ERR4829041
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR1169075
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22175177
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11081859
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1169141
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163203
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163204
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665505
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665594
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5153707
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169039
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5152943
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4798639
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR4815540
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419661
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR8665581
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831093
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232591
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232497
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232603
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387487
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11044523
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419624
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR5917753
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR8665646
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665786
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864887
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665862
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665937
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797843
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797928
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR228036
|
MDR-TB
|
lineage4.3.3
|
ru
|
ERR9121317
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13232681
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866390
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5709932
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR8665640
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665738
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR23340053
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665549
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458440
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1174863
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665548
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665972
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9119661
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR924711
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088477
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163341
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419653
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR8665547
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665624
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR8665844
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12307395
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR2993039
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181071
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232514
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917667
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR10828195
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169058
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665605
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232529
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR26387485
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665595
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665939
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163001
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831100
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458444
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23340057
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5266540
|
MDR-TB
|
lineage4.3.3
|
ru
|
ERR13249492
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02419678
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR13232759
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR2516964
|
Pre-XDR-TB
|
lineage4.3.3
|
gb
|
ERR5865814
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14807589
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831098
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665821
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1159810
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21776299
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28706618
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172438
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866304
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831094
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163363
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR2993037
|
MDR-TB
|
lineage4.3.3
|
ru
|
SRR13232665
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232752
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180995
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169122
|
HR-TB
|
lineage4.3.3
|
None
|
SRR13232772
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6356981
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172129
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR26387486
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR26387491
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1168985
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11798646
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6458391
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7652969
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7655952
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR867550
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4800394
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR28351568
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6458434
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665686
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866520
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4830769
|
MDR-TB
|
lineage4.3.3
|
ir
|
ERR4831101
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387480
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18714843
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665694
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR5864884
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1159377
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387502
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13262154
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7516418
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR4799006
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR23340052
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665981
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864883
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1168987
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232720
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917731
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR8665664
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163338
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172393
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866171
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458415
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28714178
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665645
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665879
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665962
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419622
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR5917736
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR5917712
|
MDR-TB
|
lineage4.3.3
|
by
|
SAMN02058519
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665558
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4195334
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13232707
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163189
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665658
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665663
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232527
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232779
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665564
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232496
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6785224
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1159303
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163342
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163089
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866532
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665803
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR4800232
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR6458442
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232495
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419555
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR5864885
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7975639
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6356979
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169228
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163106
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29539178
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11082142
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5917738
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR7657747
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665739
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665823
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866303
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5917717
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR4798107
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR13232428
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665561
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232718
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5917670
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SAMN02419551
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR4553799
|
MDR-TB
|
lineage4.9
|
None
|
ERR4799145
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR13232509
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232530
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163137
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163319
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232721
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5341286
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8665506
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232761
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6356924
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917741
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR5866301
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516206
|
Pre-XDR-TB
|
lineage4.3.3
|
be
|
ERR8665919
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665711
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665789
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665853
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665987
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6785542
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4829042
|
Pre-XDR-TB
|
lineage4.1.2.1
|
it
|
SRR6458390
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539174
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665692
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1162537
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1159290
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5709801
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR4796903
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR924240
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1174850
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5153708
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665540
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172299
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3994103
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR13232513
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232566
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232568
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665751
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11775744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5266550
|
MDR-TB
|
lineage4.3.3
|
ru
|
SRR6511594
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1174858
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8651624
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR958480
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1168975
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2864247
|
MDR-TB
|
lineage4.3.3
|
pt
|
ERR11081860
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4810867
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR7911739
|
Pre-XDR-TB
|
lineage4.3.3
|
us
|
SRR1163399
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1166908
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1169014
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163194
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1162961
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172130
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18715121
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665600
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665704
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02419549
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR13245231
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR1174825
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232730
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232729
|
MDR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR13262150
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8665693
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665785
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665938
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232666
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180921
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181098
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232698
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10147695
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665829
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4800532
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8665973
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665773
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665627
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24710204
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799625
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR5865949
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1159747
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172251
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9119665
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256321
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797927
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR25207387
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169040
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6785524
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665667
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5341421
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR1163115
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458462
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232710
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917669
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR1159129
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665801
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665860
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8665639
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169103
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866300
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797395
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8665733
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02419647
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR8665681
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665732
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665989
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR13232712
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665889
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665657
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21776298
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232595
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665790
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4800440
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR23310974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665626
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665623
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR8665705
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181033
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665747
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665774
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163412
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232569
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232679
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163296
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1159002
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6357000
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232693
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14807597
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419563
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR1168959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163185
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866169
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18714841
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232706
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6356927
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6356932
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5341471
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SAMN02419626
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR8665953
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387464
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4798890
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR1172162
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387484
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1169127
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665698
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR8665843
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911484
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR1163379
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917721
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR5866302
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665871
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665855
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232539
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232723
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10341356
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043123
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782590
|
HR-TB
|
lineage2.2.1
|
None
|
SRR13232501
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864886
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6257002
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14781894
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665625
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797105
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR11082831
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24256059
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172185
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5865813
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866389
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419654
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR5153134
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232466
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1162996
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180938
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232580
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181204
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163140
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665668
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665816
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665904
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419600
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR8665914
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665699
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1180950
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232573
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232699
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28239436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284885
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665952
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665746
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665824
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26387482
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665682
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665940
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181128
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181300
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163337
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665710
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665836
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665936
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232764
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181131
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827367
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866533
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR12916917
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR26937129
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419618
|
MDR-TB
|
lineage4.3.3
|
by
|
SRR6356962
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796823
|
MDR-TB
|
lineage2.2.1.1
|
in
|
SRR23340071
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24709993
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276024
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665659
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4132452
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665524
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1183963
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4132453
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN01925690
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665628
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR23340164
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888053
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4818657
|
Pre-XDR-TB
|
lineage4.3.3
|
gb
|
SRR6458427
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510271
|
MDR-TB
|
lineage3
|
pk
|
ERR3077931
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR8665620
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24256342
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665573
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665563
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665868
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419672
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SAMN02419669
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR8665553
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11798594
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159308
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5917758
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR13232465
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1159006
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419671
|
MDR-TB
|
lineage4.3.3
|
by
|
ERR8665834
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232526
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284094
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866388
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18715069
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16088468
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25515569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172424
|
HR-TB
|
lineage4.3.3
|
None
|
ERR11081699
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665511
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665522
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665537
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665921
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665925
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232536
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232747
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13284043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232675
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4828115
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26387469
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665915
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798724
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR5866299
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458446
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28240239
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665830
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665685
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4814678
|
Pre-XDR-TB
|
lineage4.3.3
|
gb
|
SAMN02419572
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR8665613
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798969
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8665512
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163385
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02419657
|
MDR-TB
|
lineage4.3.3
|
by
|
SRR1163286
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5917748
|
MDR-TB
|
lineage4.3.3
|
by
|
SRR1163006
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665808
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665896
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665920
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665941
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163315
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16088149
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13289865
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8665750
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172044
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6458416
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665991
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232498
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|