Rv2043c - p.Leu4Ser
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
7 RR-TB
5 HR-TB
185 MDR-TB
54 Pre-XDR-TB
1 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 4 |
| lineage2.2.1 | 121 |
| lineage4.1.2.1 | 29 |
| lineage4.3.3 | 28 |
| lineage4.1.2 | 5 |
| lineage4.2.1 | 8 |
| lineage4.3.4.2 | 7 |
| lineage4.2.2.1 | 14 |
| lineage1.1.3.1;lineage4.7 | 2 |
| lineage4 | 15 |
| lineage1.2.1.2.1 | 5 |
| lineage4.2.2.2 | 2 |
| lineage4.4.2 | 3 |
| lineage2.2.1.1 | 3 |
| lineage2.2.2 | 2 |
| lineage4.5 | 1 |
| lineage4.7 | 2 |
| lineage3.1.3 | 1 |
| lineage3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 258 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11069098 | Pre-XDR-TB | lineage4.8 | None | SRR7069990 | MDR-TB | lineage2.2.1 | None | SRR29273955 | MDR-TB | lineage4.1.2.1 | None | ERR11082638 | MDR-TB | lineage2.2.1 | None | SRR12420413 | Pre-XDR-TB | lineage2.2.1 | None | ERR386928 | MDR-TB | lineage2.2.1 | None | ERR12268441 | MDR-TB | lineage4.1.2.1 | None | SRR13583462 | MDR-TB | lineage4.3.3 | None | ERR3273148 | MDR-TB | lineage2.2.1 | None | SRR29081635 | Pre-XDR-TB | lineage4.1.2 | None | SRR29081634 | Pre-XDR-TB | lineage4.1.2 | None | SRR10379971 | MDR-TB | lineage4.2.1 | None | ERR3639782 | Pre-XDR-TB | lineage4.8 | None | ERR13284141 | Pre-XDR-TB | lineage4.8 | None | SRR6797323 | Other | lineage2.2.1 | None | ERR11081546 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1173490 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050224 | MDR-TB | lineage2.2.1 | None | ERR1193648 | MDR-TB | lineage4.3.3 | None | ERR278569 | MDR-TB | lineage2.2.1 | None | SRR29050881 | MDR-TB | lineage4.3.3 | None | SRR29051586 | MDR-TB | lineage4.3.4.2 | None | SRR29274241 | MDR-TB | lineage4.2.2.1 | None | SRR28646076 | MDR-TB | lineage4.1.2.1 | None | ERR2027265 | MDR-TB | lineage2.2.1 | None | SRR29050725 | MDR-TB | lineage4.3.4.2 | None | SRR29274033 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13232463 | MDR-TB | lineage2.2.1 | None | ERR13267053 | Pre-XDR-TB | lineage2.2.1 | None | SRR11786871 | MDR-TB | lineage2.2.1 | None | SRR25206936 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389445 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340131 | MDR-TB | lineage2.2.1 | None | ERR10762444 | MDR-TB | lineage4.2.1 | None | SRR29231568 | RR-TB | lineage1.1.3.1;lineage4.7 | None | SRR29017107 | MDR-TB | lineage4 | None | SRR13232785 | MDR-TB | lineage2.2.1 | None | ERR11081705 | MDR-TB | lineage2.2.1 | None | ERR4822406 | MDR-TB | lineage2.2.1 | ua | ERR4822551 | MDR-TB | lineage2.2.1 | ua | ERR114457 | MDR-TB | lineage2.2.1 | None | SRR29051287 | MDR-TB | lineage4.3.4.2 | None | SRR18213905 | MDR-TB | lineage2.2.1 | None | SAMN02381040 | Pre-XDR-TB | lineage4 | ug | ERR11082097 | MDR-TB | lineage4.1.2.1 | None | SAMN02414900 | MDR-TB | lineage2.2.1 | se | SRR6797451 | RR-TB | lineage4 | None | SRR671789 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11082361 | Pre-XDR-TB | lineage2.2.1 | None | SRR671864 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6397957 | MDR-TB | lineage1.2.1.2.1 | ca | ERR11043731 | MDR-TB | lineage4.1.2.1 | None | ERR7737683 | MDR-TB | lineage4.2.2.2 | None | SRR28394107 | MDR-TB | lineage4.1.2.1 | None | SRR28706405 | MDR-TB | lineage2.2.1 | None | ERR751550 | MDR-TB | lineage4.3.3 | pe | ERR4830933 | Pre-XDR-TB | lineage2.2.1 | np | ERR4811199 | RR-TB | lineage4.4.2 | cn | ERR4812365 | HR-TB | lineage4.3.3 | pe | ERR1023353 | MDR-TB | lineage2.2.1 | None | ERR8665593 | MDR-TB | lineage2.2.1 | None | ERR4813195 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR23691408 | RR-TB | lineage2.2.1 | None | SRR14782620 | Pre-XDR-TB | lineage4.2.1 | None | ERR2513564 | MDR-TB | lineage2.2.1 | gb | ERR2513835 | MDR-TB | lineage2.2.1 | gb | ERR2513221 | Pre-XDR-TB | lineage4 | gb | ERR2512591 | MDR-TB | lineage2.2.1 | gb | SRR1173844 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394055 | MDR-TB | lineage4.3.3 | None | SRR29017620 | Pre-XDR-TB | lineage4 | None | ERR4872300 | Pre-XDR-TB | lineage4.2.1 | None | ERR12118014 | MDR-TB | lineage4.3.3 | None | SRR21887767 | MDR-TB | lineage2.2.1 | None | SRR16058316 | MDR-TB | lineage1.2.1.2.1 | None | SRR23340032 | MDR-TB | lineage2.2.1 | None | ERR4024854 | MDR-TB | lineage4.3.3 | None | ERR11050223 | MDR-TB | lineage2.2.1 | None | ERR2677466 | MDR-TB | lineage4.2.2.1 | de | SRR23340083 | MDR-TB | lineage2.2.1 | None | ERR13290397 | MDR-TB | lineage2.2.1 | None | ERR13290395 | MDR-TB | lineage2.2.1 | None | SRR7069279 | MDR-TB | lineage2.2.1 | None | ERR9125418 | MDR-TB | lineage1.2.1.2.1 | None | SRR13583463 | MDR-TB | lineage4.3.3 | None | SRR12416845 | MDR-TB | lineage2.2.1 | None | DRR130070 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062930 | Pre-XDR-TB | lineage4 | None | SRR5486899 | MDR-TB | lineage4.1.2.1 | None | ERR1034880 | MDR-TB | lineage2.2.1 | pt | SRR13583459 | MDR-TB | lineage4.3.4.2 | None | SRR6650303 | Other | lineage2.2.1 | None | ERR13286031 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262110 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29093934 | MDR-TB | lineage2.2.2 | None | SRR29274015 | MDR-TB | lineage4.1.2.1 | None | ERR13191062 | MDR-TB | lineage2.2.2 | None | ERR13276425 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13232524 | MDR-TB | lineage2.2.1 | None | ERR867536 | MDR-TB | lineage2.2.1 | None | ERR3256132 | MDR-TB | lineage4.5 | ph | ERR13285055 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274041 | MDR-TB | lineage4.1.2.1 | None | SRR22251177 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231325 | MDR-TB | lineage4.7 | None | ERR117737 | MDR-TB | lineage2.2.1 | None | SRR4423155 | MDR-TB | lineage4 | None | SRR29051058 | MDR-TB | lineage4.3.3 | None | ERR4872283 | Pre-XDR-TB | lineage4.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR1172895 | Pre-XDR-TB | lineage3.1.3 | None | SRR29017376 | MDR-TB | lineage4.8 | None | ERR7911370 | MDR-TB | lineage4.3.3 | None | SRR29081565 | Pre-XDR-TB | lineage4.1.2 | None | SRR29273764 | MDR-TB | lineage4.1.2.1 | None | SRR16149134 | MDR-TB | lineage4.2.2.1 | None | SRR7131052 | Other | lineage4.1.2.1 | None | SRR29356683 | Pre-XDR-TB | lineage2.2.1 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR11069115 | MDR-TB | lineage4.2.2.1 | None | SRR7592349 | MDR-TB | lineage4.1.2.1 | None | ERR2510570 | MDR-TB | lineage3 | pk | SRR29274242 | MDR-TB | lineage4.2.2.1 | None | ERR13285056 | MDR-TB | lineage4.1.2.1 | None | SRR11662674 | MDR-TB | lineage2.2.1 | None | ERR4553947 | MDR-TB | lineage4 | None | SRR29274215 | MDR-TB | lineage4.1.2.1 | None | ERR4798675 | MDR-TB | lineage2.2.1.1 | in | SRR29358143 | HR-TB | lineage4.1.2.1 | None | SRR16149143 | MDR-TB | lineage4.2.2.1 | None | SRR25207114 | RR-TB | lineage4.4.2 | None | SRR28393914 | MDR-TB | lineage4.3.3 | None | SRR28923835 | MDR-TB | lineage2.2.1 | None | ERR6865419 | MDR-TB | lineage4.3.3 | None | SRR6397408 | MDR-TB | lineage2.2.1.1 | ca | ERR4829112 | MDR-TB | lineage2.2.1 | it | ERR4830905 | Pre-XDR-TB | lineage2.2.1 | np | ERR4829391 | MDR-TB | lineage2.2.1 | it | ERR4812836 | MDR-TB | lineage4.3.4.2 | None | ERR8665530 | Pre-XDR-TB | lineage2.2.1 | None | SRR3732645 | MDR-TB | lineage4.3.3 | None | SRR7069827 | MDR-TB | lineage2.2.1 | None | SRR23340033 | MDR-TB | lineage2.2.1 | None | SRR23340037 | MDR-TB | lineage2.2.1 | None | SRR2099969 | MDR-TB | lineage2.2.1 | None | SRR2100387 | MDR-TB | lineage2.2.1 | None | SRR2100950 | MDR-TB | lineage2.2.1 | None | ERR2677405 | Pre-XDR-TB | lineage2.2.1 | de | ERR2516882 | MDR-TB | lineage2.2.1 | gb | ERR2516927 | MDR-TB | lineage2.2.1 | gb | ERR2516822 | MDR-TB | lineage2.2.1 | gb | ERR2517099 | MDR-TB | lineage2.2.1 | gb | ERR2516854 | MDR-TB | lineage2.2.1 | gb | ERR2516916 | MDR-TB | lineage2.2.1 | gb | ERR2516991 | MDR-TB | lineage2.2.1 | gb | ERR2517006 | MDR-TB | lineage2.2.1 | gb | ERR2517053 | MDR-TB | lineage2.2.1 | gb | ERR2516569 | MDR-TB | lineage4.3.3 | nl | ERR2516432 | MDR-TB | lineage4.3.3 | nl | ERR2516671 | MDR-TB | lineage4.3.3 | nl | ERR2516638 | MDR-TB | lineage4.3.3 | nl | ERR2510742 | Other | lineage4.1.2.1 | it | ERR4815069 | MDR-TB | lineage2.2.1 | gb | ERR4817233 | MDR-TB | lineage2.2.1 | gb | ERR2512419 | MDR-TB | lineage2.2.1 | gb | SRR1049730 | Pre-XDR-TB | lineage4 | None | SRR1163039 | MDR-TB | lineage2.2.1 | None | ERR040137 | MDR-TB | lineage4.1.1.3 | ug | SRR7517813 | MDR-TB | lineage4.3.3 | pe | ERR13276427 | MDR-TB | lineage2.2.1 | None | SRR23340089 | MDR-TB | lineage2.2.1 | None | SRR1163448 | MDR-TB | lineage2.2.1 | None | ERR1034631 | HR-TB | lineage4.1.2 | br | ERR6544665 | HR-TB | lineage4.1.2 | None | SRR16088555 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050171 | MDR-TB | lineage2.2.1 | None | SRR23938637 | MDR-TB | lineage2.2.1 | None | SRR28394052 | MDR-TB | lineage4.3.3 | None | SRR29050863 | MDR-TB | lineage4.3.3 | None | SRR10379957 | MDR-TB | lineage4.2.1 | None | SRR1049729 | MDR-TB | lineage4 | None | ERR4829940 | Pre-XDR-TB | lineage3;lineage4 | pk | ERR4822293 | MDR-TB | lineage4.2.2.1 | de | ERR4811310 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13291847 | Other | lineage1.2.1.2.1 | None | ERR867548 | MDR-TB | lineage2.2.1 | None | ERR12268446 | MDR-TB | lineage4.1.2.1 | None | SRR1144756 | MDR-TB | lineage2.2.1 | None | SRR16100732 | Other | lineage1.2.1.2.1 | None | ERR13290396 | MDR-TB | lineage2.2.1 | None | SRR29017213 | XDR-TB | lineage4 | None | ERR6358869 | MDR-TB | lineage4.6.1.1 | None | SRR28393533 | MDR-TB | lineage4.3.3 | None | ERR13285710 | MDR-TB | lineage4.2.1 | None | SRR29274182 | MDR-TB | lineage4.1.2.1 | None | ERR13290394 | MDR-TB | lineage2.2.1 | None | ERR13276283 | MDR-TB | lineage4.2.2.1 | None | SRR24466751 | MDR-TB | lineage4.1.2.1 | None | SRR29017377 | MDR-TB | lineage2.2.1 | None | SRR25389446 | Pre-XDR-TB | lineage2.2.1 | None | SRR1146378 | MDR-TB | lineage2.2.1 | None | SRR13232719 | MDR-TB | lineage2.2.1 | None | ERR13276276 | MDR-TB | lineage4.2.2.1 | None | SRR7069759 | MDR-TB | lineage2.2.1 | None | ERR11081067 | MDR-TB | lineage4.2.2.1 | None | SRR23340065 | MDR-TB | lineage2.2.1 | None | ERR2516979 | MDR-TB | lineage2.2.1 | gb | ERR270679 | MDR-TB | lineage2.2.1 | None | SRR29274038 | MDR-TB | lineage4.1.2.1 | None | ERR4827651 | MDR-TB | lineage2.2.1 | None | ERR13258450 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232776 | MDR-TB | lineage2.2.1 | None | SRR5485482 | RR-TB | lineage4.9 | None | ERR2510458 | MDR-TB | lineage3.1.2.1 | pk | ERR9027235 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274189 | MDR-TB | lineage4.1.2.1 | None | SRR29016829 | Pre-XDR-TB | lineage4 | None | ERR11083063 | MDR-TB | lineage2.2.1 | None | SRR671863 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02628490 | Pre-XDR-TB | lineage2.2.1 | ir | SRR1140739 | Pre-XDR-TB | lineage4 | None | SRR28393993 | MDR-TB | lineage4.3.3 | None | ERR1034668 | MDR-TB | lineage4.2.2.1 | bg | ERR2706927 | RR-TB | lineage1.1.3.1;lineage4.7 | cd | ERR2707005 | MDR-TB | lineage4.7 | cd | SRR28706477 | MDR-TB | lineage2.2.1 | None | ERR4829103 | MDR-TB | lineage4.2.2.2 | dj | ERR3639773 | MDR-TB | lineage2.2.1 | None | SRR28393417 | MDR-TB | lineage4.3.3 | None | ERR4407548 | HR-TB | lineage4.1.2.1 | None | SRR10379956 | Pre-XDR-TB | lineage4.2.1 | None | SRR8327859 | MDR-TB | lineage2.2.1 | None | SRR2100306 | MDR-TB | lineage2.2.1 | None | SRR5266534 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2041944 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516880 | MDR-TB | lineage2.2.1 | gb | ERR2516552 | MDR-TB | lineage4.3.3 | pe | ERR4816918 | MDR-TB | lineage2.2.1 | gb | ERR2513572 | MDR-TB | lineage2.2.1 | gb | ERR2514395 | MDR-TB | lineage4 | gb | SRR5710013 | Pre-XDR-TB | lineage4.4.2 | th | ERR9027237 | MDR-TB | lineage2.2.1 | None | SRR16149119 | MDR-TB | lineage4.2.2.1 | None | SRR29273701 | MDR-TB | lineage4.1.2.1 | None | ERR13284163 | MDR-TB | lineage2.2.1 | None | ERR114514 | MDR-TB | lineage2.2.1 | None | SRR10525360 | MDR-TB | lineage4.1.2.1 | None | SRR29274070 | MDR-TB | lineage4.1.2.1 | None | SRR29539771 | MDR-TB | lineage2.2.1 | None | SRR13583471 | MDR-TB | lineage4.3.4.2 | None | ERR2677462 | MDR-TB | lineage4.2.2.1 | de | SRR16149132 | MDR-TB | lineage4.2.2.1 | None | SRR6650186 | MDR-TB | lineage4 | None | SRR5486881 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR28393984 | MDR-TB | lineage4.3.3 | None | ERR7911369 | MDR-TB | lineage4.3.3 | None | ERR9027234 | Pre-XDR-TB | lineage2.2.1 | None | ERR7910873 | MDR-TB | lineage4.3.3 | pe |
|---|
