Rv1979c - c.-8682_*660del
Drug resistance types
0 Sensitive
2 RR-TB
273 HR-TB
5 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
114 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.2.BCG | 394 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 394 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29053017 | HR-TB | La1.2.BCG | None | ERR13264774 | HR-TB | La1.2.BCG | None | ERR13292142 | HR-TB | La1.2.BCG | None | SRR29356726 | HR-TB | La1.2.BCG | None | SRR17592374 | HR-TB | La1.2.BCG | None | SRR18911455 | HR-TB | La1.2.BCG | None | ERR766230 | Other | La1.2.BCG | None | ERR13291881 | HR-TB | La1.2.BCG | None | SRR7983756 | Other | La1.2.BCG | None | ERR13291264 | HR-TB | La1.2.BCG | None | SRR28858627 | HR-TB | La1.2.BCG | None | ERR4819826 | HR-TB | La1.2.BCG | None | ERR4820186 | HR-TB | La1.2.BCG | None | SRR7069595 | Other | La1.2.BCG | None | SRR7069803 | Other | La1.2.BCG | None | SRR29053151 | HR-TB | La1.2.BCG | None | SRR5485728 | Other | La1.2.BCG | None | SRR6046018 | Other | La1.2.BCG | None | SRR7069945 | HR-TB | La1.2.BCG | None | SRR7086713 | HR-TB | La1.2.BCG | None | SRR9596060 | HR-TB | La1.2.BCG | None | SRR29356648 | HR-TB | La1.2.BCG | None | SRR16089905 | HR-TB | La1.2.BCG | None | SRR29053554 | HR-TB | La1.2.BCG | None | ERR11068638 | HR-TB | La1.2.BCG | None | SRR29053501 | HR-TB | La1.2.BCG | None | SRR28868363 | HR-TB | La1.2.BCG | None | SRR28859795 | HR-TB | La1.2.BCG | None | SRR13180304 | Other | La1.2.BCG | None | SRR6045637 | Other | La1.2.BCG | None | ERR766246 | Other | La1.2.BCG | None | ERR4821698 | Other | La1.2.BCG | None | ERR766226 | Other | La1.2.BCG | None | SRR29356637 | HR-TB | La1.2.BCG | None | ERR13285482 | HR-TB | La1.2.BCG | None | SRR27450158 | Other | La1.2.BCG | None | SRR8886988 | Other | La1.2.BCG | None | SRR29341496 | HR-TB | La1.2.BCG | None | ERR13292407 | HR-TB | La1.2.BCG | None | ERR13292272 | HR-TB | La1.2.BCG | None | ERR766257 | HR-TB | La1.2.BCG | None | ERR13285494 | HR-TB | La1.2.BCG | None | SRR16058141 | HR-TB | La1.2.BCG | None | ERR766270 | Other | La1.2.BCG | None | SRR29053494 | HR-TB | La1.2.BCG | None | SRR28868774 | HR-TB | La1.2.BCG | None | ERR11068388 | Other | La1.2.BCG | None | SRR1166866 | Other | La1.2.BCG | None | ERR13291916 | HR-TB | La1.2.BCG | None | SRR7086711 | HR-TB | La1.2.BCG | None | SRR9596063 | Other | La1.2.BCG | None | SRR7221299 | HR-TB | La1.2.BCG | None | SRR7070034 | Other | La1.2.BCG | None | SRR28859748 | HR-TB | La1.2.BCG | None | ERR11044379 | HR-TB | La1.2.BCG | None | SRR16058264 | HR-TB | La1.2.BCG | None | SRR27450601 | HR-TB | La1.2.BCG | None | SRR27450620 | HR-TB | La1.2.BCG | None | ERR9125581 | HR-TB | La1.2.BCG | None | ERR4821440 | HR-TB | La1.2.BCG | None | SRR28859744 | HR-TB | La1.2.BCG | None | SRR28858511 | HR-TB | La1.2.BCG | None | SRR8102332 | HR-TB | La1.2.BCG | None | ERR13285634 | HR-TB | La1.2.BCG | None | ERR13285653 | HR-TB | La1.2.BCG | None | SRR15676439 | HR-TB | La1.2.BCG | None | SRR13180318 | Other | La1.2.BCG | None | SRR27450605 | HR-TB | La1.2.BCG | None | SRR29056296 | HR-TB | La1.2.BCG | None | SRR9596069 | RR-TB | La1.2.BCG | None | SRR7070076 | Other | La1.2.BCG | None | SRR29053411 | HR-TB | La1.2.BCG | None | SAMN02414848 | HR-TB | La1.2.BCG | se | SRR7221303 | Other | La1.2.BCG | None | ERR13291985 | HR-TB | La1.2.BCG | None | SRR14782465 | Other | La1.2.BCG | None | SRR1167144 | HR-TB | La1.2.BCG | None | SRR13399335 | HR-TB | La1.2.BCG | None | SRR27450603 | HR-TB | La1.2.BCG | None | ERR13291374 | HR-TB | La1.2.BCG | None | SRR9596061 | HR-TB | La1.2.BCG | None | SRR29053624 | HR-TB | La1.2.BCG | None | SRR7070062 | MDR-TB | La1.2.BCG | None | SRR29050624 | HR-TB | La1.2.BCG | None | ERR2514832 | HR-TB | La1.2.BCG | None | SRR14782268 | Other | La1.2.BCG | None | ERR766248 | Other | La1.2.BCG | None | ERR400388 | HR-TB | La1.2.BCG | None | SRR7069581 | Other | La1.2.BCG | None | ERR4195591 | HR-TB | La1.2.BCG | None | ERR4819451 | HR-TB | La1.2.BCG | None | ERR4821547 | Other | La1.2.BCG | None | ERR766260 | Other | La1.2.BCG | None | SRR16100722 | HR-TB | La1.2.BCG | None | SRR28409343 | Other | La1.2.BCG | None | ERR4820009 | Other | La1.2.BCG | gb | ERR4818051 | HR-TB | La1.2.BCG | None | SRR17592387 | HR-TB | La1.2.BCG | None | ERR11050992 | HR-TB | La1.2.BCG | None | ERR11044748 | HR-TB | La1.2.BCG | None | SRR13399333 | HR-TB | La1.2.BCG | None | ERR11067586 | HR-TB | La1.2.BCG | None | SRR7070164 | HR-TB | La1.2.BCG | None | ERR11050679 | HR-TB | La1.2.BCG | None | ERR4819463 | HR-TB | La1.2.BCG | None | SRR28858615 | HR-TB | La1.2.BCG | None | SRR27450272 | HR-TB | La1.2.BCG | None | ERR13285525 | HR-TB | La1.2.BCG | None | ERR766217 | HR-TB | La1.2.BCG | None | ERR766239 | HR-TB | La1.2.BCG | None | ERR766256 | HR-TB | La1.2.BCG | None | ERR766261 | HR-TB | La1.2.BCG | None | ERR4816090 | HR-TB | La1.2.BCG | None | ERR4822113 | HR-TB | La1.2.BCG | None | SRR9596062 | HR-TB | La1.2.BCG | None | SRR28868737 | HR-TB | La1.2.BCG | None | SRR13399341 | HR-TB | La1.2.BCG | None | SRR28409494 | HR-TB | La1.2.BCG | None | SRR17592386 | HR-TB | La1.2.BCG | None | SRR13180347 | Other | La1.2.BCG | None | SRR27450621 | Other | La1.2.BCG | None | SRR6045990 | HR-TB | La1.2.BCG | None | SRR10232121 | Other | La1.2.BCG | None | SRR13180244 | HR-TB | La1.2.BCG | None | SRR9596070 | Other | La1.2.BCG | None | SRR13399336 | Other | La1.2.BCG | None | SRR7070400 | HR-TB | La1.2.BCG | None | ERR4816886 | Other | La1.2.BCG | None | ERR4818639 | HR-TB | La1.2.BCG | None | ERR11067938 | HR-TB | La1.2.BCG | None | ERR11067380 | Other | La1.2.BCG | None | SRR27450379 | Other | La1.2.BCG | None | SRR16089681 | Other | La1.2.BCG | None | ERR766245 | Other | La1.2.BCG | None | SRR14801882 | Other | La1.2.BCG | None | SRR13399332 | HR-TB | La1.2.BCG | None | SRR14782719 | HR-TB | La1.2.BCG | None | SRR15676435 | Other | La1.2.BCG | None | ERR387001 | Other | La1.2.BCG | None | SRR7086718 | HR-TB | La1.2.BCG | None | ERR4820780 | MDR-TB | La1.2.BCG | gb | ERR11050474 | HR-TB | La1.2.BCG | None | ERR11067503 | HR-TB | La1.2.BCG | None | ERR11068110 | HR-TB | La1.2.BCG | None | SRR9596064 | HR-TB | La1.2.BCG | None | SRR7086717 | Other | La1.2.BCG | None | ERR766221 | HR-TB | La1.2.BCG | None | ERR766240 | HR-TB | La1.2.BCG | None | ERR13285663 | HR-TB | La1.2.BCG | None | ERR13291192 | HR-TB | La1.2.BCG | None | ERR11044175 | Other | La1.2.BCG | None | ERR9125787 | Other | La1.2.BCG | None | SRR7070247 | HR-TB | La1.2.BCG | None | SRR29055492 | HR-TB | La1.2.BCG | None | SRR14781940 | Other | La1.2.BCG | None | SRR16058167 | Other | La1.2.BCG | None | ERR4821117 | Other | La1.2.BCG | None | SRR28868584 | HR-TB | La1.2.BCG | None | SRR7221302 | HR-TB | La1.2.BCG | None | ERR13285578 | HR-TB | La1.2.BCG | None | SRR29053082 | HR-TB | La1.2.BCG | None | SRR29052893 | HR-TB | La1.2.BCG | None | SRR13180234 | HR-TB | La1.2.BCG | None | SRR13180278 | HR-TB | La1.2.BCG | None | ERR9125703 | HR-TB | La1.2.BCG | None | SRR28868899 | HR-TB | La1.2.BCG | None | SRR29051177 | HR-TB | La1.2.BCG | None | SRR13399340 | HR-TB | La1.2.BCG | None | SRR29052999 | HR-TB | La1.2.BCG | None | ERR11043503 | Other | La1.2.BCG | None | SRR1915478 | Other | La1.2.BCG | None | SRR1735567 | Other | La1.2.BCG | None | ERR4821255 | Other | La1.2.BCG | None | ERR11049842 | Other | La1.2.BCG | None | SRR29053016 | HR-TB | La1.2.BCG | None | SRR13180373 | HR-TB | La1.2.BCG | None | SRR29341494 | HR-TB | La1.2.BCG | None | ERR9899661 | Other | La1.2.BCG | None | SRR10997355 | HR-TB | La1.2.BCG | None | SRR17592375 | HR-TB | La1.2.BCG | None | ERR4817646 | Other | La1.2.BCG | None | SRR6046156 | HR-TB | La1.2.BCG | None | SRR29356616 | HR-TB | La1.2.BCG | None | SRR10997357 | HR-TB | La1.2.BCG | None | SRR7086712 | HR-TB | La1.2.BCG | None | SRR18911229 | Other | La1.2.BCG | None | SRR1735707 | HR-TB | La1.2.BCG | None | ERR757417 | HR-TB | La1.2.BCG | None | ERR766214 | HR-TB | La1.2.BCG | None | SRR27450273 | HR-TB | La1.2.BCG | None | SRR28409549 | HR-TB | La1.2.BCG | None | SRR14782003 | Other | La1.2.BCG | None | SRR27450474 | Other | La1.2.BCG | None | SRR28409495 | HR-TB | La1.2.BCG | None | SRR7069083 | Other | La1.2.BCG | None | ERR13285488 | HR-TB | La1.2.BCG | None | SRR29055405 | HR-TB | La1.2.BCG | None | SRR1162747 | HR-TB | La1.2.BCG | None | ERR551427 | HR-TB | La1.2.BCG | None | SRR17592380 | HR-TB | La1.2.BCG | None | ERR4821748 | Other | La1.2.BCG | None | SRR29055396 | HR-TB | La1.2.BCG | None | ERR9121663 | HR-TB | La1.2.BCG | None | ERR766263 | Other | La1.2.BCG | None | SRR29055424 | HR-TB | La1.2.BCG | None | SRR7069887 | Other | La1.2.BCG | None | SRR28858729 | HR-TB | La1.2.BCG | None | SRR29053365 | HR-TB | La1.2.BCG | None | ERR13285408 | HR-TB | La1.2.BCG | None | SRR1915485 | Other | La1.2.BCG | None | SRR28868612 | HR-TB | La1.2.BCG | None | SRR8234778 | HR-TB | La1.2.BCG | None | SRR18897169 | Other | La1.2.BCG | None | SRR14802224 | Other | La1.2.BCG | None | SRR9596056 | MDR-TB | La1.2.BCG | None | SRR28868704 | HR-TB | La1.2.BCG | None | SRR14802226 | Other | La1.2.BCG | None | SRR7221300 | HR-TB | La1.2.BCG | None | ERR228166 | HR-TB | La1.2.BCG | None | ERR11049744 | HR-TB | La1.2.BCG | None | SRR6046614 | Other | La1.2.BCG | None | SRR14782351 | HR-TB | La1.2.BCG | None | SRR28046229 | Other | La1.2.BCG | None | SRR27450425 | HR-TB | La1.2.BCG | None | SRR28409452 | HR-TB | La1.2.BCG | None | ERR11049843 | HR-TB | La1.2.BCG | None | ERR212052 | HR-TB | La1.2.BCG | mw | SRR10997354 | HR-TB | La1.2.BCG | None | SRR13399338 | HR-TB | La1.2.BCG | None | ERR11049787 | HR-TB | La1.2.BCG | None | ERR4818908 | HR-TB | La1.2.BCG | None | SRR18897163 | HR-TB | La1.2.BCG | None | SRR7221304 | HR-TB | La1.2.BCG | None | ERR4816055 | HR-TB | La1.2.BCG | None | ERR9811808 | HR-TB | La1.2.BCG | None | SRR15676436 | HR-TB | La1.2.BCG | None | SRR6045068 | HR-TB | La1.2.BCG | None | SRR14781838 | HR-TB | La1.2.BCG | None | SRR17592384 | HR-TB | La1.2.BCG | None | SRR7069678 | MDR-TB | La1.2.BCG | None | ERR4814591 | HR-TB | La1.2.BCG | None | SRR28409394 | HR-TB | La1.2.BCG | None | SRR13399330 | HR-TB | La1.2.BCG | None | SRR7069317 | HR-TB | La1.2.BCG | None | ERR11049331 | HR-TB | La1.2.BCG | None | SRR17592381 | HR-TB | La1.2.BCG | None | SRR17592385 | HR-TB | La1.2.BCG | None | ERR13291673 | HR-TB | La1.2.BCG | None | ERR766262 | HR-TB | La1.2.BCG | None | SRR15676437 | HR-TB | La1.2.BCG | None | ERR4822100 | Other | La1.2.BCG | None | SRR7069801 | HR-TB | La1.2.BCG | None | SRR13180379 | Other | La1.2.BCG | None | SRR13767788 | HR-TB | La1.2.BCG | None | SRR27450472 | HR-TB | La1.2.BCG | None | ERR766215 | Other | La1.2.BCG | None | SRR7070364 | HR-TB | La1.2.BCG | None | SRR14782713 | Other | La1.2.BCG | None | SRR7070225 | Other | La1.2.BCG | None | ERR766242 | Other | La1.2.BCG | None | SRR28409508 | HR-TB | La1.2.BCG | None | ERR4817396 | RR-TB | La1.2.BCG | None | SRR17592369 | HR-TB | La1.2.BCG | None | SRR9596058 | Other | La1.2.BCG | None | ERR9125558 | Other | La1.2.BCG | None | SRR7221301 | HR-TB | La1.2.BCG | None | SRR7086715 | HR-TB | La1.2.BCG | None | SRR7496578 | Other | La1.2.BCG | None | SRR5875882 | Other | La1.2.BCG | None | ERR2815610 | Other | La1.2.BCG | None | SRR16058482 | Other | La1.2.BCG | None | ERR11049026 | HR-TB | La1.2.BCG | None | SRR13180338 | HR-TB | La1.2.BCG | None | SRR29052895 | HR-TB | La1.2.BCG | None | ERR11067543 | HR-TB | La1.2.BCG | None | SRR15676433 | HR-TB | La1.2.BCG | None | SRR29053030 | HR-TB | La1.2.BCG | None | SRR7070098 | Other | La1.2.BCG | None | SRR13180287 | Other | La1.2.BCG | None | ERR13291941 | HR-TB | La1.2.BCG | None | SRR1915483 | HR-TB | La1.2.BCG | None | SRR17592368 | Other | La1.2.BCG | None | SRR7070360 | HR-TB | La1.2.BCG | None | SRR28868566 | HR-TB | La1.2.BCG | None | ERR4814840 | HR-TB | La1.2.BCG | None | SRR29055741 | HR-TB | La1.2.BCG | None | SRR13399342 | HR-TB | La1.2.BCG | None | SRR9596059 | HR-TB | La1.2.BCG | None | SRR28868376 | HR-TB | La1.2.BCG | None | SRR29052793 | HR-TB | La1.2.BCG | None | SRR28858407 | HR-TB | La1.2.BCG | None | ERR13285622 | HR-TB | La1.2.BCG | None | ERR9125888 | Other | La1.2.BCG | None | SRR9596057 | Other | La1.2.BCG | None | ERR766243 | HR-TB | La1.2.BCG | None | SRR7070115 | HR-TB | La1.2.BCG | None | SRR7086714 | HR-TB | La1.2.BCG | None | SRR17592378 | Other | La1.2.BCG | None | SRR14782824 | Other | La1.2.BCG | None | SRR16097556 | HR-TB | La1.2.BCG | None | SRR8234774 | HR-TB | La1.2.BCG | None | SRR7069456 | HR-TB | La1.2.BCG | None | SRR29356836 | HR-TB | La1.2.BCG | None | SRR29341497 | HR-TB | La1.2.BCG | None | SRR28858666 | HR-TB | La1.2.BCG | None | ERR234151 | HR-TB | La1.2.BCG | None | ERR766241 | Other | La1.2.BCG | None | ERR13285675 | HR-TB | La1.2.BCG | None | SRR28409351 | HR-TB | La1.2.BCG | None | SRR10997356 | Other | La1.2.BCG | None | SRR1915484 | Other | La1.2.BCG | None | SRR28858692 | HR-TB | La1.2.BCG | None | ERR5102809 | HR-TB | La1.2.BCG | None | ERR766238 | Other | La1.2.BCG | None | ERR9125853 | Other | La1.2.BCG | None | SRR29356837 | HR-TB | La1.2.BCG | None | SRR28858473 | HR-TB | La1.2.BCG | None | SRR21878054 | HR-TB | La1.2.BCG | None | SRR17592383 | HR-TB | La1.2.BCG | None | ERR13285585 | HR-TB | La1.2.BCG | None | SRR29053000 | HR-TB | La1.2.BCG | None | SRR16089408 | HR-TB | La1.2.BCG | None | SRR16089543 | Other | La1.2.BCG | None | SRR13399331 | Other | La1.2.BCG | None | ERR13292155 | HR-TB | La1.2.BCG | None | ERR11049655 | Other | La1.2.BCG | None | SRR1165461 | HR-TB | La1.2.BCG | None | SRR7983754 | HR-TB | La1.2.BCG | None | ERR11049622 | Other | La1.2.BCG | None | SRR10232122 | HR-TB | La1.2.BCG | None | ERR2815602 | Other | La1.2.BCG | None | SRR13180228 | HR-TB | La1.2.BCG | None | ERR11050420 | HR-TB | La1.2.BCG | None | ERR11067742 | HR-TB | La1.2.BCG | None | SRR27450608 | Other | La1.2.BCG | None | SRR27450170 | HR-TB | La1.2.BCG | None | SRR1915487 | Other | La1.2.BCG | None | SRR29055376 | HR-TB | La1.2.BCG | None | SRR13399334 | HR-TB | La1.2.BCG | None | ERR766258 | Other | La1.2.BCG | None | ERR4816052 | Other | La1.2.BCG | None | SRR28375406 | Other | La1.2.BCG | None | SRR9596066 | HR-TB | La1.2.BCG | None | SRR9596067 | HR-TB | La1.2.BCG | None | SRR28409560 | Other | La1.2.BCG | None | SRR28409558 | Other | La1.2.BCG | None | SRR7069368 | HR-TB | La1.2.BCG | None | SRR7069868 | HR-TB | La1.2.BCG | None | SRR17592379 | HR-TB | La1.2.BCG | None | SRR9596065 | HR-TB | La1.2.BCG | None | SRR7070106 | MDR-TB | La1.2.BCG | None | SRR13180348 | HR-TB | La1.2.BCG | None | SRR16089542 | HR-TB | La1.2.BCG | None | SRR29056236 | HR-TB | La1.2.BCG | None | SRR3675315 | HR-TB | La1.2.BCG | None | ERR766247 | HR-TB | La1.2.BCG | None | ERR13285620 | HR-TB | La1.2.BCG | None | SRR17592376 | HR-TB | La1.2.BCG | None | SRR17592377 | HR-TB | La1.2.BCG | None | ERR11067904 | HR-TB | La1.2.BCG | None | ERR13291325 | HR-TB | La1.2.BCG | None | ERR13285341 | HR-TB | La1.2.BCG | None | SRR17592382 | HR-TB | La1.2.BCG | None | SRR7068937 | HR-TB | La1.2.BCG | None | SRR27450471 | HR-TB | La1.2.BCG | None | SRR27450475 | HR-TB | La1.2.BCG | None | ERR766228 | Other | La1.2.BCG | None | ERR11049990 | Other | La1.2.BCG | None | SRR8668953 | Other | La1.2.BCG | None | ERR4829499 | HR-TB | La1.2.BCG | None | SRR16058128 | HR-TB | La1.2.BCG | None | SRR3647355 | Other | La1.2.BCG | None | ERR766222 | Other | La1.2.BCG | None | SRR28859875 | HR-TB | La1.2.BCG | None | ERR766259 | Other | La1.2.BCG | None | SRR10379919 | HR-TB | La1.2.BCG | None | SRR21878053 | Other | La1.2.BCG | None | ERR13285681 | HR-TB | La1.2.BCG | None | SRR27450271 | Other | La1.2.BCG | None | SRR16058186 | Other | La1.2.BCG | None | ERR4820706 | HR-TB | La1.2.BCG | None | SRR9596068 | HR-TB | La1.2.BCG | None | ERR766218 | HR-TB | La1.2.BCG | None | ERR766223 | HR-TB | La1.2.BCG | None | SRR1915486 | HR-TB | La1.2.BCG | None | SRR13180255 | HR-TB | La1.2.BCG | None | ERR1035141 | HR-TB | La1.2.BCG | sa | SRR7069775 | HR-TB | La1.2.BCG | None | SRR7069799 | HR-TB | La1.2.BCG | None | SRR7086716 | HR-TB | La1.2.BCG | None | SRR29052828 | HR-TB | La1.2.BCG | None | SRR8886989 | HR-TB | La1.2.BCG | None | SRR16278275 | Other | La1.2.BCG | None | ERR766244 | HR-TB | La1.2.BCG | None |
|---|
