Rv2428 - c.-54C>T
Drug resistance types
0 Sensitive
0 RR-TB
36 HR-TB
126 MDR-TB
44 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.3.3 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.8 | 21 |
| lineage2.2.1 | 54 |
| lineage4.1.1.1 | 2 |
| lineage5.1.1 | 1 |
| lineage4.1.2.1 | 22 |
| lineage4.5 | 18 |
| lineage4.6.1.2 | 7 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2.1 | 9 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage2.2.2 | 9 |
| lineage4.7 | 3 |
| lineage4 | 8 |
| lineage4.4.2 | 3 |
| lineage4.9 | 4 |
| lineage4.3.3 | 5 |
| lineage5.3 | 1 |
| lineage5 | 2 |
| lineage4.1.1.3 | 4 |
| lineage2.1 | 1 |
| lineage4.3.4.1 | 4 |
| lineage4.3.4.2 | 3 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1 | 3 |
| lineage4.1.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage6 | 1 |
| lineage4.1.2.1;lineage4.3.4 | 1 |
| lineage4.5;lineage4.8 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.2.2.1;lineage5 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 207 |
Geographic prevalence
Country level data for this variant is available for 58 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR551070 | HR-TB | lineage6.3.3 | None | ERR1633939 | Pre-XDR-TB | lineage2.2.1.1 | za | ERR4800199 | MDR-TB | lineage4.8 | in | ERR4811358 | MDR-TB | lineage2.2.1 | cn | ERR279635 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002928 | MDR-TB | lineage2.2.1 | None | SRR13583445 | HR-TB | lineage4.1.1.1 | None | ERR2707144 | MDR-TB | lineage4.8 | cd | SRR15723128 | HR-TB | lineage2.2.1 | None | SRR21277573 | MDR-TB | lineage2.2.1 | None | SAMEA2534652 | MDR-TB | lineage4.8 | uz | ERR552443_ERR552442 | MDR-TB | lineage4.8 | None | ERR4822377 | Pre-XDR-TB | lineage2.2.1 | kg | ERR439932 | MDR-TB | lineage5.1.1 | None | SRR25206876 | MDR-TB | lineage2.2.1 | None | SAMEA104221066 | MDR-TB | lineage4.1.2.1 | es | ERR11044144 | Pre-XDR-TB | lineage4.5 | None | SRR20970054 | MDR-TB | lineage2.2.1 | None | ERR8774332 | MDR-TB | lineage4.6.1.2 | None | ERR4811572 | MDR-TB | lineage2.2.1 | cn | SRR25389515 | MDR-TB | lineage2.2.1 | None | ERR10610104 | MDR-TB | lineage2.2.1 | None | ERR2884681 | MDR-TB | lineage4.1.2.1 | None | SRR20970063 | MDR-TB | lineage2.2.1 | None | ERR4813962 | Pre-XDR-TB | lineage4.1.2.1 | br | ERR4829985 | MDR-TB | lineage4.6.2.2 | None | ERR551231 | MDR-TB | lineage4.3.4.2.1 | sz | ERR4809261 | MDR-TB | lineage4.3.2.1 | za | ERR4827606 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR1023406 | HR-TB | lineage2.2.1 | None | SRR6824668 | MDR-TB | lineage2.2.1;lineage4.5 | cn | ERR4827859 | HR-TB | lineage4.8 | None | ERR551131_ERR551130 | MDR-TB | lineage4.8 | None | ERR9030268 | MDR-TB | lineage4.8 | None | SRR1049046 | Pre-XDR-TB | lineage2.2.2 | None | ERR2884681_ERR2099784 | MDR-TB | lineage4.1.2.1 | None | ERR4813849 | Pre-XDR-TB | lineage4.7 | None | ERR8975535 | MDR-TB | lineage4.8 | None | ERR4423680 | MDR-TB | lineage4.6.1.2 | None | ERR4829697 | Pre-XDR-TB | lineage4 | None | ERR718464 | MDR-TB | lineage4.4.2 | th | ERR2516401 | MDR-TB | lineage4.7 | nl | ERR4811286 | MDR-TB | lineage2.2.1 | cn | ERR2497887 | MDR-TB | lineage4.9 | None | ERR3148192 | MDR-TB | lineage4.3.3 | mx | SRR1167084 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488387 | MDR-TB | lineage2.2.1 | None | DRR130193 | Pre-XDR-TB | lineage4.9 | None | ERR439983 | HR-TB | lineage5.3 | None | SRR21576614 | MDR-TB | lineage4.5 | None | SRR1062888 | MDR-TB | lineage4.6.1.2 | None | ERR4872200 | MDR-TB | lineage5 | None | SRR13583390 | HR-TB | lineage4.1.2.1 | None | SRR15316372 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207072 | MDR-TB | lineage2.2.1 | None | ERR10748486 | MDR-TB | lineage4.1.1.3 | None | SRR11828966 | HR-TB | lineage2.1 | None | SRR15315941 | Pre-XDR-TB | lineage2.2.1 | None | SRR24827305 | HR-TB | lineage2.2.1 | None | SRR1723437 | MDR-TB | lineage2.2.2 | cn | ERR4810965 | MDR-TB | lineage2.2.2 | cn | ERR11488471 | MDR-TB | lineage4.3.4.1 | None | SRR1013651 | Pre-XDR-TB | lineage2.2.2 | None | ERR4827864 | HR-TB | lineage4.8 | None | SRR1723865 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515066 | Pre-XDR-TB | lineage2.2.1 | None | ERR3335771 | Pre-XDR-TB | lineage4.5 | pk | ERR5897104 | Pre-XDR-TB | lineage4.5 | None | ERR5897112 | Pre-XDR-TB | lineage4.5 | None | SAMN02414856 | MDR-TB | lineage4.3.4.2.1 | se | SRR9971141 | MDR-TB | lineage2.2.1 | None | ERR1035362 | MDR-TB | lineage4.1.2.1 | br | SRR25515784 | HR-TB | lineage4.5 | None | ERR502932 | MDR-TB | lineage2.2.1 | None | ERR4423681 | MDR-TB | lineage4.6.1.2 | None | SAMN02360604 | Pre-XDR-TB | lineage2.2.2 | kr | DRR130059 | XDR-TB | lineage4.5 | None | SRR18910994 | HR-TB | lineage4.3.4.2 | None | SRR21676429 | HR-TB | lineage2.2.1 | None | ERR2099785 | MDR-TB | lineage4.1.2.1 | es | SRR25207247 | MDR-TB | lineage2.2.2 | None | ERR4828844 | Pre-XDR-TB | lineage4 | None | SRR1013650 | Pre-XDR-TB | lineage2.2.2 | None | ERR9806839 | MDR-TB | lineage2.2.1 | None | ERR10680194 | MDR-TB | lineage4.8 | None | ERR11082342 | MDR-TB | lineage4.2.2.2 | None | ERR2677415 | MDR-TB | lineage4 | de | ERR4828953 | Pre-XDR-TB | lineage4 | None | SRR22251155 | MDR-TB | lineage4.5 | None | ERR9121553 | MDR-TB | lineage4.1.2.1 | None | SRR20969990 | HR-TB | lineage4.5 | None | SRR13583433 | MDR-TB | lineage4.3.3 | None | SRR10808440 | HR-TB | lineage4.1.1 | None | ERR1465967 | MDR-TB | lineage4.8 | None | ERR4872137 | MDR-TB | lineage4.1.3 | None | ERR11488888 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR4800424 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR9119598 | MDR-TB | lineage5 | None | ERR2510825 | HR-TB | lineage2.2.1 | it | SRR12420693 | MDR-TB | lineage2.2.1 | None | ERR11081547 | MDR-TB | lineage4.1.2.1 | None | SRR25207328 | MDR-TB | lineage2.2.1 | None | ERR4829761 | Pre-XDR-TB | lineage4 | None | ERR551130 | MDR-TB | lineage4.8 | None | SRR18665477 | MDR-TB | lineage4.1.2.1 | None | ERR2653069 | MDR-TB | lineage4.1.1.3 | None | DRR130092 | MDR-TB | lineage2.2.1 | None | ERR3078008 | MDR-TB | lineage4.6.1.1 | None | ERR11081292 | MDR-TB | lineage1.2.1.2.1 | None | SRR25515411 | Pre-XDR-TB | lineage2.2.1 | None | ERR2099784 | MDR-TB | lineage4.1.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SAMN02380998 | MDR-TB | lineage4.6.1.2 | ug | ERR11082088 | MDR-TB | lineage4.1.2.1 | None | ERR2184208 | HR-TB | lineage4.1.1 | pe | ERR4827605 | HR-TB | lineage4.8 | None | SRR16370591 | Pre-XDR-TB | lineage4.5 | None | ERR552741_ERR552740 | MDR-TB | lineage2.2.1 | None | ERR2706939 | MDR-TB | lineage4.7 | cd | ERR3806631 | MDR-TB | lineage6 | None | SRR1165426 | MDR-TB | lineage4.3.4.2.1 | None | ERR4813822 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4 | None | SRR1723460 | MDR-TB | lineage2.2.1 | cn | SRR1163388 | MDR-TB | lineage4.3.4.2.1 | None | ERR1465842 | MDR-TB | lineage4.8 | None | ERR4830157 | HR-TB | lineage4.5;lineage4.8 | None | ERR11043607 | MDR-TB | lineage4 | None | SRR6824522 | MDR-TB | lineage2.2.2 | cn | SRR19276613 | HR-TB | lineage2.2.1 | None | ERR11465075 | MDR-TB | lineage1.2.2.2 | None | ERR4798914 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR2179676 | MDR-TB | lineage4.5 | cn | SRR6824380 | MDR-TB | lineage2.2.1 | cn | ERR4800208 | HR-TB | lineage4.1.1.3 | in | SRR10315692 | MDR-TB | lineage2.2.1 | None | SRR671836 | HR-TB | lineage2.2.1 | cn | SRR1163233 | MDR-TB | lineage4.3.4.2.1 | None | ERR2041751 | MDR-TB | lineage4.1.2.1 | rs | SRR7131022 | HR-TB | lineage2.2.1 | None | SRR6824294 | MDR-TB | lineage2.2.1 | cn | SRR27069414 | MDR-TB | lineage4.5 | None | SRR28393374 | MDR-TB | lineage4.1.2.1 | None | SRR28393388 | MDR-TB | lineage4.3.4.1 | None | ERR5897118 | Pre-XDR-TB | lineage4.5 | None | ERR4820895 | HR-TB | lineage4.3.4.2.1 | gb | SRR6824481 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3287588 | HR-TB | lineage4.3.4.2 | None | ERR2516523 | MDR-TB | lineage4.1.1 | pe | SRR10040427 | Pre-XDR-TB | lineage4.5 | None | SRR18495628 | HR-TB | lineage4.5 | None | SAMN03246584 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3148038 | Pre-XDR-TB | lineage4.9 | None | SRR21276920 | Pre-XDR-TB | lineage2.2.1 | None | SRR671826 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4872136 | MDR-TB | lineage4.1.3 | None | ERR6544658 | HR-TB | lineage4.1.1.1 | None | ERR11043505 | MDR-TB | lineage4.2.2.1;lineage5 | None | SRR12420581 | MDR-TB | lineage2.2.1 | None | ERR2099789 | MDR-TB | lineage4.1.2.1 | es | ERR552442 | MDR-TB | lineage4.8 | None | ERR10680057 | MDR-TB | lineage4.4.1.1 | None | ERR126642 | HR-TB | lineage4.1.1.3 | mw | ERR5865895 | MDR-TB | lineage4.3.3 | None | ERR495166 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2791531 | HR-TB | lineage4.1.2.1 | None | ERR552443 | MDR-TB | lineage4.8 | None | SAMEA2534862 | MDR-TB | lineage2.2.1 | uz | ERR5865896 | MDR-TB | lineage4.3.3 | None | SAMEA2533723 | MDR-TB | lineage4.8 | uz | SRR15315828 | MDR-TB | lineage2.2.1 | None | SRR25207107 | MDR-TB | lineage4.4.2 | None | ERR11488879 | Pre-XDR-TB | lineage4.3.4.1 | None | SAMEA4041329 | MDR-TB | lineage4.8 | None | ERR4830503 | MDR-TB | lineage2.2.1 | None | ERR11044138 | Pre-XDR-TB | lineage4.5 | None | SRR1723757 | MDR-TB | lineage2.2.1 | cn | ERR3273126 | MDR-TB | lineage2.2.1.1 | None | SRR16115013 | HR-TB | lineage4.3.4.2 | None | SRR1140717 | MDR-TB | lineage4.6.1.2 | None | ERR1034816 | MDR-TB | lineage4.3.4.2.1 | pt | SRR1049047 | Pre-XDR-TB | lineage2.2.2 | None | SRR3105738 | HR-TB | lineage2.2.1 | None | SRR21576735 | MDR-TB | lineage2.2.1 | None | ERR10680176 | MDR-TB | lineage4.1.2.1 | None | ERR4813382 | HR-TB | lineage4.9 | None | SRR9971358 | MDR-TB | lineage2.2.1 | None | ERR4819109 | Pre-XDR-TB | lineage4 | gb | ERR2791541 | HR-TB | lineage4.1.2.1 | None | ERR4829160 | MDR-TB | lineage4.6.2.2 | ng | SRR1723662 | MDR-TB | lineage2.2.1 | cn | ERR4810628 | MDR-TB | lineage4.4.2 | cn | SRR19315458 | Pre-XDR-TB | lineage4.5 | None | ERR4800303 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR8774333 | MDR-TB | lineage4.6.1.2 | None | SRR26558641 | MDR-TB | lineage4.1.2 | None | ERR551131 | MDR-TB | lineage4.8 | None | ERR11488978 | MDR-TB | lineage4.3.4.2.1 | None | SRR24256011 | HR-TB | lineage4.8 | None | ERR4797163 | Pre-XDR-TB | lineage2.2.1 | in | ERR5865894 | MDR-TB | lineage4.3.3 | None | ERR1465842_ERR1465967 | MDR-TB | lineage4.8 | None | SRR15315827 | MDR-TB | lineage2.2.1 | None | ERR4798912 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4829714 | HR-TB | lineage4.5 | it | SRR6930919 | MDR-TB | lineage1.2.1.2.1 | None | ERR718244 | HR-TB | lineage2.2.1 | th | SRR28393548 | MDR-TB | lineage4 | None |
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