lineage | Count |
---|---|
lineage2.2.1 | 31 |
lineage4.2.2.2 | 44 |
lineage4.3.4.2 | 15 |
lineage4.2.2.1 | 11 |
lineage1.1.2 | 1 |
La3 | 3 |
lineage4;lineage2.2.1 | 1 |
lineage4.1.2.1 | 4 |
lineage3 | 2 |
lineage4.3.4.1 | 3 |
lineage2.2.2 | 5 |
lineage4.1.1.3 | 1 |
lineage4.2 | 1 |
lineage1.2.2.2 | 3 |
La1.8.1 | 1 |
lineage4.8;lineage4.2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 127 |
ID | Drug resistance | Lineage | Country iso2 | SRR7131017 | MDR-TB | lineage2.2.1 | None | ERR4829102 | Pre-XDR-TB | lineage4.2.2.2 | dj | ERR3287432 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3287847 | MDR-TB | lineage4.3.4.2 | pe | ERR3287693 | MDR-TB | lineage4.3.4.2 | pe | ERR3287800 | MDR-TB | lineage4.3.4.2 | pe | ERR4829097 | MDR-TB | lineage4.2.2.1 | dj | ERR3287456 | MDR-TB | lineage4.3.4.2 | pe | ERR2510266 | MDR-TB | lineage1.1.2 | pk | ERR3287851 | MDR-TB | lineage4.3.4.2 | pe | SRR833061 | MDR-TB | lineage2.2.1 | None | SRR833096 | MDR-TB | lineage2.2.1 | None | ERR017782 | Other | La3 | None | SRR8335248 | MDR-TB | lineage2.2.1 | None | ERR4819868 | MDR-TB | lineage4.2.2.1 | gb | ERR019856 | Other | La3 | None | ERR10680223 | MDR-TB | lineage2.2.1 | None | ERR11043052 | MDR-TB | lineage4;lineage2.2.1 | None | ERR4821159 | MDR-TB | lineage4.2.2.1 | gb | ERR11043078 | MDR-TB | lineage4.2.2.1 | None | ERR3794497 | MDR-TB | lineage2.2.1 | None | ERR3639795 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828954 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3794505 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011960 | MDR-TB | lineage4.2.2.2 | None | ERR11049861 | Other | lineage3 | None | ERR12117900 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5865682 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088563 | XDR-TB | lineage2.2.1 | None | ERR5865681 | Pre-XDR-TB | lineage2.2.1 | None | ERR6397213 | MDR-TB | lineage4.2.2.2 | None | ERR7737871 | MDR-TB | lineage4.2.2.2 | None | ERR7737675 | MDR-TB | lineage4.2.2.2 | None | ERR7737819 | MDR-TB | lineage4.2.2.2 | None | SRR16088585 | MDR-TB | lineage2.2.1 | None | ERR7737647 | MDR-TB | lineage4.2.2.2 | None | SRR24256143 | MDR-TB | lineage2.2.1 | None | ERR9907792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR9907762 | MDR-TB | lineage4.3.4.1 | None | SRR1013648 | Pre-XDR-TB | lineage2.2.2 | None | ERR9907793 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR9992663 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1049044 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013649 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049045 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144760 | MDR-TB | lineage4.2.2.2 | None | SRR1144814 | MDR-TB | lineage4.2.2.2 | None | SRR1144785 | MDR-TB | lineage4.2.2.2 | None | SRR1144784 | MDR-TB | lineage4.2 | None | SRR1146289 | MDR-TB | lineage4.2.2.2 | None | SRR1144808 | MDR-TB | lineage4.2.2.2 | None | SRR1144833 | MDR-TB | lineage4.2.2.2 | None | SRR1146293 | MDR-TB | lineage4.2.2.2 | None | SRR1162874 | MDR-TB | lineage4.2.2.2 | None | SRR1146301 | MDR-TB | lineage4.2.2.2 | None | SRR1146329 | MDR-TB | lineage4.2.2.2 | None | SRR1162796 | MDR-TB | lineage4.2.2.2 | None | SRR1146330 | MDR-TB | lineage4.2.2.2 | None | SRR1146309 | MDR-TB | lineage4.2.2.2 | None | SRR1162968 | MDR-TB | lineage4.2.2.2 | None | SRR1162879 | MDR-TB | lineage4.2.2.2 | None | SRR1163014 | MDR-TB | lineage4.2.2.2 | None | SRR1162986 | MDR-TB | lineage4.2.2.2 | None | SRR19304003 | Other | lineage4.1.2.1 | None | SRR1163093 | MDR-TB | lineage4.2.2.2 | None | SRR1163123 | MDR-TB | lineage4.2.2.2 | None | SRR1163128 | MDR-TB | lineage4.2.2.2 | None | SRR1163179 | MDR-TB | lineage4.2.2.2 | None | SRR1166925 | MDR-TB | lineage4.2.2.2 | None | SRR14802032 | MDR-TB | lineage2.2.1 | None | SRR19276638 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR19276643 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR1163085 | MDR-TB | lineage4.2.2.2 | None | SRR19303803 | Other | lineage4.1.2.1 | None | ERR11069133 | MDR-TB | lineage2.2.1 | None | SRR22048482 | Other | lineage4.1.2.1 | None | ERR11082442 | MDR-TB | lineage4.2.2.1 | None | SRR25207111 | MDR-TB | lineage2.2.1 | None | SRR24255899 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937103 | MDR-TB | lineage2.2.1 | None | SRR24710197 | MDR-TB | lineage2.2.1 | None | SRR25515243 | MDR-TB | lineage2.2.1 | None | SRR25207260 | MDR-TB | lineage2.2.1 | None | SRR24709995 | MDR-TB | lineage2.2.1 | None | SRR5341361 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR3082077 | MDR-TB | lineage4.2.2.1 | None | SRR671794 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813122 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR6824363 | RR-TB | lineage2.2.1 | cn | ERR027446 | MDR-TB | lineage2.2.1 | ru | ERR4817015 | MDR-TB | lineage4.2.2.1 | None | ERR3275716 | MDR-TB | lineage4.2.2.2 | nl | SRR5818580 | MDR-TB | lineage4.2.2.1 | dj | SAMN02053752 | MDR-TB | lineage2.2.1 | za | ERR4818892 | MDR-TB | lineage4.2.2.1 | None | ERR3275385 | MDR-TB | lineage4.2.2.2 | nl | ERR1023412 | MDR-TB | lineage4.2.2.2 | None | ERR3275727 | MDR-TB | lineage4.2.2.2 | nl | SAMN02414876 | MDR-TB | lineage4.2.2.2 | se | ERR751476 | MDR-TB | lineage4.3.4.2 | pe | ERR7910994 | MDR-TB | lineage4.3.4.2 | pe | SAMN02414887 | MDR-TB | lineage4.2.2.2 | se | SAMN02414873 | MDR-TB | lineage4.2.2.2 | se | SRR5341409 | Pre-XDR-TB | lineage1.2.2.2 | None | SAMN02414896 | MDR-TB | lineage4.2.2.2 | se | SAMN02414874 | MDR-TB | lineage4.2.2.2 | se | ERR133844 | MDR-TB | lineage2.2.1 | ru | SAMN02414930 | MDR-TB | lineage4.2.2.2 | se | SAMN02360603 | Pre-XDR-TB | lineage2.2.2 | kr | ERR2747652 | Other | La1.8.1 | None | ERR2446468 | MDR-TB | lineage4.2.2.2 | nl | ERR2516497 | MDR-TB | lineage4.3.4.2 | pe | ERR4821658 | Other | La3 | None | ERR2516491 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4822270 | MDR-TB | lineage4.2.2.1 | None | ERR11067246 | MDR-TB | lineage4.2.2.2 | None | ERR2516731 | MDR-TB | lineage4.3.4.2 | pe | ERR2517379 | MDR-TB | lineage4.2.2.2 | nl | ERR4810613 | MDR-TB | lineage2.2.1 | cn | SRR6458407 | MDR-TB | lineage2.2.1 | None | ERR4829837 | MDR-TB | lineage2.2.1 | it | ERR4797263 | MDR-TB | lineage3 | in | SRR6257056 | MDR-TB | lineage2.2.1 | None | ERR4830826 | HR-TB | lineage4.8;lineage4.2.2.2 | et | ERR4800543 | MDR-TB | lineage1.2.2.2 | in | ERR4830804 | MDR-TB | lineage4.2.2.1 | et | ERR4830824 | Pre-XDR-TB | lineage4.2.2.2 | et |
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