Rv2428 - c.-54C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
47 HR-TB
152 MDR-TB
55 Pre-XDR-TB
2 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.5 | 28 |
| lineage4.8 | 24 |
| lineage4.1.2 | 3 |
| lineage2.2.1 | 60 |
| lineage4 | 10 |
| lineage4.1.2.1 | 28 |
| lineage5 | 2 |
| lineage4.9 | 8 |
| lineage2.2.2 | 11 |
| lineage2.2.1.1 | 5 |
| lineage4.6.2.2 | 2 |
| lineage4.1.1 | 3 |
| lineage4.3.4.2.1 | 9 |
| lineage4.5;lineage4.8 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.3.4.1 | 4 |
| lineage1.2.2.2 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.1.1 | 3 |
| lineage4.3.3 | 6 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.2.2.1;lineage5 | 2 |
| lineage4.6.1.2 | 9 |
| lineage1.1.2 | 2 |
| lineage4.2.2.2 | 2 |
| lineage1.2.1.2.1 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.7 | 3 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage5.3 | 1 |
| lineage4.4.2 | 3 |
| lineage4.3.4.2 | 4 |
| lineage3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage5.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage6 | 1 |
| lineage6.3.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.3.4 | 1 |
| lineage1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 256 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16370591 | Pre-XDR-TB | lineage4.5 | None | ERR4827604 | HR-TB | lineage4.8 | None | SRR26558641 | MDR-TB | lineage4.1.2 | None | ERR552741_ERR552740 | MDR-TB | lineage2.2.1 | None | SRR19315458 | Pre-XDR-TB | lineage4.5 | None | ERR15686458 | Pre-XDR-TB | lineage4.5 | None | ERR11043607 | MDR-TB | lineage4 | None | ERR551131 | MDR-TB | lineage4.8 | None | ERR3335771 | Pre-XDR-TB | lineage4.5 | pk | ERR1465842_ERR1465967 | MDR-TB | lineage4.8 | None | ERR4798914 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4872200 | MDR-TB | lineage5 | None | ERR2791531 | HR-TB | lineage4.1.2.1 | None | SRR29055660 | HR-TB | lineage2.2.1 | None | ERR4800424 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR13260133 | MDR-TB | lineage4.1.2 | None | SRR15316305 | MDR-TB | lineage2.2.1 | None | ERR11082088 | MDR-TB | lineage4.1.2.1 | None | ERR13284212 | MDR-TB | lineage4.9 | None | SAMN02360604 | Pre-XDR-TB | lineage2.2.2 | kr | ERR1035362 | MDR-TB | lineage4.1.2.1 | br | ERR13195058 | MDR-TB | lineage2.2.2 | None | ERR1633939 | Pre-XDR-TB | lineage2.2.1.1 | za | SRR671826 | Pre-XDR-TB | lineage2.2.1 | cn | SRR9971358 | MDR-TB | lineage2.2.1 | None | ERR4811358 | MDR-TB | lineage2.2.1 | cn | ERR4829160 | MDR-TB | lineage4.6.2.2 | ng | ERR4829714 | HR-TB | lineage4.5 | it | ERR4828844 | Pre-XDR-TB | lineage4 | None | ERR4829761 | Pre-XDR-TB | lineage4 | None | ERR2677415 | MDR-TB | lineage4 | de | ERR2516523 | MDR-TB | lineage4.1.1 | pe | ERR2510825 | HR-TB | lineage2.2.1 | it | ERR495166 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29050680 | HR-TB | lineage4.1.2 | None | ERR1034816 | MDR-TB | lineage4.3.4.2.1 | pt | SRR1167084 | MDR-TB | lineage4.3.4.2.1 | None | SRR15315827 | MDR-TB | lineage2.2.1 | None | ERR13290975 | MDR-TB | lineage2.2.2 | None | ERR4822377 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4830157 | HR-TB | lineage4.5;lineage4.8 | None | SRR11828966 | HR-TB | lineage2.1 | None | ERR552442 | MDR-TB | lineage4.8 | None | SRR15723128 | HR-TB | lineage2.2.1 | None | ERR126642 | HR-TB | lineage4.1.1.3 | mw | ERR11044144 | Pre-XDR-TB | lineage4.5 | None | SRR28393388 | MDR-TB | lineage4.3.4.1 | None | ERR11465075 | MDR-TB | lineage1.2.2.2 | None | ERR11044138 | Pre-XDR-TB | lineage4.5 | None | SRR25207328 | MDR-TB | lineage2.2.1 | None | ERR13276203 | Pre-XDR-TB | lineage4.5 | None | SRR25389515 | MDR-TB | lineage2.2.1 | None | SRR25207024 | MDR-TB | lineage4.5 | None | SRR1723437 | MDR-TB | lineage2.2.2 | cn | ERR4872137 | MDR-TB | lineage4.1.3 | None | SRR1723662 | MDR-TB | lineage2.2.1 | cn | ERR6544658 | HR-TB | lineage4.1.1.1 | None | ERR5865895 | MDR-TB | lineage4.3.3 | None | ERR4827606 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR29081652 | MDR-TB | lineage4 | None | ERR9030268 | MDR-TB | lineage4.8 | None | ERR4829697 | Pre-XDR-TB | lineage4 | None | DRR130059 | XDR-TB | lineage4.5 | None | SRR1049046 | Pre-XDR-TB | lineage2.2.2 | None | SRR28859602 | HR-TB | lineage4.1.2.1 | None | ERR13281466 | MDR-TB | lineage4.2.2.1;lineage5 | None | SRR12420693 | MDR-TB | lineage2.2.1 | None | SRR1140717 | MDR-TB | lineage4.6.1.2 | None | ERR3273126 | MDR-TB | lineage2.2.1.1 | None | SRR15316372 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772602 | Pre-XDR-TB | lineage1.1.2 | None | SRR1013651 | Pre-XDR-TB | lineage2.2.2 | None | ERR2497887 | MDR-TB | lineage4.9 | None | SRR29274080 | MDR-TB | lineage4.1.2.1 | None | ERR10680194 | MDR-TB | lineage4.8 | None | ERR4827864 | HR-TB | lineage4.8 | None | SRR21576735 | MDR-TB | lineage2.2.1 | None | ERR13276205 | Pre-XDR-TB | lineage4.5 | None | ERR4827605 | HR-TB | lineage4.8 | None | SRR29289355 | Pre-XDR-TB | lineage4.5 | None | ERR8774333 | MDR-TB | lineage4.6.1.2 | None | ERR16022275 | Pre-XDR-TB | lineage4.5 | None | SRR15316587 | MDR-TB | lineage2.2.1 | None | ERR11488978 | MDR-TB | lineage4.3.4.2.1 | None | SRR24256011 | HR-TB | lineage4.8 | None | SRR19276613 | HR-TB | lineage2.2.1 | None | ERR13284241 | MDR-TB | lineage4.2.2.2 | None | ERR5865894 | MDR-TB | lineage4.3.3 | None | ERR13284012 | MDR-TB | lineage1.2.1.2.1 | None | SRR15315941 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800208 | HR-TB | lineage4.1.1.3 | in | ERR4800303 | Pre-XDR-TB | lineage4.1.2.1 | in | SRR10315692 | MDR-TB | lineage2.2.1 | None | SRR29052829 | Pre-XDR-TB | lineage4.5 | None | SRR1049600 | MDR-TB | lineage4.6.1.2 | None | SRR1163233 | MDR-TB | lineage4.3.4.2.1 | None | ERR5897112 | Pre-XDR-TB | lineage4.5 | None | ERR4423681 | MDR-TB | lineage4.6.1.2 | None | ERR4811286 | MDR-TB | lineage2.2.1 | cn | ERR4811572 | MDR-TB | lineage2.2.1 | cn | ERR4809261 | MDR-TB | lineage4.3.2.1 | za | ERR2707144 | MDR-TB | lineage4.8 | cd | ERR502932 | MDR-TB | lineage2.2.1 | None | ERR8975535 | MDR-TB | lineage4.8 | None | SRR1165426 | MDR-TB | lineage4.3.4.2.1 | None | SRR15315828 | MDR-TB | lineage2.2.1 | None | SRR21276920 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380998 | MDR-TB | lineage4.6.1.2 | ug | ERR2516401 | MDR-TB | lineage4.7 | nl | ERR551231 | MDR-TB | lineage4.3.4.2.1 | sz | SRR6824294 | MDR-TB | lineage2.2.1 | cn | SRR6824668 | MDR-TB | lineage2.2.1;lineage4.5 | cn | SRR6824380 | MDR-TB | lineage2.2.1 | cn | SRR6824522 | MDR-TB | lineage2.2.2 | cn | ERR11488387 | MDR-TB | lineage2.2.1 | None | ERR439983 | HR-TB | lineage5.3 | None | ERR2791541 | HR-TB | lineage4.1.2.1 | None | ERR10610104 | MDR-TB | lineage2.2.1 | None | DRR130092 | MDR-TB | lineage2.2.1 | None | SRR20970054 | MDR-TB | lineage2.2.1 | None | SRR21277573 | MDR-TB | lineage2.2.1 | None | ERR5865896 | MDR-TB | lineage4.3.3 | None | ERR4800199 | MDR-TB | lineage4.8 | in | ERR4797163 | Pre-XDR-TB | lineage2.2.1 | in | ERR13288799 | HR-TB | lineage2.2.1.1 | None | SRR3105738 | HR-TB | lineage2.2.1 | None | ERR552443 | MDR-TB | lineage4.8 | None | SRR1013650 | Pre-XDR-TB | lineage2.2.2 | None | ERR11488879 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR10748486 | MDR-TB | lineage4.1.1.3 | None | SRR10040427 | Pre-XDR-TB | lineage4.5 | None | ERR9119598 | MDR-TB | lineage5 | None | SRR1723460 | MDR-TB | lineage2.2.1 | cn | SRR29772798 | MDR-TB | lineage1.1.2 | None | ERR2179676 | MDR-TB | lineage4.5 | cn | SRR6930919 | MDR-TB | lineage1.2.1.2.1 | None | ERR13276386 | MDR-TB | lineage4 | None | ERR1465967 | MDR-TB | lineage4.8 | None | SRR25207107 | MDR-TB | lineage4.4.2 | None | ERR551131_ERR551130 | MDR-TB | lineage4.8 | None | SRR29051017 | HR-TB | lineage4.1.1.1 | None | ERR551130 | MDR-TB | lineage4.8 | None | ERR13292227 | HR-TB | lineage4.3.4.2 | None | SRR18665477 | MDR-TB | lineage4.1.2.1 | None | SRR25515066 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR20970063 | MDR-TB | lineage2.2.1 | None | ERR279635 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR1062888 | MDR-TB | lineage4.6.1.2 | None | ERR13111154 | HR-TB | lineage4.1.2.1 | None | SRR1049599 | MDR-TB | lineage4.6.1.2 | None | SRR29289171 | Pre-XDR-TB | lineage3 | None | ERR2099789 | MDR-TB | lineage4.1.2.1 | es | SAMEA104221066 | MDR-TB | lineage4.1.2.1 | es | ERR2099785 | MDR-TB | lineage4.1.2.1 | es | ERR4798912 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4872136 | MDR-TB | lineage4.1.3 | None | SRR29231724 | MDR-TB | lineage4.8 | None | SRR29051492 | MDR-TB | lineage4.3.3 | None | ERR13291138 | Pre-XDR-TB | lineage2.2.1 | None | ERR3148192 | MDR-TB | lineage4.3.3 | mx | SRR24827305 | HR-TB | lineage2.2.1 | None | DRR130193 | Pre-XDR-TB | lineage4.9 | None | ERR4813382 | HR-TB | lineage4.9 | None | SRR29017095 | MDR-TB | lineage2.2.1.2 | None | SRR25207072 | MDR-TB | lineage2.2.1 | None | ERR13290877 | HR-TB | lineage4.9 | None | ERR13285148 | Pre-XDR-TB | lineage4.9 | None | ERR3148038 | Pre-XDR-TB | lineage4.9 | None | SRR25207247 | MDR-TB | lineage2.2.2 | None | SAMN02414856 | MDR-TB | lineage4.3.4.2.1 | se | ERR13291121 | Pre-XDR-TB | lineage2.2.1 | None | ERR439932 | MDR-TB | lineage5.1.1 | None | SRR671836 | HR-TB | lineage2.2.1 | cn | SRR13583390 | HR-TB | lineage4.1.2.1 | None | SRR1723865 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131022 | HR-TB | lineage2.2.1 | None | ERR4810965 | MDR-TB | lineage2.2.2 | cn | ERR4810628 | MDR-TB | lineage4.4.2 | cn | ERR2184208 | HR-TB | lineage4.1.1 | pe | ERR3287588 | HR-TB | lineage4.3.4.2 | None | ERR718464 | MDR-TB | lineage4.4.2 | th | SRR27069414 | MDR-TB | lineage4.5 | None | SRR28393548 | MDR-TB | lineage4 | None | ERR718244 | HR-TB | lineage2.2.1 | th | ERR4813962 | Pre-XDR-TB | lineage4.1.2.1 | br | ERR5897104 | Pre-XDR-TB | lineage4.5 | None | ERR2706939 | MDR-TB | lineage4.7 | cd | ERR4830503 | MDR-TB | lineage2.2.1 | None | ERR4829985 | MDR-TB | lineage4.6.2.2 | None | ERR1023406 | HR-TB | lineage2.2.1 | None | ERR4828953 | Pre-XDR-TB | lineage4 | None | SRR9971141 | MDR-TB | lineage2.2.1 | None | ERR11043505 | MDR-TB | lineage4.2.2.1;lineage5 | None | ERR1465842 | MDR-TB | lineage4.8 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | ERR3806631 | MDR-TB | lineage6 | None | SRR18002928 | MDR-TB | lineage2.2.1 | None | ERR11488888 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR21576614 | MDR-TB | lineage4.5 | None | SAMEA2533723 | MDR-TB | lineage4.8 | uz | SAMEA2534652 | MDR-TB | lineage4.8 | uz | SAMEA2534862 | MDR-TB | lineage2.2.1 | uz | ERR551070 | HR-TB | lineage6.3.3 | None | SAMEA4041329 | MDR-TB | lineage4.8 | None | ERR4819109 | Pre-XDR-TB | lineage4 | gb | ERR4820895 | HR-TB | lineage4.3.4.2.1 | gb | ERR2041751 | MDR-TB | lineage4.1.2.1 | rs | SRR6824481 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824486 | MDR-TB | lineage4.5 | cn | SRR1163388 | MDR-TB | lineage4.3.4.2.1 | None | SRR21676429 | HR-TB | lineage2.2.1 | None | ERR4827859 | HR-TB | lineage4.8 | None | SRR28393374 | MDR-TB | lineage4.1.2.1 | None | SRR29050650 | HR-TB | lineage4.1.2.1 | None | ERR11488471 | MDR-TB | lineage4.3.4.1 | None | SRR25206876 | MDR-TB | lineage2.2.1 | None | SRR25515411 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680057 | MDR-TB | lineage4.4.1.1 | None | ERR4813822 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4 | None | ERR8774332 | MDR-TB | lineage4.6.1.2 | None | SRR22251155 | MDR-TB | lineage4.5 | None | SRR13583445 | HR-TB | lineage4.1.1.1 | None | ERR10680176 | MDR-TB | lineage4.1.2.1 | None | SRR25515784 | HR-TB | lineage4.5 | None | SRR18495628 | HR-TB | lineage4.5 | None | ERR552443_ERR552442 | MDR-TB | lineage4.8 | None | SAMN03246584 | Pre-XDR-TB | lineage2.2.1 | cn | SRR12420581 | MDR-TB | lineage2.2.1 | None | SRR20969990 | HR-TB | lineage4.5 | None | SRR13583433 | MDR-TB | lineage4.3.3 | None | SRR16115013 | HR-TB | lineage4.3.4.2 | None | ERR11081547 | MDR-TB | lineage4.1.2.1 | None | SRR18910994 | HR-TB | lineage4.3.4.2 | None | ERR2653069 | MDR-TB | lineage4.1.1.3 | None | ERR9806839 | MDR-TB | lineage2.2.1 | None | ERR11082342 | MDR-TB | lineage4.2.2.2 | None | ERR9121553 | MDR-TB | lineage4.1.2.1 | None | SRR1723757 | MDR-TB | lineage2.2.1 | cn | ERR2884681 | MDR-TB | lineage4.1.2.1 | None | SRR1723955 | MDR-TB | lineage4.5 | cn | ERR13258505 | MDR-TB | lineage2.2.1 | None | ERR13253330 | XDR-TB | lineage4.5 | None | ERR13288842 | HR-TB | lineage4.8 | None | SRR10808440 | HR-TB | lineage4.1.1 | None | ERR13285171 | MDR-TB | lineage4.1.2.1 | None | ERR11081292 | MDR-TB | lineage1.2.1.2.1 | None | ERR2884681_ERR2099784 | MDR-TB | lineage4.1.2.1 | None | ERR4813849 | Pre-XDR-TB | lineage4.7 | None | ERR4423680 | MDR-TB | lineage4.6.1.2 | None | ERR13232725 | MDR-TB | lineage4.9 | None | SRR29017150 | MDR-TB | lineage1.1.3.1 | None | ERR2099784 | MDR-TB | lineage4.1.2.1 | None | SRR1049047 | Pre-XDR-TB | lineage2.2.2 | None | ERR5897118 | Pre-XDR-TB | lineage4.5 | None | ERR13285165 | MDR-TB | lineage4.1.2.1 | None |
|---|
