Rv2043c - p.Thr160Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
146 MDR-TB
134 Pre-XDR-TB
8 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 254 |
| lineage4.1.2.1 | 6 |
| lineage3 | 1 |
| lineage2.2.1;lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage2.2.1.1 | 6 |
| lineage2.2.1;lineage4.8.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage4.3.3 | 3 |
| lineage4.2.2.2 | 6 |
| lineage4.2.1 | 2 |
| lineage2.2.1;lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.5 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 291 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131183 | MDR-TB | lineage2.2.1 | None | SRR11972428 | Pre-XDR-TB | lineage2.2.1 | None | ERR6879023 | MDR-TB | lineage4.1.2.1 | None | ERR4011058 | MDR-TB | lineage2.2.1 | None | ERR11798609 | MDR-TB | lineage2.2.1 | None | SRR28044952 | MDR-TB | lineage3 | None | ERR1873432 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093757 | MDR-TB | lineage2.2.1 | None | SRR29096298 | MDR-TB | lineage2.2.1 | None | SRR29096310 | MDR-TB | lineage2.2.1 | None | SRR29094011 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380008 | MDR-TB | lineage2.2.1 | None | SRR29096836 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096337 | MDR-TB | lineage2.2.1 | None | SRR29096569 | MDR-TB | lineage2.2.1 | None | ERR5987274 | MDR-TB | lineage2.2.1 | None | SRR29093636 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096481 | MDR-TB | lineage2.2.1 | None | ERR10748152 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748382 | MDR-TB | lineage2.2.1 | None | ERR10748502 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869058 | MDR-TB | lineage2.2.1 | None | ERR1873560 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094090 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831536 | XDR-TB | lineage2.2.1 | None | SRR29096574 | Pre-XDR-TB | lineage2.2.1 | None | ERR4896313 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093825 | MDR-TB | lineage2.2.1 | None | SRR28393278 | MDR-TB | lineage4.1.2.1 | None | SRR29093606 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096377 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096509 | MDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR29096571 | MDR-TB | lineage2.2.1 | None | SRR29096112 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096612 | MDR-TB | lineage2.2.1 | None | SRR29093568 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093884 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156798 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093256 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096398 | MDR-TB | lineage2.2.1 | None | SRR16156819 | MDR-TB | lineage2.2.1 | None | SRR29093501 | MDR-TB | lineage2.2.1 | None | SRR29093827 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119984 | MDR-TB | lineage2.2.1 | None | SRR29093421 | MDR-TB | lineage2.2.1 | None | SRR29096616 | MDR-TB | lineage2.2.1 | None | SRR16156799 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094057 | MDR-TB | lineage2.2.1 | None | ERR9807039 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987226 | MDR-TB | lineage2.2.1 | None | ERR10112836 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093354 | MDR-TB | lineage2.2.1 | None | SRR16156733 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975682 | MDR-TB | lineage2.2.1 | None | SRR29094068 | MDR-TB | lineage2.2.1 | None | SRR8758881 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096301 | MDR-TB | lineage2.2.1 | None | SRR29096511 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755705 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR29093527 | MDR-TB | lineage2.2.1 | None | SRR29093431 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758354 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093488 | MDR-TB | lineage2.2.1 | None | SRR29096827 | MDR-TB | lineage2.2.1 | None | ERR9806878 | MDR-TB | lineage2.2.1 | None | SRR29094012 | MDR-TB | lineage2.2.1.1 | None | SRR22175230 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29096349 | MDR-TB | lineage2.2.1 | None | ERR8025608 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748288 | MDR-TB | lineage2.2.1 | None | SRR16156777 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093276 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093804 | MDR-TB | lineage2.2.1 | None | SRR29096479 | MDR-TB | lineage2.2.1 | None | ERR13292506 | MDR-TB | lineage2.2.1 | None | ERR10748114 | Pre-XDR-TB | lineage2.2.1;lineage4.8.1 | None | SRR29096489 | MDR-TB | lineage2.2.1 | None | SRR29094046 | MDR-TB | lineage2.2.1 | None | ERR1034644 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096372 | MDR-TB | lineage2.2.1 | None | SRR29096858 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093562 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799380 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR29096629 | MDR-TB | lineage2.2.1 | None | ERR7975675 | Pre-XDR-TB | lineage2.2.1 | None | SRR29050785 | MDR-TB | lineage2.2.1 | None | SRR29093263 | MDR-TB | lineage2.2.1 | None | SRR29096839 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093840 | MDR-TB | lineage2.2.1 | None | SRR29093854 | MDR-TB | lineage2.2.1 | None | SRR16156774 | MDR-TB | lineage2.2.1 | None | ERR10112834 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025626 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093618 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094075 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096352 | MDR-TB | lineage2.2.1 | None | SRR29093832 | MDR-TB | lineage2.2.1 | None | ERR10748116 | MDR-TB | lineage2.2.1 | None | ERR3287372 | MDR-TB | lineage4.1.2.1 | pe | ERR3287541 | MDR-TB | lineage4.1.2.1 | None | ERR5865724 | MDR-TB | lineage2.2.1 | None | ERR7911526 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911539 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911557 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911579 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | za | ERR2707153 | MDR-TB | lineage4.3.3 | cd | ERR8025609 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023465 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515754 | MDR-TB | lineage2.2.1 | None | ERR8975714 | Pre-XDR-TB | lineage2.2.1 | None | ERR2660450 | MDR-TB | lineage2.2.1 | None | ERR4011051 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758371 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119830 | MDR-TB | lineage2.2.1 | None | SRR10869258 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093596 | MDR-TB | lineage2.2.1 | None | SRR29096952 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093584 | MDR-TB | lineage2.2.1 | None | ERR4827912 | MDR-TB | lineage2.2.1 | None | ERR4011076 | MDR-TB | lineage2.2.1 | None | SRR29093270 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096321 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096947 | MDR-TB | lineage2.2.1 | None | ERR10748099 | Pre-XDR-TB | lineage2.2.1 | None | SRR3082080 | MDR-TB | lineage4.2.2.2 | None | ERR4011057 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818638 | MDR-TB | lineage4.2.2.2 | dj | ERR1873410 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119713 | MDR-TB | lineage2.2.1 | None | ERR8025496 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992778 | MDR-TB | lineage2.2.1 | None | ERR9992782 | MDR-TB | lineage2.2.1 | None | SRR10869280 | Pre-XDR-TB | lineage2.2.1 | None | ERR13286137 | XDR-TB | lineage2.2.1 | None | SRR3082125 | MDR-TB | lineage4.2.1 | None | ERR9030318 | MDR-TB | lineage2.2.1 | None | ERR10748379 | MDR-TB | lineage2.2.1 | None | ERR13286098 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085334 | MDR-TB | lineage4.2.2.2 | None | ERR4011086 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993142 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992832 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288928 | MDR-TB | lineage2.2.1 | None | ERR9992829 | MDR-TB | lineage2.2.1 | None | ERR2515371 | Pre-XDR-TB | lineage2.2.1 | za | SRR3082103 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093696 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362178 | MDR-TB | lineage2.2.1 | None | ERR4832019 | MDR-TB | lineage2.2.1 | vn | ERR8975808 | XDR-TB | lineage2.2.1 | None | ERR3287741 | MDR-TB | lineage2.2.1 | pe | ERR1034638 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085359 | MDR-TB | lineage4.2.1 | None | ERR5865954 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992676 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093563 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093666 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096816 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096668 | MDR-TB | lineage2.2.1 | None | ERR10748240 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748349 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29093576 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096519 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865981 | MDR-TB | lineage2.2.1 | None | SRR16156802 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423530 | Other | lineage2.2.1 | None | SRR29093283 | Pre-XDR-TB | lineage2.2.1;lineage4.3.2.1 | None | SRR29097095 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096974 | MDR-TB | lineage2.2.1 | None | SRR29096417 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093546 | MDR-TB | lineage2.2.1 | None | SRR29093540 | MDR-TB | lineage2.2.1 | None | ERR10112888 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025420 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112885 | MDR-TB | lineage2.2.1 | None | SRR29096799 | MDR-TB | lineage2.2.1 | None | ERR4011065 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093635 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093314 | MDR-TB | lineage2.2.1 | None | SRR29093617 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096856 | MDR-TB | lineage2.2.1 | None | SRR29093891 | MDR-TB | lineage2.2.1 | None | SRR29093548 | MDR-TB | lineage2.2.1 | None | SRR3085345 | Pre-XDR-TB | lineage2.2.1 | None | SRR19427024 | Other | lineage4.3.3 | None | SRR29093294 | MDR-TB | lineage2.2.1 | None | SRR29056303 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096487 | MDR-TB | lineage2.2.1 | None | ERR4011063 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093583 | MDR-TB | lineage2.2.1 | None | SRR29093807 | MDR-TB | lineage2.2.1 | None | SRR29096216 | MDR-TB | lineage2.2.1 | None | ERR4797852 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29096302 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737942 | MDR-TB | lineage4.2.2.2 | None | ERR10748133 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093656 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093335 | MDR-TB | lineage2.2.1 | None | SRR29093537 | MDR-TB | lineage2.2.1 | None | ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093506 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025455 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034637 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011075 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231554 | MDR-TB | lineage4.3.3 | None | ERR7975660 | MDR-TB | lineage2.2.1 | None | SRR29096855 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093846 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093765 | XDR-TB | lineage2.2.1 | None | ERR9992618 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093655 | MDR-TB | lineage2.2.1 | None | SRR29094081 | MDR-TB | lineage2.2.1 | None | SRR1166227 | MDR-TB | lineage2.2.1 | None | SRR29096499 | MDR-TB | lineage2.2.1;lineage4.2.2.2 | None | SRR29093699 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093489 | MDR-TB | lineage2.2.1 | None | SRR29093763 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827461 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR29094051 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093259 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827958 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094019 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288994 | MDR-TB | lineage2.2.1 | None | SRR29093628 | MDR-TB | lineage2.2.1 | None | SRR10430372 | MDR-TB | lineage2.2.1 | None | SRR29096351 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829277 | MDR-TB | lineage2.2.1 | None | SRR22175240 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4800437 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR5987378 | MDR-TB | lineage2.2.1 | None | SAMN02584597 | MDR-TB | lineage2.2.1 | md | SRR6257099 | MDR-TB | lineage2.2.1 | None | ERR4831535 | XDR-TB | lineage2.2.1 | None | SRR29096596 | MDR-TB | lineage2.2.1 | None | SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None | SRR671767 | MDR-TB | lineage4.5 | cn | ERR10748299 | MDR-TB | lineage2.2.1 | None | SRR10303320 | MDR-TB | lineage2.2.1 | None | ERR11775030 | MDR-TB | lineage4.3.2.1 | None | SRR5306022 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911542 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911548 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911547 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | za | ERR4828703 | MDR-TB | lineage2.2.1 | vn | ERR7911553 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911611 | XDR-TB | lineage2.2.1 | za | ERR7911615 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911619 | Pre-XDR-TB | lineage2.2.1 | za | SRR1168994 | MDR-TB | lineage2.2.1 | None | ERR11774978 | MDR-TB | lineage2.2.1 | None | ERR7911653 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911652 | MDR-TB | lineage2.2.1 | za | ERR4829735 | MDR-TB | lineage4.1.2.1 | it | ERR7911664 | Pre-XDR-TB | lineage2.2.1 | za | ERR4832037 | MDR-TB | lineage2.2.1 | vn | ERR4830813 | MDR-TB | lineage4.2.2.2 | et | ERR8975774 | MDR-TB | lineage2.2.1 | None | ERR11774833 | MDR-TB | lineage2.2.1 | None | ERR3340710 | MDR-TB | lineage2.2.1;lineage4.1.1.3 | za | ERR1873447 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873556 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873470 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873474 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873562 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873509 | Pre-XDR-TB | lineage2.2.1 | za | SRR18715177 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289403 | XDR-TB | lineage2.2.1 | None | SRR29096347 | MDR-TB | lineage2.2.1 | None | ERR1034724 | MDR-TB | lineage4.1.2.1 | pe | SRR29096597 | MDR-TB | lineage2.2.1 | None | SRR29096513 | MDR-TB | lineage2.2.1 | None | ERR8025497 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112905 | MDR-TB | lineage2.2.1 | None | SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None | SRR5065497 | MDR-TB | lineage2.2.1 | vn | ERR4011077 | MDR-TB | lineage2.2.1 | None | ERR9119875 | MDR-TB | lineage2.2.1 | None | SRR5818581 | MDR-TB | lineage4.2.2.2 | dj | ERR9119983 | MDR-TB | lineage2.2.1 | None | SRR7645874 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR5865723 | MDR-TB | lineage2.2.1 | None | SRR29096772 | MDR-TB | lineage2.2.1 | None | SRR10869276 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025622 | HR-TB | lineage2.2.1 | None | ERR8975031 | MDR-TB | lineage2.2.1 | None | ERR13286097 | Pre-XDR-TB | lineage2.2.1 | None | ERR13286117 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288954 | XDR-TB | lineage2.2.1 | None | ERR4831584 | MDR-TB | lineage2.2.1 | None |
|---|
