TB-Profiler result

Run: ERR4813382
Summary

Run ID: ERR4813382

Sample name:

Date: 01-04-2023 12:43:06

Number of reads: 3313157

Percentage reads mapped: 99.98

Strain: lineage4.9

Drug-resistance: HR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
ahpC 2726139 c.-54C>T upstream_gene_variant 1.0 isoniazid
ahpC 2726154 c.-39C>T upstream_gene_variant 1.0 isoniazid
katG 2117451 c.-11139_*36437del transcript_ablation 1.0 isoniazid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
inhA 1673406 c.-796C>T upstream_gene_variant 1.0