Rv1819c - c.1653dupC
Drug resistance types
3 Sensitive
0 RR-TB
0 HR-TB
25 MDR-TB
28 Pre-XDR-TB
3 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.2 | 1 |
| La1.2.BCG | 2 |
| lineage2.2.1 | 8 |
| lineage4.1.2.1 | 4 |
| lineage4.3.3 | 16 |
| lineage4.3.4.1 | 2 |
| lineage3 | 3 |
| lineage4.4.1.1 | 7 |
| lineage4.3.4.2 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1 | 1 |
| lineage4.8 | 1 |
| lineage4 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 59 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12062528 | Pre-XDR-TB | lineage4.4.2 | None | SRR6930897 | XDR-TB | La1.2.BCG | None | ERR4872262 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813171 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2653083 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180385 | MDR-TB | lineage2.2.1 | None | ERR1035321 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR13232737 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813863 | MDR-TB | lineage4.3.3 | br | ERR8665561 | Pre-XDR-TB | lineage4.3.3 | None | ERR9907714 | MDR-TB | lineage4.3.3 | None | ERR13262083 | Pre-XDR-TB | lineage3 | None | SRR833117 | MDR-TB | lineage4.4.1.1 | None | ERR8665668 | Pre-XDR-TB | lineage4.3.3 | None | ERR13261333 | XDR-TB | lineage4.3.4.2 | None | SRR833014 | MDR-TB | lineage4.4.1.1 | None | ERR5979448 | MDR-TB | lineage3 | None | SAMN02053774 | MDR-TB | lineage4.4.1.1 | za | ERR8665801 | Pre-XDR-TB | lineage4.3.3 | None | ERR046917 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4813216 | Pre-XDR-TB | lineage4.3.3 | pe | SRR1165658 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR13260410 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13232595 | Pre-XDR-TB | lineage4.3.3 | None | ERR13273367 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR8665549 | Pre-XDR-TB | lineage4.3.3 | None | SRR28858513 | MDR-TB | lineage4.2.1.1 | None | SRR13232723 | Pre-XDR-TB | lineage4.3.3 | None | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR8665987 | Pre-XDR-TB | lineage4.3.3 | None | ERR13291094 | MDR-TB | lineage4.5 | None | ERR2516532 | MDR-TB | lineage4.1.1 | pe | SRR29273801 | Pre-XDR-TB | lineage4.8 | None | SAMN02586083 | MDR-TB | lineage2.2.1 | za | SRR28393550 | MDR-TB | lineage4.3.3 | None | ERR3287505 | MDR-TB | lineage4 | None | ERR2653195 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR8665829 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02053771 | MDR-TB | lineage4.4.1.1 | za | SRR28393448 | MDR-TB | lineage4.1.2.1 | None | ERR8665667 | Pre-XDR-TB | lineage4.3.3 | None | ERR2516855 | Sensitive | lineage3 | gb | ERR13260081 | XDR-TB | La1.2.BCG | None | ERR10748249 | MDR-TB | lineage4.3.3 | None | ERR4813104 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR1181042 | MDR-TB | lineage2.2.1 | None | ERR12118037 | MDR-TB | lineage4.3.3 | None | ERR3287619 | MDR-TB | lineage4.3.4.2 | pe | SRR25514964 | Sensitive | lineage2.2.1 | None | SAMN02403578 | Pre-XDR-TB | lineage4.4.1.1.1 | za | ERR2516733 | MDR-TB | lineage2.2.1 | pe | SRR833017 | MDR-TB | lineage4.4.1.1 | None | ERR11488379 | MDR-TB | lineage1.1.3.1 | None | SRR22249850 | Sensitive | lineage4.2.1.1 | None | ERR1035282 | MDR-TB | lineage4.3.4.1 | br | ERR2516678 | MDR-TB | lineage4 | pe | SRR16178828 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830838 | Pre-XDR-TB | lineage4.2.2.2 | et | SRR833018 | MDR-TB | lineage4.4.1.1 | None |
|---|
