ERR4011065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287741
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR16156798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737942
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR9119984
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748133
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911548
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8975714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873447
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29093506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093583
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8758881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287541
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9992618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748288
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827461
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR29096372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748114
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8.1
|
None
|
ERR7911547
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
za
|
ERR1023465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10303320
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5306022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1168994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515754
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5758371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093596
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289403
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4827912
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799380
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4011077
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119983
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096668
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873470
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR1873560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645874
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR5865723
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119713
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025496
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025622
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7911664
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR3082103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755705
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR29093636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034724
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR5865954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286137
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1873432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5818581
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
ERR10748240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380008
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288954
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1873556
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10869058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831536
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR3287372
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR16156802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911542
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR13288994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992778
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707153
|
MDR-TB
|
lineage4.3.3
|
cd
|
ERR4797852
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29093527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093827
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093617
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7975660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5758354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806878
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175230
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8025608
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156774
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829277
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094081
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2660450
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5065497
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR29096484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774833
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093807
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096597
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096513
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975774
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3082080
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29093548
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911611
|
XDR-TB
|
lineage2.2.1
|
za
|
SRR29093421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748379
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911653
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR3340710
|
MDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
za
|
ERR4011086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800437
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR5818638
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
ERR1034638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873562
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011058
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044952
|
MDR-TB
|
lineage3
|
None
|
SRR671767
|
MDR-TB
|
lineage4.5
|
cn
|
SRR29096298
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096596
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093628
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748382
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911619
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4423530
|
Other
|
lineage2.2.1
|
None
|
ERR4828703
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR19427024
|
Other
|
lineage4.3.3
|
None
|
ERR9807039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975031
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515371
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7975682
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096499
|
MDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR4829735
|
MDR-TB
|
lineage4.1.2.1
|
it
|
SAMN02584597
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR1166227
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911539
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911652
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR1034644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992782
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911526
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7975675
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10430372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096398
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025626
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873509
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR5987378
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257099
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831535
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911579
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
za
|
SRR29096799
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775030
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR13288928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774978
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096487
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093846
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093765
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29096839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873474
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29096347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112905
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119875
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4832019
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4832037
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR29093270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3082125
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29096827
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9030318
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3085334
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29093840
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830813
|
MDR-TB
|
lineage4.2.2.2
|
et
|
ERR6362178
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911553
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29096855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6879023
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3085359
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11798609
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911615
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29093757
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911557
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR10748349
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR8975808
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29096629
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865981
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4896313
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393278
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10112888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112885
|
MDR-TB
|
lineage2.2.1
|
None
|