Run ID: DRR130200
Sample name:
Date: 31-03-2023 07:09:31
Number of reads: 3168288
Percentage reads mapped: 99.58
Strain: lineage4
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrB | 6621 | p.Asp461Ala | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrA | 7570 | p.Ala90Val | missense_variant | 0.99 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761140 | p.His445Arg | missense_variant | 1.0 | rifampicin |
rpoB | 761149 | p.Arg448Gln | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288850 | c.390_391dupGG | frameshift_variant | 1.0 | pyrazinamide, pyrazinamide |
embB | 4247729 | p.Gly406Ser | missense_variant | 1.0 | ethambutol |
gid | 4407851 | c.351delG | frameshift_variant | 1.0 | streptomycin |
ethA | 4326343 | c.-2168_1130del | frameshift_variant&start_lost | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8147 | p.Asn282Lys | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800665 | c.-144A>G | upstream_gene_variant | 1.0 |
fbiC | 1304501 | p.Ala524Gly | missense_variant | 1.0 |
fbiC | 1305357 | c.2427C>G | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472793 | n.948A>G | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3449390 | p.Arg296Leu | missense_variant | 0.16 |
Rv3083 | 3449603 | p.Leu367Arg | missense_variant | 0.56 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612269 | p.Asp283Gly | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338696 | c.-176_-175insT | upstream_gene_variant | 1.0 |