Rv2043c - c.390_391dupGG

Drug resistance types
0 Sensitive 3 RR-TB 9 HR-TB 198 MDR-TB 153 Pre-XDR-TB 4 XDR-TB 0 Other
lineage Counts
lineage Count
lineage4.8 18
lineage4.3.3 18
lineage4.2.1 8
lineage4.4.1.1 14
lineage2.2.1 187
lineage2.2.1.2 1
lineage4.3.4.2 4
lineage5 1
lineage4.9 4
lineage3.1 4
lineage1.1.3.1 1
lineage2.2.1.1 12
lineage4.1.1.3 9
lineage2.2.1;lineage1.2.2.2 1
lineage1.1.2 2
lineage3 28
lineage4.2.1.1 4
lineage3.1.2 8
lineage4.3 1
lineage4.6.2.2 3
lineage4.3.3;lineage4.1.2.1 1
lineage4 3
lineage2.2.2 6
lineage4.1 3
lineage4.8;lineage4.2.1 1
lineage2.1 1
lineage3;lineage2.2.1;lineage1.1.3.3 1
lineage1.1.3.3 1
lineage4.1.2.1 4
lineage3;lineage2.2.1 3
lineage1.2.2.2 3
lineage4.4.2 2
lineage4.3.4.1 2
lineage4.6.1.2 1
lineage4.6.2.2;lineage2.2.1.1 1
lineage4.2.2.2 1
lineage4.8;lineage4.1.2.1 1
lineage4;lineage2 1
lineage4.1.2 1
lineage3.1.1 1
spoligotype Counts
spoligotype Count
None 367
Geographic prevalence
Country level data for this variant is available for 104 isolates.
Statisctical support
Not enough data to calculate support.
ID Drug resistance Lineage Country iso2
ERR072082 MDR-TB lineage4.8 None
ERR12118056 Pre-XDR-TB lineage4.3.3 None
ERR10762255 Pre-XDR-TB lineage4.2.1 None
ERR11488613 MDR-TB lineage4.4.1.1 None
ERR10465872 Pre-XDR-TB lineage2.2.1 None
ERR11044180 XDR-TB lineage2.2.1 None
ERR4276874 Pre-XDR-TB lineage2.2.1 None
ERR3273194 Pre-XDR-TB lineage2.2.1.2 None
ERR3639699 MDR-TB lineage2.2.1 None
ERR4025017 MDR-TB lineage4.3.3 None
ERR3838815 MDR-TB lineage4.3.4.2 None
ERR4195372 MDR-TB lineage5 None
ERR4553866 Pre-XDR-TB lineage4.8 None
ERR4553619 MDR-TB lineage4.8 None
ERR4553650 Pre-XDR-TB lineage4.9 None
ERR4553668 Pre-XDR-TB lineage4.9 None
ERR4553637 Pre-XDR-TB lineage4.9 None
ERR4553754 MDR-TB None
ERR4553880 Pre-XDR-TB lineage4.8 None
ERR4553976 Pre-XDR-TB lineage3.1 None
ERR4553881 MDR-TB lineage1.1.3.1 None
ERR4830401 MDR-TB lineage2.2.1.1 vn
ERR2515640 Pre-XDR-TB lineage4.1.1.3 za
ERR4830284 HR-TB lineage2.2.1 vn
ERR8665906 Pre-XDR-TB lineage2.2.1 None
ERR4799551 Pre-XDR-TB lineage3.1 None
ERR4799902 MDR-TB lineage2.2.1;lineage1.2.2.2 None
ERR4831464 Pre-XDR-TB lineage1.1.2 None
ERR4800099 MDR-TB lineage3 None
ERR8665907 Pre-XDR-TB lineage2.2.1 None
ERR8665822 Pre-XDR-TB lineage2.2.1 None
ERR4831465 Pre-XDR-TB lineage4.8 None
ERR4831439 Pre-XDR-TB lineage3 None
ERR4831641 MDR-TB lineage2.2.1 vn
ERR8665993 MDR-TB lineage2.2.1 None
ERR4831613 Pre-XDR-TB lineage2.2.1.1 vn
ERR5864988 Pre-XDR-TB lineage2.2.1 None
ERR8665838 Pre-XDR-TB lineage2.2.1 None
ERR8665610 Pre-XDR-TB lineage2.2.1 None
ERR067586 HR-TB lineage2.2.1 ru
ERR5864368 MDR-TB lineage2.2.1 None
ERR5864369 MDR-TB lineage2.2.1 None
ERR5864994 MDR-TB lineage2.2.1 None
ERR5864991 MDR-TB lineage2.2.1 None
ERR5864992 MDR-TB lineage2.2.1 None
ERR5864993 MDR-TB lineage2.2.1 None
ERR5864997 Pre-XDR-TB lineage2.2.1 None
ERR5864989 Pre-XDR-TB lineage2.2.1 None
ERR5864996 Pre-XDR-TB lineage2.2.1 None
ERR5864990 MDR-TB lineage2.2.1 None
ERR5864995 MDR-TB lineage2.2.1 None
ERR5865640 MDR-TB lineage4.3.3 None
ERR5865124 MDR-TB lineage4.3.3 None
ERR5865876 Pre-XDR-TB lineage2.2.1 None
ERR5865721 MDR-TB lineage2.2.1 None
ERR5865722 MDR-TB lineage2.2.1 None
ERR5865877 Pre-XDR-TB lineage2.2.1 None
ERR5865853 Pre-XDR-TB lineage2.2.1 None
ERR5865854 Pre-XDR-TB lineage2.2.1 None
ERR5866015 MDR-TB lineage4.2.1.1 None
ERR5866238 MDR-TB lineage2.2.1 None
ERR5866014 MDR-TB lineage4.2.1.1 None
ERR5897087 Pre-XDR-TB lineage3 None
ERR5866239 MDR-TB lineage2.2.1 None
ERR5866240 MDR-TB lineage2.2.1 None
ERR5866586 MDR-TB lineage2.2.1 None
ERR5866587 MDR-TB lineage2.2.1 None
ERR5897080 Pre-XDR-TB lineage3 None
ERR688034 Pre-XDR-TB lineage3.1.2 None
ERR688018 Pre-XDR-TB lineage3.1.2 None
ERR6662372 MDR-TB lineage2.2.1 None
ERR6865398 MDR-TB lineage4.3.3 None
ERR688013 Pre-XDR-TB lineage3.1.2 None
ERR688032 Pre-XDR-TB lineage3 None
ERR688026 MDR-TB lineage3 None
SRR26937068 MDR-TB lineage2.2.1 None
SRR16088543 XDR-TB lineage2.2.1 None
SRR26936983 MDR-TB lineage2.2.1 None
ERR7737775 MDR-TB lineage2.2.1 None
ERR7737713 MDR-TB lineage2.2.1 None
ERR7737760 MDR-TB lineage2.2.1.1 None
ERR7737715 MDR-TB lineage2.2.1.1 None
SRR11662329 Pre-XDR-TB lineage2.2.1 None
ERR7911133 MDR-TB lineage2.2.1 None
ERR8665552 Pre-XDR-TB lineage2.2.1 None
ERR8665504 Pre-XDR-TB lineage2.2.1 None
ERR8665503 Pre-XDR-TB lineage2.2.1 None
ERR8665634 Pre-XDR-TB lineage2.2.1 None
ERR8665551 Pre-XDR-TB lineage2.2.1 None
ERR8665633 Pre-XDR-TB lineage2.2.1 None
ERR8665651 MDR-TB lineage2.2.1 None
ERR8665690 Pre-XDR-TB lineage2.2.1 None
ERR8665652 MDR-TB lineage2.2.1 None
ERR8665691 Pre-XDR-TB lineage2.2.1 None
ERR8774578 MDR-TB lineage2.2.1 None
SRR25534517 Pre-XDR-TB lineage2.2.1 None
ERR8665839 MDR-TB lineage2.2.1 None
ERR11050020 MDR-TB lineage4.2.1.1 None
ERR8773892 MDR-TB lineage4.3 None
ERR8774357 Pre-XDR-TB lineage2.2.1 None
SRR16087947 MDR-TB lineage4.3.3 None
ERR9907698 MDR-TB lineage4.3.4.2 None
ERR9119279 HR-TB lineage2.2.1 None
ERR9119422 MDR-TB lineage2.2.1.1 None
ERR9119584 MDR-TB lineage4.6.2.2 None
ERR9027230 MDR-TB lineage4.3.3;lineage4.1.2.1 None
ERR9993245 MDR-TB lineage2.2.1 None
ERR9993026 Pre-XDR-TB lineage3 None
ERR9993075 Pre-XDR-TB lineage2.2.1 None
ERR9993100 Pre-XDR-TB lineage3 None
ERR9993114 Pre-XDR-TB lineage4.1.1.3 None
SRR10380020 Pre-XDR-TB lineage2.2.1 None
SRR10397185 Pre-XDR-TB lineage2.2.1 None
SRR1049629 MDR-TB lineage4.4.1.1 None
SRR1103591 MDR-TB lineage4 None
SRR1049623 MDR-TB lineage4.4.1.1 None
SRR1062902 MDR-TB lineage4.4.1.1 None
SRR1049622 MDR-TB lineage4.4.1.1 None
SRR1049630 MDR-TB lineage4.4.1.1 None
SRR10500315 Pre-XDR-TB lineage1.1.2 None
SRR1062897 MDR-TB lineage4.4.1.1 None
SRR1159338 MDR-TB lineage2.2.1 None
SRR1140729 MDR-TB lineage4.4.1.1 None
SRR1140751 MDR-TB lineage4.4.1.1 None
SRR1159204 MDR-TB lineage2.2.1 None
SRR1159369 MDR-TB lineage2.2.1 None
SRR11567813 Pre-XDR-TB lineage2.2.2 None
SRR1158890 MDR-TB lineage2.2.1 None
SRR1159175 MDR-TB lineage2.2.1 None
SRR1162691 MDR-TB lineage4.1 None
SRR1162504 MDR-TB lineage2.2.1 None
SRR1163037 MDR-TB lineage2.2.1 None
SRR1162971 Pre-XDR-TB lineage2.2.1 None
SRR1163031 MDR-TB lineage2.2.1 None
SRR1162481 MDR-TB lineage4.1 None
SRR1163219 MDR-TB lineage2.2.1 None
SRR1163303 MDR-TB lineage2.2.1 None
SRR1165394 MDR-TB lineage2.2.1 None
SRR11638839 Pre-XDR-TB lineage3 None
SRR1180958 MDR-TB lineage2.2.1 None
SRR1166916 Pre-XDR-TB lineage2.2.1 None
SRR1172345 MDR-TB lineage2.2.1 None
SRR1166181 MDR-TB lineage4 None
SRR1169063 Pre-XDR-TB lineage2.2.1 None
SRR1169113 MDR-TB lineage2.2.1 None
SRR1172250 Pre-XDR-TB lineage2.2.1 None
SRR1181157 MDR-TB lineage2.2.1 None
SRR1181125 MDR-TB lineage2.2.1 None
SRR1181151 MDR-TB lineage2.2.1 None
SRR1181158 MDR-TB lineage2.2.1 None
SRR1184039 MDR-TB lineage2.2.1 None
SRR12142420 MDR-TB lineage2.2.2 None
SRR11972450 MDR-TB lineage2.2.1 None
SRR12142426 MDR-TB lineage2.2.2 None
SRR13232488 Pre-XDR-TB lineage2.2.1 None
SRR12142427 MDR-TB lineage2.2.2 None
SRR13232567 Pre-XDR-TB lineage2.2.1 None
SRR13232489 Pre-XDR-TB lineage2.2.1 None
SRR13232491 Pre-XDR-TB lineage2.2.1 None
SRR13232570 Pre-XDR-TB lineage2.2.1 None
SRR13232572 Pre-XDR-TB lineage2.2.1 None
SRR13232575 Pre-XDR-TB lineage2.2.1 None
SRR13423551 Pre-XDR-TB lineage2.2.1 None
SRR13232668 Pre-XDR-TB lineage2.2.1 None
SRR13232737 Pre-XDR-TB lineage2.2.1 None
SRR14782739 MDR-TB lineage2.2.1 None
SRR14088365 XDR-TB lineage3 None
SRR14270083 MDR-TB lineage2.2.1 None
SRR13423549 Pre-XDR-TB lineage2.2.1 None
SRR13423550 Pre-XDR-TB lineage2.2.1 None
SRR13449605 HR-TB lineage4.3.3 None
SRR15368758 MDR-TB lineage2.2.1 None
SRR15316388 MDR-TB lineage2.2.1 None
SRR14782762 Pre-XDR-TB lineage4.8;lineage4.2.1 None
SRR18714889 MDR-TB lineage2.2.1 None
SRR16370502 MDR-TB lineage2.2.1 None
SRR18665458 MDR-TB lineage4.1.1.3 None
SRR15368955 MDR-TB lineage2.2.1 None
SRR16370536 MDR-TB lineage2.2.1 None
SRR18002973 Pre-XDR-TB lineage2.2.1 None
SRR20632774 Pre-XDR-TB lineage2.2.1 None
SRR20632798 MDR-TB lineage2.2.1 None
SRR20632786 MDR-TB lineage2.2.1 None
SRR20969367 MDR-TB lineage2.2.1 None
SRR20969468 Pre-XDR-TB lineage2.2.1 None
SRR20969478 MDR-TB lineage2.2.1 None
SRR20969472 Pre-XDR-TB lineage2.2.1 None
SRR25827349 Pre-XDR-TB lineage2.2.1 None
SRR20969756 MDR-TB lineage2.2.1 None
SRR11828962 MDR-TB lineage2.1 None
SRR24799244 MDR-TB lineage2.2.1 None
SRR25827629 Pre-XDR-TB lineage3;lineage2.2.1;lineage1.1.3.3 None
SRR20969899 MDR-TB lineage2.2.1 None
SRR25827833 MDR-TB lineage2.2.1 None
SRR25827621 MDR-TB lineage1.1.3.3 None
SRR21276922 MDR-TB lineage2.2.1 None
SRR21277250 MDR-TB lineage2.2.1 None
ERR11081547 MDR-TB lineage4.1.2.1 None
SRR22424813 Pre-XDR-TB lineage3.1.2 None
SRR22757398 Pre-XDR-TB lineage2.2.1 None
ERR11080938 MDR-TB lineage4.1.2.1 None
ERR11068969 MDR-TB lineage2.2.1 None
ERR11083032 RR-TB lineage4.8 None
SRR25207105 MDR-TB lineage2.2.1 None
ERR9806954 Pre-XDR-TB lineage4.1.1.3 None
ERR9807036 Pre-XDR-TB lineage4.1.1.3 None
ERR8025595 Pre-XDR-TB lineage4.1.1.3 None
SRR21887688 MDR-TB lineage2.2.1 None
ERR4896323 Pre-XDR-TB lineage4.1.1.3 None
SRR22251917 MDR-TB lineage2.2.1 None
SRR24256023 MDR-TB lineage2.2.1 None
SRR24114357 HR-TB lineage3.1 None
SRR21887696 MDR-TB lineage2.2.2 None
SRR25827461 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR26399937 HR-TB lineage2.2.1 None
SRR25827458 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR24255887 MDR-TB lineage2.2.1 None
SRR24255900 MDR-TB lineage2.2.1 None
SRR26400032 MDR-TB lineage2.2.1.1 None
SRR28240002 XDR-TB lineage4.3.3 None
SRR25827407 Pre-XDR-TB lineage3;lineage2.2.1 None
ERR1352352 Pre-XDR-TB lineage2.2.1 cn
SRR25827616 Pre-XDR-TB lineage3 None
SRR23691407 MDR-TB lineage2.2.1 None
ERR1352354 Pre-XDR-TB lineage2.2.1 cn
ERR1352350 Pre-XDR-TB lineage2.2.1 cn
ERR1352358 Pre-XDR-TB lineage2.2.1 cn
ERR1352355 Pre-XDR-TB lineage2.2.1 cn
ERR1352357 Pre-XDR-TB lineage2.2.1 cn
ERR1352353 Pre-XDR-TB lineage2.2.1 cn
ERR1352351 Pre-XDR-TB lineage2.2.1 cn
ERR1034602 Pre-XDR-TB lineage3.1.2 pk
ERR1352356 Pre-XDR-TB lineage2.2.1 cn
SRR3105737 MDR-TB lineage1.2.2.2 None
ERR1035337 MDR-TB lineage4.1.2.1 br
SRR3105731 Pre-XDR-TB lineage3 None
ERR1034586 Pre-XDR-TB lineage3.1.2 pk
SAMN02381009 MDR-TB lineage4.4.1.1 None
SRR671754 Pre-XDR-TB lineage2.2.1 cn
ERR1034653 MDR-TB lineage4.8 bg
ERR1034581 Pre-XDR-TB lineage3.1.2 pk
ERR1034663 MDR-TB lineage4.8 bg
ERR1664653 MDR-TB lineage4.2.1 None
ERR1664643 MDR-TB lineage4.2.1 None
ERR1034594 MDR-TB lineage3 pk
SRR5710013 Pre-XDR-TB lineage4.4.2 th
ERR1664663 MDR-TB lineage4.2.1 None
ERR4813604 Pre-XDR-TB lineage4.3.3 None
ERR1034600 Pre-XDR-TB lineage3 pk
SRR5341329 Pre-XDR-TB lineage4.8 in
SRR5341273 MDR-TB lineage1.2.2.2 in
SAMN02419604 Pre-XDR-TB lineage2.2.1 by
ERR1034845 MDR-TB lineage4.3.4.2 pt
SRR5341227 Pre-XDR-TB lineage4.3.3 in
SAMN02419550 MDR-TB lineage2.2.1 by
SAMN02419545 MDR-TB lineage2.2.1 by
SAMN02419582 MDR-TB lineage2.2.1 by
SAMN02419641 MDR-TB lineage2.2.1 by
ERR2510599 MDR-TB lineage4.8 None
ERR1035169 Pre-XDR-TB lineage2.2.1 sa
ERR038754 MDR-TB lineage4.4.1.1 ug
SRR6256978 MDR-TB lineage2.2.2 ru
SRR5153234 Pre-XDR-TB lineage2.2.1 None
ERR2864246 MDR-TB lineage4.3.4.1 pt
ERR2864220 MDR-TB lineage4.2.1 pt
SRR5152896 MDR-TB lineage2.2.1 None
ERR7911512 Pre-XDR-TB lineage2.2.1 vn
ERR7911107 MDR-TB lineage2.2.1 vn
SRR5153257 MDR-TB lineage4.2.1.1 None
SRR5153808 Pre-XDR-TB lineage2.2.1 None
ERR7911108 MDR-TB lineage2.2.1 vn
ERR7911536 Pre-XDR-TB lineage4.1.1.3 za
ERR7911518 MDR-TB lineage2.2.1 vn
ERR7911335 MDR-TB lineage2.2.1 us
SAMN02231166 MDR-TB lineage4.1 ml
ERR7911077 MDR-TB lineage4.3.3 md
SRR2100131 MDR-TB lineage4.8 None
SRR5341251 MDR-TB lineage2.2.1 None
SAMN02414968 MDR-TB lineage2.2.1 se
ERR2707146 MDR-TB lineage4.3.3 cd
ERR2707030 MDR-TB lineage4.3.3 cd
SRR1166297 MDR-TB lineage4.8 ro
SRR5535857 MDR-TB lineage4.6.1.2 None
ERR2706972 MDR-TB lineage4.3.3 cd
SAMN02381012 MDR-TB lineage4.4.1.1 None
ERR144635 MDR-TB lineage2.2.1 ru
ERR4827934 MDR-TB lineage4.2.1 None
ERR229936 MDR-TB lineage2.2.1 ru
ERR234649 MDR-TB lineage2.2.1 ru
ERR2517010 Pre-XDR-TB lineage2.2.1.1 gb
ERR3148190 MDR-TB lineage4.1.2.1 mx
ERR4797763 Pre-XDR-TB lineage2.2.1.1 in
ERR4831250 Pre-XDR-TB lineage2.2.1 de
ERR2516824 Pre-XDR-TB lineage2.2.1.1 gb
ERR2516841 Pre-XDR-TB lineage2.2.1.1 gb
ERR2516985 MDR-TB lineage4.6.2.2;lineage2.2.1.1 gb
ERR4797868 Pre-XDR-TB lineage4.8 in
ERR4797893 MDR-TB lineage4.3.3 in
ERR4796706 Pre-XDR-TB lineage2.2.1 in
ERR4798124 Pre-XDR-TB lineage2.2.1 in
ERR2516424 Pre-XDR-TB lineage4.3.4.2 pe
ERR3335754 MDR-TB lineage3 pk
ERR4799010 Pre-XDR-TB lineage2.2.1.1 in
ERR4829996 MDR-TB lineage4.6.2.2 None
ERR2516239 MDR-TB lineage2.2.1 be
ERR4797035 Pre-XDR-TB lineage4.8 in
ERR4796703 MDR-TB lineage4.8 in
ERR4796732 Pre-XDR-TB lineage4.9 in
ERR4799592 Pre-XDR-TB lineage3 in
SRR6485055 HR-TB lineage4.8 None
ERR4810968 Pre-XDR-TB lineage2.2.1 cn
ERR4796913 Pre-XDR-TB lineage4.1.1.3 in
ERR4798417 MDR-TB lineage2.2.1 in
ERR4798573 MDR-TB lineage4.3.3 in
ERR4798635 Pre-XDR-TB lineage4.3.3 in
SRR6485099 Pre-XDR-TB lineage2.2.1 None
SRR6511607 MDR-TB lineage4.3.4.1 None
SRR6257003 Pre-XDR-TB lineage2.2.1 None
SRR6256968 MDR-TB lineage2.2.1 None
ERR4811536 Pre-XDR-TB lineage2.2.1 cn
ERR4822608 Pre-XDR-TB lineage2.2.1 de
ERR4822603 Pre-XDR-TB lineage2.2.1 de
SRR6257108 MDR-TB lineage2.2.1 None
ERR4831244 Pre-XDR-TB lineage2.2.1 de
ERR4800084 Pre-XDR-TB lineage3.1.2 in
ERR4830970 Pre-XDR-TB lineage4.2.2.2 np
ERR4799898 MDR-TB lineage1.2.2.2 in
ERR2510472 MDR-TB lineage3 pk
ERR4800201 Pre-XDR-TB lineage3.1 in
ERR4799659 MDR-TB lineage2.2.1.1 in
SRR6831806 MDR-TB lineage2.2.1 None
ERR4829916 MDR-TB lineage4.8;lineage4.1.2.1 it
ERR4800326 MDR-TB lineage2.2.1 in
ERR4831503 Pre-XDR-TB lineage3 None
ERR4872280 Pre-XDR-TB lineage4.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4872186 MDR-TB lineage4.6.2.2 None
ERR4872329 Pre-XDR-TB lineage4.2.1 None
SRR6824357 Pre-XDR-TB lineage4.4.2 None
ERR2510466 MDR-TB lineage3 pk
ERR5917688 MDR-TB lineage2.2.1 by
ERR5917692 MDR-TB lineage2.2.1 by
ERR2510389 Pre-XDR-TB lineage3 pk
ERR4831471 Pre-XDR-TB lineage4.8 pk
ERR4831508 Pre-XDR-TB lineage3 pk
ERR2510358 MDR-TB lineage2.2.1 pk
ERR2510300 MDR-TB lineage3 pk
ERR2510292 Pre-XDR-TB lineage3 pk
ERR4829943 MDR-TB lineage3 pk
ERR2510445 Pre-XDR-TB lineage3 pk
ERR2510423 Pre-XDR-TB lineage3 pk
SRR7517724 HR-TB lineage4;lineage2 None
ERR3014590 Pre-XDR-TB lineage4.8 None
SRR9613542 MDR-TB lineage4.1.2 None
ERR2510476 RR-TB lineage3 pk
SRR924716 MDR-TB lineage2.2.1 None
SRR958495 MDR-TB lineage2.2.1 None
SRR7517738 MDR-TB lineage2.2.1 None
ERR11488641 MDR-TB lineage4.4.1.1 None
SRR7653084 Pre-XDR-TB lineage2.2.1 None
SRR7653612 HR-TB lineage2.2.1 None
DRR130200 Pre-XDR-TB lineage4 None
DRR130199 Pre-XDR-TB lineage2.2.1 None
ERR11488780 MDR-TB lineage4.4.1.1 None
SRR9028488 MDR-TB lineage3 None
SRR9224918 MDR-TB lineage4.3.3 None
ERR11488795 RR-TB lineage3.1.1 None