lineage | Count |
---|---|
lineage4.3.2 | 3 |
lineage4.3.3 | 8 |
lineage2.2.1 | 32 |
lineage3 | 10 |
lineage4.8 | 131 |
lineage4.9 | 4 |
lineage4.6 | 2 |
lineage4.3.4.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.2.1;lineage4.1.2.1 | 1 |
lineage4.1.2.1 | 11 |
lineage4.4.1.1 | 6 |
lineage4.7 | 2 |
lineage1.1.3.1 | 1 |
lineage1.1.1 | 2 |
lineage1.1.3 | 1 |
lineage2.2.2 | 2 |
La1.2 | 1 |
lineage4.2.1 | 6 |
lineage4.2.2.1 | 1 |
lineage1.1.3.2 | 2 |
La1.2.BCG | 1 |
lineage4.3.3;lineage3 | 1 |
lineage4 | 9 |
lineage3.1.1 | 4 |
lineage4.2.2.2 | 4 |
lineage3.1.2.1 | 1 |
lineage4.8.2 | 1 |
lineage4.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage5.1.4 | 1 |
La3 | 1 |
La1.7.1 | 2 |
La1.1 | 1 |
La1.4 | 1 |
1 | |
lineage4.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 262 |
ID | Drug resistance | Lineage | Country iso2 | ERR10969264 | Sensitive | lineage4.3.2 | None | ERR10465745 | Other | lineage4.3.3 | None | ERR11043169 | MDR-TB | lineage2.2.1 | None | ERR4276913 | MDR-TB | lineage3 | None | ERR4195506 | HR-TB | lineage4.8 | None | ERR4132451 | MDR-TB | lineage2.2.1 | None | ERR4799705 | RR-TB | lineage3 | in | ERR5979790 | Sensitive | lineage4.9 | None | ERR11049943 | Sensitive | lineage4.6 | None | ERR5979793 | Sensitive | lineage4.9 | None | ERR9907708 | MDR-TB | lineage4.3.4.2 | None | ERR7821162 | Sensitive | lineage4.3.2.1 | None | ERR9117778 | HR-TB | lineage3 | None | SRR10525342 | Pre-XDR-TB | lineage4.2.1;lineage4.1.2.1 | None | SRR10525334 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9907750 | MDR-TB | lineage4.3.2 | None | SRR10272572 | Sensitive | lineage4.4.1.1 | None | SRR10525352 | HR-TB | lineage4.8 | None | SRR10525346 | Sensitive | lineage4.7 | None | SRR11972452 | MDR-TB | lineage1.1.3.1 | None | SRR11033665 | Sensitive | lineage4.3.3 | None | SRR11972209 | MDR-TB | lineage1.1.1 | None | SRR11972221 | HR-TB | lineage2.2.1 | None | SRR11972448 | Sensitive | lineage1.1.3 | None | SRR13232479 | Sensitive | lineage2.2.2 | None | SRR12199445 | Sensitive | lineage2.2.1 | None | SRR13232411 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423593 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232481 | Sensitive | lineage4.3.3 | None | SRR13423537 | RR-TB | lineage2.2.1 | None | SRR13986562 | Other | La1.2 | None | SRR11972170 | HR-TB | lineage3 | None | SRR16088135 | Sensitive | lineage4.8 | None | SRR16088228 | Other | lineage4.8 | None | SRR18715344 | Sensitive | lineage4.1.2.1 | None | SRR16370243 | HR-TB | lineage2.2.1 | None | SRR16088258 | Sensitive | lineage4.8 | None | SRR16088466 | MDR-TB | lineage4.3.4.2 | None | SRR16096991 | Sensitive | lineage4.9 | None | SRR18714906 | HR-TB | lineage4.2.1 | None | SRR18715065 | MDR-TB | lineage4.1.2.1 | None | SRR18715348 | Sensitive | lineage4.1.2.1 | None | SRR18715349 | MDR-TB | lineage4.1.2.1 | None | SRR18715345 | Sensitive | lineage4.1.2.1 | None | SRR19221478 | HR-TB | lineage2.2.1 | None | SRR18715351 | MDR-TB | lineage4.8 | None | SRR18715347 | Sensitive | lineage4.4.1.1 | None | SRR20995191 | Sensitive | lineage4.4.1.1 | None | SRR23861769 | Sensitive | lineage4.8 | None | ERR11069088 | MDR-TB | lineage2.2.2 | None | ERR11080943 | Sensitive | lineage4.8 | None | ERR11081272 | HR-TB | lineage4.2.2.1 | None | SRR23861883 | Sensitive | lineage4.8 | None | SRR23861893 | RR-TB | lineage4.1.2.1 | None | SRR23862092 | Sensitive | lineage4.2.1 | None | SRR23862108 | Sensitive | lineage4.8 | None | ERR4814738 | Other | lineage3 | gb | ERR2206052 | Sensitive | lineage4.3.2 | None | ERR4815189 | Sensitive | lineage1.1.3.2 | None | ERR4815781 | Other | La1.2.BCG | gb | SRR3675466 | Sensitive | lineage4.6 | None | ERR4815711 | Sensitive | lineage3 | None | ERR2229723 | HR-TB | lineage4.8 | None | ERR4814939 | Other | lineage4.3.3;lineage3 | gb | ERR2229545 | Sensitive | lineage4.8 | None | ERR2229549 | Sensitive | lineage4.8 | None | ERR2229742 | Other | lineage4 | None | ERR2229543 | Other | lineage4.8 | dk | ERR4815876 | Sensitive | lineage3 | gb | ERR2229002 | Sensitive | lineage4 | None | ERR2229005 | Sensitive | lineage4.8 | None | ERR2229015 | Sensitive | lineage4.8 | dk | ERR2229025 | Sensitive | lineage4 | None | ERR2229069 | Sensitive | lineage4.8 | dk | ERR2229553 | Sensitive | lineage4.8 | None | ERR2245281 | Sensitive | lineage3.1.1 | no | ERR2229027 | Sensitive | lineage4.8 | None | ERR2229555 | HR-TB | lineage4.8 | None | ERR2229067 | Sensitive | lineage4.8 | None | ERR4816086 | Other | lineage4.2.2.2 | None | ERR2229083 | Sensitive | lineage4.8 | dk | ERR2229571 | Sensitive | lineage4.8 | dk | ERR2229092 | Other | lineage4.8 | None | ERR2229103 | Sensitive | lineage4.8 | None | ERR2229578 | Sensitive | lineage4 | None | ERR2229098 | Sensitive | lineage4.8 | None | ERR2229087 | Sensitive | lineage4.8 | dk | ERR4816182 | Other | lineage3.1.2.1 | gb | ERR2229109 | Sensitive | lineage4.8 | None | ERR2229094 | Sensitive | lineage4.8 | dk | ERR2229569 | Sensitive | lineage4.8 | dk | ERR2229115 | Other | lineage4.8 | None | ERR2229114 | Sensitive | lineage4.8 | dk | ERR2229117 | Sensitive | lineage4.8 | dk | ERR2229581 | Other | lineage4.8 | None | ERR2229190 | Sensitive | lineage4.8 | None | ERR2229150 | Sensitive | lineage4.8 | dk | ERR2229159 | Sensitive | lineage4.8 | None | ERR2229599 | Sensitive | lineage4.8 | None | ERR2229179 | HR-TB | lineage4.8 | None | SRR6079920 | Sensitive | lineage4.8 | au | ERR2229144 | Other | lineage4.8 | None | ERR2229168 | Other | lineage4 | None | ERR2229184 | Sensitive | lineage4.8 | None | ERR2229201 | Sensitive | lineage4.8 | dk | ERR2229191 | Sensitive | lineage4.8 | dk | ERR2229609 | Sensitive | lineage4.8 | None | ERR2229240 | Sensitive | lineage4.8 | dk | ERR2229610 | Sensitive | lineage4.8 | None | ERR2229219 | Sensitive | lineage4.8 | None | ERR2229768 | Sensitive | lineage4 | None | ERR2229735 | Sensitive | lineage4.8 | dk | ERR2229245 | Sensitive | lineage4.8 | None | ERR2229629 | Sensitive | lineage4.8 | None | ERR2229243 | Sensitive | lineage4.8 | None | ERR2229628 | Sensitive | lineage4.8 | None | ERR2229246 | Sensitive | lineage4.8 | None | ERR2229216 | Sensitive | lineage4.8 | dk | ERR2229214 | Sensitive | lineage4.8 | dk | ERR4816555 | Other | lineage3 | None | ERR2229631 | Sensitive | lineage4.8 | None | ERR2229255 | Sensitive | lineage4.8 | dk | ERR2229275 | Sensitive | lineage4.8 | dk | ERR2229266 | Sensitive | lineage4.8 | None | ERR2229258 | Sensitive | lineage4.8 | dk | ERR2229624 | Sensitive | lineage4.8 | dk | ERR2229632 | Sensitive | lineage4.8 | None | ERR2229284 | Sensitive | lineage4.8 | None | ERR2229639 | Sensitive | lineage4.8 | dk | ERR2229224 | Sensitive | lineage4.8 | dk | ERR2229289 | Sensitive | lineage4.8 | None | ERR2229291 | Sensitive | lineage4.8 | None | ERR2229299 | Sensitive | lineage4.8 | None | ERR2229297 | Sensitive | lineage4.8 | dk | ERR2229295 | Sensitive | lineage4.8 | dk | ERR2229304 | Sensitive | lineage4.8 | dk | ERR2229300 | Sensitive | lineage4.8 | None | ERR2229646 | Sensitive | lineage4.8 | dk | ERR2229747 | Sensitive | lineage4.8 | dk | ERR2229351 | HR-TB | lineage4.8 | None | ERR2229309 | Sensitive | lineage4.8 | None | ERR2229310 | Sensitive | lineage4.8 | dk | ERR2229328 | Sensitive | lineage4.8 | dk | ERR2229338 | Sensitive | lineage4.8 | None | ERR2229341 | Sensitive | lineage4.8 | dk | ERR2229368 | Sensitive | lineage4.8 | None | ERR2229347 | Sensitive | lineage4.8 | dk | ERR2229372 | Sensitive | lineage4.8 | dk | ERR2229369 | Other | lineage4.8 | None | ERR2229376 | Other | lineage4.8 | None | ERR2229383 | Sensitive | lineage4.8 | None | ERR2229401 | Sensitive | lineage4.8 | None | ERR2229388 | Sensitive | lineage4 | None | ERR2229395 | Sensitive | lineage4.8 | None | ERR2229408 | Sensitive | lineage4.8 | dk | ERR2229411 | Sensitive | lineage4 | None | ERR2229414 | Sensitive | lineage4.8 | None | ERR2229418 | Sensitive | lineage4.8 | None | ERR2229428 | Sensitive | lineage4.8 | None | ERR2229687 | Sensitive | lineage4.8 | dk | ERR2229430 | Sensitive | lineage4.8 | dk | ERR2229701 | Sensitive | lineage4.8 | None | ERR2229441 | Sensitive | lineage4.8 | None | ERR2229444 | Sensitive | lineage4.8 | None | ERR2229709 | HR-TB | lineage4.8 | None | ERR2229450 | Sensitive | lineage4.8 | dk | ERR2229794 | Sensitive | lineage4.8 | dk | ERR2229711 | Sensitive | lineage4.8 | None | ERR2229714 | Sensitive | lineage4 | None | ERR2229464 | Sensitive | lineage4.8 | dk | ERR2229481 | Other | lineage4.8 | None | ERR2229476 | Sensitive | lineage4.8 | None | ERR2229475 | Sensitive | lineage4.8 | dk | ERR2229486 | Other | lineage4.8 | None | ERR4817441 | Sensitive | lineage4.2.2.2 | None | ERR2229514 | Sensitive | lineage4.8 | None | ERR2229477 | Sensitive | lineage4.8 | None | ERR2229485 | Sensitive | lineage4.8 | None | ERR2229497 | Sensitive | lineage4.8 | None | ERR2229510 | Sensitive | lineage4.8 | None | ERR2229726 | Sensitive | lineage4.8 | None | ERR2229474 | Sensitive | lineage4.8 | dk | SAMEA3449981 | Sensitive | lineage4.8 | None | ERR2229521 | Sensitive | lineage4.8 | None | ERR2229532 | Other | lineage4.8 | None | ERR2245294 | Sensitive | lineage3.1.1 | no | SRR6045972 | Pre-XDR-TB | lineage4.3.3 | gb | ERR2513384 | Other | lineage4.8.2 | gb | ERR2512846 | Sensitive | lineage4.1.2.1 | None | ERR4818023 | Other | lineage4.1.2 | gb | ERR4818093 | Sensitive | lineage3.1.1 | gb | ERR978802 | Sensitive | lineage4.4.1.1 | gl | ERR4817545 | Other | lineage4.8 | gb | ERR4818605 | Sensitive | lineage1.1.1 | gb | SRR5520605 | Sensitive | lineage2.2.1.1 | pg | ERR2513895 | Sensitive | lineage4.8 | None | ERR4820687 | Sensitive | lineage1.1.3.2 | gb | ERR2512893 | Sensitive | lineage4.2.2.2 | gb | ERR4819526 | Sensitive | lineage4.8 | gb | ERR2514446 | Sensitive | lineage4.2.1 | None | ERR4830872 | MDR-TB | lineage4.4.1.1 | sz | SRR5526782 | MDR-TB | lineage2.2.1.1 | None | ERR4821302 | Sensitive | lineage5.1.4 | None | SRR6045604 | Sensitive | La3 | None | ERR2815605 | Other | La1.7.1 | None | ERR2815611 | Sensitive | La1.1 | None | ERR4830794 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR11049765 | Other | La1.4 | None | ERR4828357 | Sensitive | lineage2.2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2659166 | Sensitive | None | ERR4821385 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827902 | MDR-TB | lineage2.2.1 | None | ERR4827927 | MDR-TB | lineage2.2.1 | None | ERR4827919 | MDR-TB | lineage2.2.1 | None | ERR4827448 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827450 | MDR-TB | lineage4.2.1 | None | ERR4827454 | MDR-TB | lineage2.2.1 | None | ERR4827938 | MDR-TB | lineage4.2.1 | None | ERR4827945 | MDR-TB | lineage2.2.1 | None | ERR4822300 | MDR-TB | lineage3 | de | ERR2815508 | Other | La1.7.1 | None | SRR6117349 | Sensitive | lineage4.9 | au | SRR6485042 | Sensitive | lineage4.8 | None | SRR6485146 | MDR-TB | lineage4.8 | None | ERR4830866 | MDR-TB | lineage4.4.1.1 | sz | SRR6046517 | Other | lineage4.8 | None | SRR6079956 | Sensitive | lineage2.2.1.1 | au | SRR6485060 | HR-TB | lineage3 | None | SRR6485002 | Sensitive | lineage2.2.1 | None | SRR6484879 | Sensitive | lineage2.2.1 | None | SRR6484883 | HR-TB | lineage2.2.1 | None | SRR6484941 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049797 | Sensitive | lineage4.8 | None | SRR6484933 | Other | lineage2.2.1 | None | SRR6785318 | Sensitive | lineage2.2.1 | None | SRR6785169 | Sensitive | lineage2.2.1 | None | SRR6785261 | HR-TB | lineage4.2.1.1 | None | SRR6785342 | Sensitive | lineage2.2.1 | None | SRR6785355 | Sensitive | lineage2.2.1 | None | SRR6785356 | Sensitive | lineage4.3.3 | None | SRR6785348 | HR-TB | lineage4.3.3 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6785473 | Sensitive | lineage4.8 | None | SRR6785423 | Sensitive | lineage2.2.1 | None | SRR6785519 | Sensitive | lineage2.2.1 | None | SRR9738476 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4831877 | HR-TB | lineage2.2.1 | vn | ERR11049824 | Sensitive | lineage4.3.3 | None | ERR11049823 | Sensitive | lineage4.3.3 | None | SRR8237323 | MDR-TB | lineage2.2.1 | np | SRR9738478 | Sensitive | lineage4.8 | None | SRR9738506 | MDR-TB | lineage4.8 | None | SRR9738479 | XDR-TB | lineage4.1.2.1 | None | SRR9738488 | Pre-XDR-TB | lineage4.8 | None | SRR9738516 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738525 | MDR-TB | lineage4.8 | None | SRR9738526 | MDR-TB | lineage4.1.2.1 | None | SRR9738537 | MDR-TB | lineage4.8 | None | SRR7592372 | Pre-XDR-TB | lineage4.2.1 | None | SRR7592389 | Pre-XDR-TB | lineage4.8 | None | SRR7592383 | MDR-TB | lineage4.7 | None |
---|