Rv1484 - c.-796C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
2 RR-TB
10 HR-TB
65 MDR-TB
58 Pre-XDR-TB
7 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1 | 62 |
| lineage3.1.2;lineage4.3.3 | 1 |
| lineage1.2.2.2 | 14 |
| lineage4.3.3 | 10 |
| lineage3.1.1 | 1 |
| lineage1.1.3 | 9 |
| lineage3 | 10 |
| lineage2.2.2 | 7 |
| lineage1.2.1.2.1 | 5 |
| lineage2.2.1.1 | 7 |
| lineage3.1.2 | 1 |
| lineage4.9 | 8 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.5 | 2 |
| lineage4.6.2.2 | 2 |
| lineage2.2.1.1;lineage3 | 2 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.1 | 1 |
| lineage3.1.2;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage1.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.4 | 1 |
| lineage6.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 156 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR234566 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR7517678 | MDR-TB | lineage4.4.1.1 | cd | SRR6257052 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827341 | Pre-XDR-TB | lineage3.1.2;lineage4.3.3 | None | SRR16088326 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831404 | XDR-TB | lineage2.2.1 | de | SRR1173683 | HR-TB | lineage1.2.2.2 | None | ERR11043511 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050135 | Pre-XDR-TB | lineage2.2.1 | None | SRR11348204 | HR-TB | lineage1.2.2.2 | None | SRR1048840 | MDR-TB | lineage2.2.1 | None | SRR1003101 | MDR-TB | lineage2.2.1 | None | ERR278533 | MDR-TB | lineage1.2.2.2 | None | ERR4276867 | XDR-TB | lineage2.2.1 | None | SRR22424799 | MDR-TB | lineage4.3.3 | None | ERR2245421 | MDR-TB | lineage3.1.1 | no | SRR20632796 | MDR-TB | lineage2.2.1 | None | ERR12916911 | Pre-XDR-TB | lineage2.2.1 | None | ERR015610 | MDR-TB | lineage2.2.1 | None | SRR1013542 | MDR-TB | lineage2.2.1 | None | ERR552260_ERR552259 | MDR-TB | lineage4.3.3 | None | SRR1048841 | MDR-TB | lineage2.2.1 | None | ERR552260 | MDR-TB | lineage4.3.3 | None | SRR18213767 | Sensitive | lineage1.1.3 | None | ERR11082245 | MDR-TB | lineage3 | None | ERR11083136 | MDR-TB | lineage2.2.2 | None | ERR4800117 | Pre-XDR-TB | lineage3 | None | SRR22175266 | MDR-TB | lineage4.3.3 | None | SRR21690123 | HR-TB | lineage1.2.1.2.1 | None | ERR13276181 | XDR-TB | lineage2.2.1 | None | SRR10305995 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29017704 | MDR-TB | lineage1.1.3 | None | SRR3675523 | MDR-TB | lineage2.2.1 | None | ERR13290243 | MDR-TB | lineage2.2.1 | None | SRR14179705 | Pre-XDR-TB | lineage3 | None | ERR11043495 | MDR-TB | lineage2.2.2 | None | SRR24498059 | XDR-TB | lineage3 | None | ERR4799655 | Pre-XDR-TB | lineage2.2.1 | in | ERR11067302 | HR-TB | lineage1.2.1.2.1 | None | ERR13266753 | Pre-XDR-TB | lineage3.1.2 | None | SRR1165539 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231660 | MDR-TB | lineage4.9 | None | ERR13290877 | HR-TB | lineage4.9 | None | SRR29231855 | MDR-TB | lineage4.9 | None | SAMN02360550 | MDR-TB | lineage2.2.1 | kr | ERR278605 | Sensitive | lineage1.1.3 | None | SRR28046349 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR28351567 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516463 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR6824693 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6824696 | Pre-XDR-TB | lineage2.2.1.1 | cn | ERR13267081 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733271 | Sensitive | lineage4.5 | None | ERR13290236 | MDR-TB | lineage2.2.1 | None | ERR4423626 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR386964 | Sensitive | lineage1.1.3 | None | ERR4423714 | MDR-TB | lineage4.4.1.1 | None | ERR4797311 | XDR-TB | lineage2.2.1.1;lineage3 | in | ERR117667 | MDR-TB | lineage1.2.2.2 | None | ERR11081550 | MDR-TB | lineage2.2.2 | None | SRR7796668 | Pre-XDR-TB | lineage2.2.2 | None | SRR21276994 | Other | lineage2.2.1 | None | ERR8774243 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR1723706 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR1723707 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR16088557 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276383 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276868 | XDR-TB | lineage2.2.1 | None | ERR13273029 | MDR-TB | lineage3 | None | ERR13290246 | MDR-TB | lineage2.2.1 | None | ERR13284624 | MDR-TB | lineage2.2.2 | None | SRR29538985 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285485 | HR-TB | lineage1.2.1.2.1 | None | SRR1003108 | MDR-TB | lineage2.2.1 | None | SRR6797762 | Sensitive | lineage1.1.3 | None | SRR29539757 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013541 | MDR-TB | lineage2.2.1 | None | SRR6785511 | MDR-TB | lineage2.2.1 | None | ERR027447 | MDR-TB | lineage2.2.1 | ru | SRR29055888 | MDR-TB | lineage4.3.3 | None | ERR6879050 | MDR-TB | lineage4.1.2.1 | None | SRR6797387 | Sensitive | lineage1.1.3 | None | ERR13262037 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813382 | HR-TB | lineage4.9 | None | ERR2706947 | MDR-TB | lineage4.9 | cd | SAMN02360625 | MDR-TB | lineage2.2.1 | kr | SAMN02360628 | MDR-TB | lineage2.2.1 | kr | ERR2707045 | MDR-TB | lineage4.9 | cd | ERR2707047 | MDR-TB | lineage4.9 | cd | SAMN02414993 | Pre-XDR-TB | lineage2.2.1 | se | SRR29231797 | MDR-TB | lineage4.9 | None | SRR671789 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6153076 | HR-TB | lineage2.2.1;lineage4 | ca | SRR1003107 | MDR-TB | lineage2.2.1 | None | ERR4800161 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR2099974 | MDR-TB | lineage1.2.2.2 | None | SRR2100920 | MDR-TB | lineage1.2.2.2 | None | SRR2100976 | Sensitive | lineage1.1.3 | None | ERR067696 | MDR-TB | lineage2.2.1 | ru | ERR137282 | MDR-TB | lineage2.2.1 | ru | ERR234668 | MDR-TB | lineage2.2.1 | ru | ERR2677418 | Pre-XDR-TB | lineage2.2.1 | de | ERR2513880 | Pre-XDR-TB | lineage2.2.1 | gb | SRR7796667 | Pre-XDR-TB | lineage2.2.2 | None | SRR20139567 | RR-TB | lineage1.2.1.2.1 | None | SRR11348193 | MDR-TB | lineage1.2.2.2 | None | ERR1034802 | MDR-TB | lineage4.1.2.1 | pe | SRR6257011 | Pre-XDR-TB | lineage2.2.1 | ru | SRR16087942 | Pre-XDR-TB | lineage2.2.1 | None | SRR29440868 | Sensitive | lineage2.1 | None | ERR2677467 | Pre-XDR-TB | lineage2.2.1 | de | SRR25827517 | Pre-XDR-TB | lineage3.1.2;lineage4.2.2.2;lineage4.3.3 | None | ERR11067326 | Sensitive | lineage4.5 | None | DRR261051 | Sensitive | lineage1.1.1 | None | ERR11069124 | Pre-XDR-TB | lineage2.2.1 | None | SRR8758892 | MDR-TB | lineage2.2.2 | None | SRR18593225 | Pre-XDR-TB | lineage3 | None | ERR4553760 | MDR-TB | lineage1.1.3 | None | SRR13243567 | XDR-TB | lineage2.2.1 | None | SRR28393623 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11138647 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715279 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162701 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262183 | MDR-TB | lineage4.3.3 | None | SRR1166708 | Pre-XDR-TB | lineage2.2.1 | None | SRR6797329 | Sensitive | lineage1.1.3 | None | ERR11049496 | Other | lineage1.1.2 | None | SRR10305994 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4800106 | MDR-TB | lineage4.4 | None | ERR10680012 | MDR-TB | lineage6.3.1 | None | SRR1165582 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043690 | Pre-XDR-TB | lineage2.2.1 | None | ERR386892 | MDR-TB | lineage1.2.2.2 | None | ERR270685 | MDR-TB | lineage1.2.2.2 | None | ERR13276259 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797018 | MDR-TB | lineage4.3.3 | in | ERR4797110 | Pre-XDR-TB | lineage3 | in | SRR18715471 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772612 | RR-TB | lineage1.2.2.2 | None | SRR671812 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02599110 | HR-TB | lineage1.2.2.2 | in | SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn | SRR671863 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1172991 | HR-TB | lineage1.2.2.2 | None | ERR270664 | MDR-TB | lineage1.2.2.2 | None | SRR6397957 | MDR-TB | lineage1.2.1.2.1 | ca | SRR25827635 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | ERR2653145 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830922 | Pre-XDR-TB | lineage3 | np | SAMEA2534521 | MDR-TB | lineage4.3.3 | None | SRR2100231 | MDR-TB | lineage1.2.2.2 | None | ERR1193875 | MDR-TB | lineage4.3.3 | sl | SRR3675262 | MDR-TB | lineage2.2.1 | gb | SRR3675289 | MDR-TB | lineage2.2.1 | gb | ERR4816817 | Other | lineage3 | gb | SRR5341363 | Pre-XDR-TB | lineage3 | in |
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