Rv2428 - c.-54C>T


Drug resistance types
0 Sensitive 0 RR-TB 36 HR-TB 126 MDR-TB 44 Pre-XDR-TB 1 XDR-TB 0 Other
lineage Counts
lineage Count
lineage4 8
lineage4.4.2 3
lineage2.2.1 54
lineage2.2.1.1 4
lineage4.3.4.2 3
lineage4.6.1.2 7
lineage4.3.4.2.1 9
lineage2.2.2 9
lineage4.9 4
lineage4.1.2.1 22
lineage4.1.1 3
lineage4.8 21
lineage4.7 3
lineage4.6.2.2 2
lineage4.5 18
lineage4.3.3 5
lineage4.3.2.1 1
lineage2.2.1;lineage4.8 1
lineage2.2.1;lineage4.5 1
lineage6 1
lineage5.3 1
lineage5 2
lineage4.1.1.3 4
lineage6.3.3 1
lineage4.3.4.1 4
lineage4.1.1.1 2
lineage5.1.1 1
lineage4.2.2.1;lineage5 1
lineage4.4.1.1 1
lineage4.6.1.1 1
lineage1.2.1.2.1 2
lineage4.1.2.1;lineage4.3.4 1
lineage4.5;lineage4.8 1
lineage4.1.2 1
lineage1.2.2.2 1
lineage2.1 1
lineage4.1.3 2
lineage4.2.2.2 1
spoligotype Counts
spoligotype Count
None 207
Geographic prevalence
Country level data for this variant is available for 58 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4829697 Pre-XDR-TB lineage4 None
ERR718464 MDR-TB lineage4.4.2 th
SRR1723757 MDR-TB lineage2.2.1 cn
ERR3273126 MDR-TB lineage2.2.1.1 None
SRR16115013 HR-TB lineage4.3.4.2 None
ERR4811286 MDR-TB lineage2.2.1 cn
SRR1140717 MDR-TB lineage4.6.1.2 None
ERR1034816 MDR-TB lineage4.3.4.2.1 pt
SRR1049047 Pre-XDR-TB lineage2.2.2 None
ERR2497887 MDR-TB lineage4.9 None
ERR11082088 MDR-TB lineage4.1.2.1 None
ERR2184208 HR-TB lineage4.1.1 pe
ERR4827605 HR-TB lineage4.8 None
ERR552741_ERR552740 MDR-TB lineage2.2.1 None
ERR2706939 MDR-TB lineage4.7 cd
ERR4829160 MDR-TB lineage4.6.2.2 ng
SRR1723662 MDR-TB lineage2.2.1 cn
ERR4810628 MDR-TB lineage4.4.2 cn
SRR1723460 MDR-TB lineage2.2.1 cn
SRR1163388 MDR-TB lineage4.3.4.2.1 None
ERR1465842 MDR-TB lineage4.8 None
ERR4800303 Pre-XDR-TB lineage4.1.2.1 in
ERR8774333 MDR-TB lineage4.6.1.2 None
ERR551131 MDR-TB lineage4.8 None
ERR11488978 MDR-TB lineage4.3.4.2.1 None
ERR4797163 Pre-XDR-TB lineage2.2.1 in
SRR13583390 HR-TB lineage4.1.2.1 None
SRR15315941 Pre-XDR-TB lineage2.2.1 None
SRR24827305 HR-TB lineage2.2.1 None
ERR4829714 HR-TB lineage4.5 it
ERR2041751 MDR-TB lineage4.1.2.1 rs
SRR1723865 Pre-XDR-TB lineage2.2.1 None
ERR718244 HR-TB lineage2.2.1 th
SRR25515066 Pre-XDR-TB lineage2.2.1 None
ERR552443_ERR552442 MDR-TB lineage4.8 None
ERR3148038 Pre-XDR-TB lineage4.9 None
ERR4822377 Pre-XDR-TB lineage2.2.1 kg
ERR2099785 MDR-TB lineage4.1.2.1 es
SRR12420581 MDR-TB lineage2.2.1 None
SRR25206876 MDR-TB lineage2.2.1 None
SAMEA104221066 MDR-TB lineage4.1.2.1 es
ERR10680194 MDR-TB lineage4.8 None
ERR8774332 MDR-TB lineage4.6.1.2 None
ERR2791531 HR-TB lineage4.1.2.1 None
ERR2884681 MDR-TB lineage4.1.2.1 None
SRR20970063 MDR-TB lineage2.2.1 None
ERR5865896 MDR-TB lineage4.3.3 None
ERR4809261 MDR-TB lineage4.3.2.1 za
ERR4827606 MDR-TB lineage2.2.1;lineage4.8 None
SRR6824668 MDR-TB lineage2.2.1;lineage4.5 cn
ERR4827859 HR-TB lineage4.8 None
ERR551131_ERR551130 MDR-TB lineage4.8 None
ERR9030268 MDR-TB lineage4.8 None
SRR12420693 MDR-TB lineage2.2.1 None
ERR4813849 Pre-XDR-TB lineage4.7 None
ERR11081547 MDR-TB lineage4.1.2.1 None
ERR4423680 MDR-TB lineage4.6.1.2 None
ERR11044138 Pre-XDR-TB lineage4.5 None
ERR2516401 MDR-TB lineage4.7 nl
SRR3105738 HR-TB lineage2.2.1 None
ERR3148192 MDR-TB lineage4.3.3 mx
SAMN02380998 MDR-TB lineage4.6.1.2 ug
SRR21576735 MDR-TB lineage2.2.1 None
ERR10680176 MDR-TB lineage4.1.2.1 None
ERR4813382 HR-TB lineage4.9 None
SRR16370591 Pre-XDR-TB lineage4.5 None
ERR3806631 MDR-TB lineage6 None
ERR2791541 HR-TB lineage4.1.2.1 None
SRR19315458 Pre-XDR-TB lineage4.5 None
ERR439983 HR-TB lineage5.3 None
SRR21576614 MDR-TB lineage4.5 None
SRR1062888 MDR-TB lineage4.6.1.2 None
ERR4872200 MDR-TB lineage5 None
SRR6824522 MDR-TB lineage2.2.2 cn
SRR19276613 HR-TB lineage2.2.1 None
ERR4798914 Pre-XDR-TB lineage4.1.2.1 in
ERR2179676 MDR-TB lineage4.5 cn
SRR15316372 Pre-XDR-TB lineage2.2.1 None
SRR25207072 MDR-TB lineage2.2.1 None
ERR10748486 MDR-TB lineage4.1.1.3 None
ERR551070 HR-TB lineage6.3.3 None
ERR4798912 Pre-XDR-TB lineage4.1.2.1 in
ERR4800208 HR-TB lineage4.1.1.3 in
SRR10315692 MDR-TB lineage2.2.1 None
SRR671836 HR-TB lineage2.2.1 cn
SRR1163233 MDR-TB lineage4.3.4.2.1 None
SRR7131022 HR-TB lineage2.2.1 None
SRR27069414 MDR-TB lineage4.5 None
SRR28393548 MDR-TB lineage4 None
SRR28393388 MDR-TB lineage4.3.4.1 None
ERR4800199 MDR-TB lineage4.8 in
ERR279635 Pre-XDR-TB lineage2.2.1.1 None
SRR18002928 MDR-TB lineage2.2.1 None
ERR3287588 HR-TB lineage4.3.4.2 None
SRR13583445 HR-TB lineage4.1.1.1 None
ERR2516523 MDR-TB lineage4.1.1 pe
SAMN02414856 MDR-TB lineage4.3.4.2.1 se
SRR9971141 MDR-TB lineage2.2.1 None
ERR1035362 MDR-TB lineage4.1.2.1 br
ERR3335771 Pre-XDR-TB lineage4.5 pk
SRR25515784 HR-TB lineage4.5 None
SRR18495628 HR-TB lineage4.5 None
SAMN03246584 Pre-XDR-TB lineage2.2.1 cn
ERR4423681 MDR-TB lineage4.6.1.2 None
ERR5897112 Pre-XDR-TB lineage4.5 None
SRR21276920 Pre-XDR-TB lineage2.2.1 None
SAMN02360604 Pre-XDR-TB lineage2.2.2 kr
DRR130059 XDR-TB lineage4.5 None
SRR18910994 HR-TB lineage4.3.4.2 None
SRR21676429 HR-TB lineage2.2.1 None
ERR439932 MDR-TB lineage5.1.1 None
ERR6544658 HR-TB lineage4.1.1.1 None
ERR11043505 MDR-TB lineage4.2.2.1;lineage5 None
SRR25207247 MDR-TB lineage2.2.2 None
ERR4828844 Pre-XDR-TB lineage4 None
ERR2099789 MDR-TB lineage4.1.2.1 es
ERR552442 MDR-TB lineage4.8 None
ERR10680057 MDR-TB lineage4.4.1.1 None
ERR126642 HR-TB lineage4.1.1.3 mw
ERR5865895 MDR-TB lineage4.3.3 None
ERR11044144 Pre-XDR-TB lineage4.5 None
ERR9121553 MDR-TB lineage4.1.2.1 None
ERR495166 Pre-XDR-TB lineage2.2.1.1 None
ERR5897104 Pre-XDR-TB lineage4.5 None
SRR25389515 MDR-TB lineage2.2.1 None
SAMEA2534862 MDR-TB lineage2.2.1 uz
ERR4813962 Pre-XDR-TB lineage4.1.2.1 br
ERR4829985 MDR-TB lineage4.6.2.2 None
SRR10808440 HR-TB lineage4.1.1 None
ERR551231 MDR-TB lineage4.3.4.2.1 sz
ERR1023406 HR-TB lineage2.2.1 None
ERR5897118 Pre-XDR-TB lineage4.5 None
ERR1465967 MDR-TB lineage4.8 None
SRR15315828 MDR-TB lineage2.2.1 None
ERR8975535 MDR-TB lineage4.8 None
SAMEA4041329 MDR-TB lineage4.8 None
ERR4829761 Pre-XDR-TB lineage4 None
DRR130092 MDR-TB lineage2.2.1 None
ERR3078008 MDR-TB lineage4.6.1.1 None
ERR11081292 MDR-TB lineage1.2.1.2.1 None
SRR25515411 Pre-XDR-TB lineage2.2.1 None
ERR2099784 MDR-TB lineage4.1.2.1 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR1167084 MDR-TB lineage4.3.4.2.1 None
ERR11488387 MDR-TB lineage2.2.1 None
DRR130193 Pre-XDR-TB lineage4.9 None
SRR9971358 MDR-TB lineage2.2.1 None
ERR4819109 Pre-XDR-TB lineage4 gb
SRR1165426 MDR-TB lineage4.3.4.2.1 None
ERR4813822 Pre-XDR-TB lineage4.1.2.1;lineage4.3.4 None
ERR4830157 HR-TB lineage4.5;lineage4.8 None
ERR11043607 MDR-TB lineage4 None
SRR26558641 MDR-TB lineage4.1.2 None
SRR24256011 HR-TB lineage4.8 None
ERR11465075 MDR-TB lineage1.2.2.2 None
ERR5865894 MDR-TB lineage4.3.3 None
ERR1465842_ERR1465967 MDR-TB lineage4.8 None
SRR6824380 MDR-TB lineage2.2.1 cn
SRR15315827 MDR-TB lineage2.2.1 None
SRR11828966 HR-TB lineage2.1 None
SRR1723437 MDR-TB lineage2.2.2 cn
ERR4810965 MDR-TB lineage2.2.2 cn
ERR11488471 MDR-TB lineage4.3.4.1 None
SRR1013651 Pre-XDR-TB lineage2.2.2 None
ERR4827864 HR-TB lineage4.8 None
SRR6930919 MDR-TB lineage1.2.1.2.1 None
SRR6824294 MDR-TB lineage2.2.1 cn
SRR28393374 MDR-TB lineage4.1.2.1 None
ERR1633939 Pre-XDR-TB lineage2.2.1.1 za
ERR4811358 MDR-TB lineage2.2.1 cn
ERR4820895 HR-TB lineage4.3.4.2.1 gb
SRR6824481 Pre-XDR-TB lineage2.2.1 cn
ERR2707144 MDR-TB lineage4.8 cd
SRR10040427 Pre-XDR-TB lineage4.5 None
SRR15723128 HR-TB lineage2.2.1 None
SRR21277573 MDR-TB lineage2.2.1 None
SAMEA2534652 MDR-TB lineage4.8 uz
ERR502932 MDR-TB lineage2.2.1 None
SRR671826 Pre-XDR-TB lineage2.2.1 cn
ERR4872136 MDR-TB lineage4.1.3 None
SRR1013650 Pre-XDR-TB lineage2.2.2 None
ERR9806839 MDR-TB lineage2.2.1 None
ERR11082342 MDR-TB lineage4.2.2.2 None
ERR2677415 MDR-TB lineage4 de
ERR4828953 Pre-XDR-TB lineage4 None
SRR20970054 MDR-TB lineage2.2.1 None
SRR22251155 MDR-TB lineage4.5 None
ERR4811572 MDR-TB lineage2.2.1 cn
SRR20969990 HR-TB lineage4.5 None
ERR552443 MDR-TB lineage4.8 None
ERR10610104 MDR-TB lineage2.2.1 None
SRR13583433 MDR-TB lineage4.3.3 None
SAMEA2533723 MDR-TB lineage4.8 uz
ERR4872137 MDR-TB lineage4.1.3 None
ERR11488888 Pre-XDR-TB lineage4.3.4.1 None
ERR4800424 Pre-XDR-TB lineage4.1.2.1 in
ERR9119598 MDR-TB lineage5 None
SRR25207107 MDR-TB lineage4.4.2 None
ERR11488879 Pre-XDR-TB lineage4.3.4.1 None
SRR1049046 Pre-XDR-TB lineage2.2.2 None
ERR2510825 HR-TB lineage2.2.1 it
ERR2884681_ERR2099784 MDR-TB lineage4.1.2.1 None
SRR25207328 MDR-TB lineage2.2.1 None
ERR551130 MDR-TB lineage4.8 None
SRR18665477 MDR-TB lineage4.1.2.1 None
ERR4830503 MDR-TB lineage2.2.1 None
ERR2653069 MDR-TB lineage4.1.1.3 None