4.1.2;lineage4.2.1;lineage4.9 8
lineage2.2.1 33
lineage4.1.2;lineage4.2.1 1
lineage4.1.1.3;lineage4.1.2.1 1
lineage4.3.4.2.1 4
lineage4.1.1.3 1
lineage1.2.2.2 2
lineage4.3.1 1
lineage4.1.2.1;lineage4.9 1
lineage3 1
lineage1.1 1
lineage2.2.1;lineage4 1
lineage4.1.2;lineage4.2;lineage4.9 1
lineage1.1.3.1 1
lineage4.1;lineage4.2.1;lineage4.9 1
lineage4.3.3 1
spoligotype Counts
spoligotype Count
None 160
Geographic prevalence
Country level data for this variant is available for 22 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR11080875 MDR-TB lineage4.2.1.1 None
SRR1224855 HR-TB lineage4.1.2.1;lineage4.2;lineage4.9 None
SRR28394038 MDR-TB lineage4.1.2.1 None
SRR28393960 MDR-TB lineage4.1.2.1 None
SRR28393982 MDR-TB lineage4.1.2.1 None
SRR28393259 MDR-TB lineage4.1.2.1 None
SRR28393962 MDR-TB lineage4.1.2.1 None
SRR28393961 MDR-TB lineage4.1.2.1 None
SRR28393656 MDR-TB lineage4.1.4 None
ERR4820269 MDR-TB lineage4.2.1 gb
SRR23340060 MDR-TB lineage4.2.1.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR4822370 Pre-XDR-TB lineage2.2.1.1 None
ERR4813908 Sensitive lineage4.8 br
SRR13232729 MDR-TB lineage4.2.1.1;lineage4.3.3 None
SRR1219131 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR1233653 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1228489 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR998829 MDR-TB lineage4.1.3 None
SRR1222872 HR-TB lineage4.1.2.1;lineage4.2 None
ERR4797037 Pre-XDR-TB lineage3.1.2 None
SRR1214359 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
SRR1222355 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
ERR789235 XDR-TB lineage2.2.1 None
ERR4800480 Pre-XDR-TB lineage2.2.1 in
SRR1049976 MDR-TB lineage4.1.3 None
SRR23862123 Other lineage4.8 None
ERR8773609 MDR-TB lineage2.2.1 None
ERR4814072 Sensitive lineage4.8 None
SRR7657754 Pre-XDR-TB lineage2.2.1 None
SRR1219178 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1226239 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR15369027 Pre-XDR-TB lineage2.2.1 None
SRR7517690 XDR-TB lineage2.2.1 None
ERR978257 Pre-XDR-TB lineage2.2.1 None
SRR1215865 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
DRR130086 Pre-XDR-TB lineage2.2.1.1 None
SRR1228639 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
ERR789234 XDR-TB lineage2.2.1 None
SRR1233283 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR1232675 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
ERR4796672 Pre-XDR-TB lineage2.2.1 in
SRR1222231 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1221272 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1220107 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR1465811 HR-TB lineage4.1.2.1 co
SRR12420414 Sensitive lineage2.2.1 None
SRR1221638 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR1221524 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
SRR1232411 Sensitive lineage4.1.2;lineage4.2.1 None
ERR5917752 MDR-TB lineage4.2.1.1 by
SRR13180240 MDR-TB lineage2.2.1 None
ERR789236 XDR-TB lineage2.2.1 None
SRR17657952 Pre-XDR-TB lineage2.2.1 None
SRR21747027 Pre-XDR-TB lineage2.2.1 None
SRR1223327 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR28394219 MDR-TB lineage4.1.1.3;lineage4.1.2.1 None
SRR28351280 Pre-XDR-TB lineage2.2.1 None
SRR28393655 MDR-TB lineage4.1.2.1 None
SRR998849 MDR-TB lineage4.1.3 None
ERR789237 Pre-XDR-TB lineage2.2.1 None
SRR1216250 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
SRR1232598 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
ERR4798032 Pre-XDR-TB lineage3.1.2 in
ERR7363110 Sensitive lineage4.8 None
SRR1230902 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR4814028 Sensitive lineage4.8 br
SRR1223039 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR23340068 MDR-TB lineage4.2.1.1 None
SRR3724799 MDR-TB lineage4.3.4.2.1 cd
ERR978256 XDR-TB lineage2.2.1 None
ERR8665966 MDR-TB lineage4.2.1.1 None
SRR1222234 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1223101 HR-TB lineage4.1.2.1;lineage4.2 None
SRR1218875 HR-TB lineage4.1.2.1;lineage4.2;lineage4.9 None
SRR6832382 HR-TB lineage4.2.1 None
ERR4423738 MDR-TB lineage4.3.4.2.1 None
ERR4799756 MDR-TB lineage3.1.2 in
SRR21685367 MDR-TB lineage2.2.1 None
SRR14801698 HR-TB lineage4.2.1 None
SRR1215907 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR1222245 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
ERR8773611 MDR-TB lineage2.2.1 None
ERR8975904 Sensitive lineage4.1.1.3 None
DRR130147 RR-TB lineage2.2.1 None
SRR1221238 Sensitive lineage4.1.2.1;lineage4.2.1 None
SRR1232603 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR998852 MDR-TB lineage4.1.3 None
SRR16115883 Other lineage1.2.2.2 None
SRR1231414 Sensitive lineage4.1.2.1;lineage4.2.1 None
SRR12420513 RR-TB lineage2.2.1 None
SRR1223171 HR-TB lineage4.1.2.1;lineage4.2 None
SRR23340031 Pre-XDR-TB lineage4.2.1.1 None
SRR1215725 HR-TB lineage4.1.2.1;lineage4.2 None
ERR4813795 Sensitive lineage4.8 br
SRR1230845 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR4822349 Pre-XDR-TB lineage2.2.1.1 None
ERR3014618 MDR-TB lineage4.3.1 tn
SRR998850 MDR-TB lineage4.1.3 None
SRR13870409 Pre-XDR-TB lineage4.1.4 None
SRR1219270 Sensitive lineage4.1.2.1;lineage4.9 None
SRR1232755 Sensitive lineage4.1.2.1;lineage4.2;lineage4.9 None
SRR1226259 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR1231779 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
SRR23340066 MDR-TB lineage4.2.1.1 None
SRR23340030 Pre-XDR-TB lineage4.2.1.1 None
SRR998851 MDR-TB lineage4.1.3 None
ERR2707190 MDR-TB lineage4.3.4.2.1 cd
SRR1214735 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR998830 MDR-TB lineage4.1.3 None
ERR789238 XDR-TB lineage2.2.1 None
ERR8665965 MDR-TB lineage4.2.1.1 None
SRR1222345 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
ERR789239 Pre-XDR-TB lineage2.2.1 None
SRR1219259 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
ERR2516744 MDR-TB lineage4.2.1 gb
SRR1214598 Sensitive lineage4.1.2.1;lineage4.2.1 None
SRR7070621 MDR-TB lineage4.2.1 None
SRR12882611 HR-TB lineage3 None
SRR1215627 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR4813918 Sensitive lineage4.8 br
SRR1218484 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
SRR3724998 MDR-TB lineage4.1.3 ci
SRR7069531 MDR-TB lineage4.2.1 None
SRR22424759 Pre-XDR-TB lineage2.2.1 None
SRR18911992 Other lineage1.2.2.2 None
SRR17658004 Pre-XDR-TB lineage2.2.1 None
SRR1221335 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR3132175 Pre-XDR-TB lineage2.2.1 None
DRR130084 Pre-XDR-TB lineage2.2.1.1 None
SRR12420416 Other lineage2.2.1 None
SRR1215539 HR-TB lineage4.1.2.1;lineage4.2.1 None
ERR8774435 MDR-TB lineage4.3.4.2.1 None
SRR1231689 Sensitive lineage4.1.2.1;lineage4.2.1;lineage4.9 None
ERR2516811 MDR-TB lineage4.2.1.1 gb
SRR1221359 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1218199 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1218486 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR12420476 Pre-XDR-TB lineage2.2.1 None
SRR1218217 Sensitive lineage4.1.2;lineage4.2.1;lineage4.9 None
ERR4814108 Sensitive lineage4.8 br
ERR4797228 Pre-XDR-TB lineage2.2.1 in
ERR144609 Sensitive lineage2.2.1 ru
ERR768038 Sensitive lineage1.1 th
SRR12420406 Sensitive lineage2.2.1;lineage4 None
SRR1223082 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR1214558 Sensitive lineage4.1.2;lineage4.2;lineage4.9 None
ERR3132179 Pre-XDR-TB lineage2.2.1 None
SRR5341292 HR-TB lineage2.2.1 in
ERR11068896 Pre-XDR-TB lineage2.2.1 None
SRR1223380 Sensitive lineage4.1.2.1;lineage4.2.1 None
SRR1221213 HR-TB lineage4.1.2.1;lineage4.2;lineage4.9 None
ERR11067358 Sensitive lineage1.1.3.1 None
ERR11044238 Pre-XDR-TB lineage4.2.1 None
SRR1220983 Sensitive lineage4.1;lineage4.2.1;lineage4.9 None
SRR1218737 HR-TB lineage4.1.2.1;lineage4.2 None
SRR23340038 XDR-TB lineage4.2.1.1 None
SRR1220961 HR-TB lineage4.1.2.1;lineage4.2.1 None
SRR24256149 Pre-XDR-TB lineage4.3.3 None
SRR1222721 HR-TB lineage4.1.2.1;lineage4.2.1;lineage4.9 None