lineage | Count |
---|---|
lineage2.2.2 | 6 |
lineage1.1.1.1 | 9 |
lineage4.3 | 1 |
lineage2.2.1 | 42 |
lineage4.8 | 3 |
lineage4.2.2.2 | 1 |
lineage1.2.1.2.1 | 2 |
lineage2.2.1.1 | 4 |
lineage4.9 | 5 |
lineage4.3.4.1 | 1 |
lineage1.2.2.1 | 1 |
lineage4.5 | 4 |
lineage4.1.2.1 | 3 |
lineage2.2.1;lineage2.2.2 | 3 |
lineage3 | 3 |
lineage1.1.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4 | 3 |
lineage4.3.3 | 1 |
lineage4.4.2 | 1 |
lineage3.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2.1 | 1 |
lineage7 | 1 |
lineage1.2.1.2 | 1 |
spoligotype | Count |
---|---|
None | 100 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR26399965 | HR-TB | lineage2.2.2 | None |
ERR9125003 | HR-TB | lineage1.1.1.1 | None |
ERR11081018 | HR-TB | lineage4.3 | None |
SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25206997 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11081079 | MDR-TB | lineage4.8 | None |
ERR4830801 | MDR-TB | lineage4.2.2.2 | et |
ERR4811057 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR11662260 | MDR-TB | lineage2.2.1 | None |
SRR21576671 | MDR-TB | lineage2.2.1 | None |
SRR21685364 | HR-TB | lineage1.2.1.2.1 | None |
DRR473747 | HR-TB | lineage2.2.1.1 | None |
ERR2516579 | MDR-TB | lineage4.9 | nl |
ERR4814465 | HR-TB | lineage4.9 | gb |
ERR4831037 | MDR-TB | lineage4.9 | np |
SRR10040302 | MDR-TB | lineage2.2.1 | None |
ERR13291045 | MDR-TB | lineage4.9 | None |
SRR8651603 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR6280213 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR10680055 | MDR-TB | lineage4.8 | None |
SRR6824568 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR8217923 | HR-TB | lineage2.2.1 | None |
ERR9125350 | MDR-TB | lineage1.1.1.1 | None |
ERR7363053 | Pre-XDR-TB | lineage4.3.4.1 | None |
ERR4830191 | HR-TB | lineage2.2.2 | vn |
SRR28044939 | MDR-TB | lineage1.2.2.1 | None |
SRR30180215 | MDR-TB | lineage2.2.1 | None |
SRR12416829 | MDR-TB | lineage2.2.1 | None |
ERR13286154 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13232759 | MDR-TB | lineage4.5 | None |
SRR29681325 | HR-TB | lineage4.1.2.1 | None |
SRR16058312 | HR-TB | lineage2.2.1 | None |
ERR4809305 | MDR-TB | lineage2.2.1 | za |
SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SRR26112436 | HR-TB | lineage2.2.1 | None |
SRR12882611 | HR-TB | lineage3 | None |
ERR13261232 | HR-TB | lineage2.2.1 | None |
SRR28119719 | MDR-TB | lineage2.2.2 | None |
ERR2513085 | HR-TB | lineage1.1.2 | gb |
ERR4828653 | HR-TB | lineage1.1.1.1 | vn |
SRR11972410 | MDR-TB | lineage2.2.1 | None |
SRR29093933 | MDR-TB | lineage2.2.1 | None |
SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SRR7654038 | HR-TB | lineage2.2.1 | None |
ERR4819448 | HR-TB | lineage4.9 | gb |
SRR29051246 | HR-TB | lineage1.1.1.1 | None |
ERR13191623 | MDR-TB | lineage2.2.2 | None |
SRR2024951 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR9125422 | HR-TB | lineage2.2.1 | None |
SRR21277866 | MDR-TB | lineage2.2.1 | None |
SRR15600382 | MDR-TB | lineage2.2.1.1 | None |
SRR22424730 | MDR-TB | lineage1.2.2.2 | None |
ERR13286198 | MDR-TB | lineage2.2.1 | None |
ERR13288752 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9119261 | HR-TB | lineage2.2.2 | None |
SRR21277864 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10040287 | Pre-XDR-TB | lineage2.2.1 | None |
SRR22251534 | HR-TB | lineage2.2.2 | None |
ERR3132094 | MDR-TB | lineage4 | None |
SRR20969864 | HR-TB | lineage2.2.1 | None |
ERR13243520 | MDR-TB | lineage2.2.1 | None |
SRR6982237 | HR-TB | lineage2.2.1 | None |
ERR6866114 | HR-TB | lineage4.3.3 | None |
ERR3273205 | MDR-TB | lineage2.2.1 | None |
ERR13245561 | Pre-XDR-TB | lineage4 | None |
SRR26112316 | HR-TB | lineage4.4.2 | None |
SRR29017493 | HR-TB | lineage1.1.1.1 | None |
SRR5067700 | HR-TB | lineage2.2.1.1 | vn |
SRR14088364 | MDR-TB | lineage3 | None |
SRR6964505 | Pre-XDR-TB | lineage3 | None |
SRR17658579 | MDR-TB | lineage3.1.2 | None |
DRR473689 | HR-TB | lineage2.2.1 | None |
SRR28394289 | MDR-TB | lineage2.2.1 | None |
SRR20969371 | MDR-TB | lineage4.5 | None |
SRR29274140 | MDR-TB | lineage4.1.2.1 | None |
ERR4831800 | HR-TB | lineage2.2.1.1 | vn |
SRR28393443 | MDR-TB | lineage4.1.1.3 | None |
ERR8975445 | HR-TB | lineage4.3.4.2.1 | None |
SRR15368897 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25515435 | HR-TB | lineage4.5 | None |
SRR20969638 | MDR-TB | lineage2.2.1 | None |
SRR25534200 | Pre-XDR-TB | lineage2.2.1 | None |
SRR21576711 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25515763 | HR-TB | lineage4.5 | None |
SRR15368899 | MDR-TB | lineage2.2.1 | None |
SRR21732110 | HR-TB | lineage1.2.1.2.1 | None |
ERR7737753 | MDR-TB | lineage7 | None |
ERR3273180 | MDR-TB | lineage2.2.1 | None |
ERR13245535 | Pre-XDR-TB | lineage4 | None |
SRR26399164 | HR-TB | lineage1.1.1.1 | None |
SRR5073834 | HR-TB | lineage2.2.1 | vn |
SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None |
SRR21576717 | MDR-TB | lineage1.2.1.2 | None |
SRR29273963 | MDR-TB | lineage4.1.2.1 | None |
ERR13284226 | MDR-TB | lineage4.8 | None |
SRR16058006 | HR-TB | lineage1.1.1.1 | None |
SRR29055602 | MDR-TB | lineage2.2.1 | None |
ERR2515373 | MDR-TB | lineage2.2.1 | za |
ERR4828648 | HR-TB | lineage1.1.1.1 | None |
SRR16058036 | MDR-TB | lineage1.1.1.1 | None |