Rv1979c - p.Ala222Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
2 Sensitive
0 RR-TB
60 HR-TB
30 MDR-TB
35 Pre-XDR-TB
4 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 127 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.2.1;lineage4.3.3 | 1 |
| lineage4.1.2.1;lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 131 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28393441 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4811854 | MDR-TB | lineage4.1.2.1 | pe | ERR4811743 | HR-TB | lineage4.1.2.1 | pe | ERR2184253 | MDR-TB | lineage4.1.2.1 | pe | ERR2184528 | HR-TB | lineage4.1.2.1 | pe | ERR2184494 | HR-TB | lineage4.1.2.1 | pe | SRR16058290 | Sensitive | lineage1.2.1.2.1 | None | SRR10808409 | HR-TB | lineage4.1.2.1 | None | ERR4423707 | HR-TB | lineage4.1.2.1 | None | ERR4813096 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813557 | HR-TB | lineage4.1.2.1 | None | ERR4813635 | HR-TB | lineage4.1.2.1 | None | SRR3732591 | MDR-TB | lineage4.1.2.1 | None | ERR12118021 | MDR-TB | lineage4.1.2.1 | None | SRR10808626 | MDR-TB | lineage4.1.2.1 | None | ERR13260689 | HR-TB | lineage4.1.2.1 | None | ERR13260666 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR6879045 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9029869 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10808391 | MDR-TB | lineage4.1.2.1 | None | ERR4813117 | XDR-TB | lineage4.1.2.1 | None | ERR13260294 | HR-TB | lineage4.1.2.1 | None | ERR3287871 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2184236 | HR-TB | lineage4.1.2.1 | pe | ERR2184472 | MDR-TB | lineage4.1.2.1 | pe | ERR6866799 | MDR-TB | lineage4.1.2.1 | None | ERR3287419 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3287479 | HR-TB | lineage4.1.2.1 | pe | SRR22461664 | HR-TB | lineage4.1.2.1 | None | ERR3287547 | HR-TB | lineage4.1.2.1 | None | SRR28394124 | HR-TB | lineage4.1.2.1 | None | ERR4812943 | HR-TB | lineage4.1.2.1 | pe | ERR4812927 | HR-TB | lineage4.1.2.1 | pe | ERR4812952 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813387 | MDR-TB | lineage4.1.2.1 | pe | SRR28394086 | HR-TB | lineage4.1.2.1 | None | ERR4811906 | HR-TB | lineage4.1.2.1 | pe | ERR4813205 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR775333 | HR-TB | lineage4.1.2.1 | pe | ERR4812360 | HR-TB | lineage4.1.2.1 | pe | ERR751364 | HR-TB | lineage4.1.2.1 | pe | ERR751479 | HR-TB | lineage4.1.2.1 | pe | ERR4812869 | MDR-TB | lineage4.1.2.1 | None | ERR4812926 | HR-TB | lineage4.1.2.1 | pe | ERR4813104 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4813126 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813200 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10808514 | HR-TB | lineage4.1.2.1 | None | ERR2516623 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2516431 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2516738 | XDR-TB | lineage4.1.2.1 | pe | ERR4813124 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR28393546 | MDR-TB | lineage4.1.2.1 | None | ERR4813717 | MDR-TB | lineage4.1.2.1 | None | SRR10808353 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813133 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813625 | HR-TB | lineage4.1.2.1 | None | ERR3287711 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR10808369 | MDR-TB | lineage4.1.2.1 | None | SRR28393465 | MDR-TB | lineage4.1.2.1 | None | ERR4811881 | HR-TB | lineage4.1.2.1 | pe | SRR10808476 | HR-TB | lineage4.1.2.1 | None | ERR9125304 | Sensitive | lineage1.2.1.2.1 | None | ERR4423718 | MDR-TB | lineage4.1.2.1 | None | ERR4813177 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13260410 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR22461681 | HR-TB | lineage4.1.2.1 | None | ERR12117972 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2184273 | MDR-TB | lineage4.1.2.1 | None | SRR28393699 | HR-TB | lineage4.1.2.1 | None | SAMEA5569904 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13870385 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2184286 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR28859723 | HR-TB | lineage4.1.2.1 | None | ERR4812220 | HR-TB | lineage4.1.2.1 | pe | SRR15217982 | HR-TB | lineage4.1.2.1 | None | ERR3287375 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3287585 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3287862 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3287820 | XDR-TB | lineage4.1.2.1 | pe | ERR775334 | HR-TB | lineage4.1.2.1 | pe | SRR28393433 | MDR-TB | lineage4.1.2.1 | None | ERR4813430 | HR-TB | lineage4.1.2.1 | pe | SRR22461594 | HR-TB | lineage4.1.2.1 | None | SRR28393695 | MDR-TB | lineage4.1.2.1 | None | SRR22461587 | HR-TB | lineage4.1.2.1 | None | ERR4812446 | HR-TB | lineage4.1.2.1 | pe | SRR28393362 | MDR-TB | lineage4.1.2.1 | None | SRR28394156 | HR-TB | lineage4.1.2.1 | None | SRR22461657 | HR-TB | lineage4.1.2.1 | None | SRR22461638 | HR-TB | lineage4.1.2.1 | None | SRR22461673 | HR-TB | lineage4.1.2.1 | None | ERR4813132 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13870413 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813378 | MDR-TB | lineage4.1.2.1 | pe | ERR4813176 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813095 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13870394 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13260202 | MDR-TB | lineage4.1.2.1 | None | ERR13260422 | MDR-TB | lineage4.1.2.1 | None | ERR13260523 | MDR-TB | lineage4.1.2.1 | None | ERR6866809 | HR-TB | lineage4.1.2.1 | None | SRR10808539 | MDR-TB | lineage4.1.2.1 | None | ERR13260140 | HR-TB | lineage4.1.2.1 | None | ERR13260101 | MDR-TB | lineage4.1.2.1 | None | ERR13260290 | HR-TB | lineage4.1.2.1 | None | SRR13870372 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR22461666 | HR-TB | lineage4.1.2.1;lineage4.3.3 | None | ERR2184393 | MDR-TB | lineage4.1.2.1 | pe | ERR3287450 | MDR-TB | lineage4.1.2.1 | pe | ERR3287674 | HR-TB | lineage4.1.2.1 | pe | SRR28394228 | MDR-TB | lineage4.1.2.1 | None | ERR4812769 | HR-TB | lineage4.1.2.1;lineage4.3.2 | pe | ERR751391 | HR-TB | lineage4.1.2.1 | pe | SRR28393788 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813077 | HR-TB | lineage4.1.2.1 | pe | ERR4812102 | HR-TB | lineage4.1.2.1 | None | ERR751532 | HR-TB | lineage4.1.2.1 | pe | ERR4812386 | HR-TB | lineage4.1.2.1 | pe | ERR4812441 | HR-TB | lineage4.1.2.1 | pe | ERR779866 | HR-TB | lineage4.1.2.1 | pe | ERR775376 | MDR-TB | lineage4.1.2.1 | pe | SRR16915756 | HR-TB | lineage4.1.2.1 | None | ERR2510209 | HR-TB | lineage4.1.2.1 | pe | ERR2510149 | HR-TB | lineage4.1.2.1 | pe | ERR2510236 | HR-TB | lineage4.1.2.1 | pe | ERR2510161 | HR-TB | lineage4.1.2.1 | pe | ERR1034731 | HR-TB | lineage4.1.2.1 | pe | ERR1034789 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR7517809 | MDR-TB | lineage4.1.2.1 | pe | ERR4813202 | XDR-TB | lineage4.1.2.1 | None |
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