Rv2043c - p.Thr47Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
5 RR-TB
2 HR-TB
98 MDR-TB
110 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 177 |
| lineage4.2.1 | 13 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1.1 | 6 |
| lineage1.2.2.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.8 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.1 | 5 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 216 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4828047 | MDR-TB | lineage2.2.1 | None | ERR11043688 | Pre-XDR-TB | lineage4.2.1 | None | SRR1723744 | RR-TB | lineage2.2.1 | cn | SRR1723568 | MDR-TB | lineage2.2.1 | cn | SRR1723619 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13267125 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162765 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290620 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093271 | MDR-TB | lineage4.1.1.1 | None | SRR25207075 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165377 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423589 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748409 | MDR-TB | lineage2.2.1.1 | None | SRR25340759 | MDR-TB | lineage1.2.2.2 | None | ERR13284694 | MDR-TB | lineage2.2.1 | None | SRR28859987 | MDR-TB | lineage2.2.1 | None | SRR7516320 | MDR-TB | lineage2.2.1 | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | ERR5866564 | MDR-TB | lineage2.2.1 | None | ERR11044128 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276200 | Pre-XDR-TB | lineage2.2.1 | None | ERR9030363 | MDR-TB | lineage1.1.2 | None | ERR13261996 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166919 | Pre-XDR-TB | lineage2.2.1 | None | SRR25340880 | MDR-TB | lineage1.2.2.2 | None | ERR13276212 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866452 | MDR-TB | lineage2.2.1 | None | SRR25515663 | Pre-XDR-TB | lineage2.2.1 | None | ERR027447 | MDR-TB | lineage2.2.1 | ru | SRR16370314 | MDR-TB | lineage2.2.1 | None | SRR29093936 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239991 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539498 | Pre-XDR-TB | lineage2.2.1 | None | SRR29914424 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797657 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR5864831 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165550 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055761 | MDR-TB | lineage2.2.1 | None | ERR551464 | MDR-TB | lineage2.2.1 | None | SAMN02414975 | Pre-XDR-TB | lineage2.2.1 | se | SRR8651576 | Pre-XDR-TB | lineage2.2.1 | cn | SRR671821 | Pre-XDR-TB | lineage2.2.1 | cn | SRR24256152 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810462 | MDR-TB | lineage2.2.1 | cn | SRR28045020 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11773842 | Pre-XDR-TB | lineage4.2.1 | None | SRR7249136 | MDR-TB | lineage2.2.1 | None | SRR27069395 | MDR-TB | lineage2.2.1 | None | SRR25827727 | MDR-TB | lineage2.2.1 | None | SRR24710283 | MDR-TB | lineage2.2.1 | None | SRR671770 | Pre-XDR-TB | lineage2.2.1 | cn | SAMEA2533963 | MDR-TB | lineage2.2.1 | uz | ERR552658 | MDR-TB | lineage2.2.1 | None | ERR234668 | MDR-TB | lineage2.2.1 | ru | ERR11043561 | MDR-TB | lineage2.2.1 | None | ERR13276195 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034822 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR29539220 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539734 | MDR-TB | lineage2.2.1 | None | ERR551411 | MDR-TB | lineage2.2.1 | None | SRR18714969 | MDR-TB | lineage2.2.1 | None | SRR18002884 | Pre-XDR-TB | lineage2.2.1 | None | ERR2677452 | Pre-XDR-TB | lineage4.2.1 | de | SRR11033644 | Pre-XDR-TB | lineage2.2.1 | None | SRR14270083 | MDR-TB | lineage2.2.1 | None | ERR9119552 | MDR-TB | lineage4.6.2.2 | None | ERR11068632 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379966 | MDR-TB | lineage4.2.1 | None | SRR1162812 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865457 | MDR-TB | lineage2.2.1 | None | SRR23938601 | HR-TB | lineage2.2.1 | None | ERR5865456 | MDR-TB | lineage2.2.1 | None | ERR4828998 | MDR-TB | lineage4.8 | it | ERR4811283 | Pre-XDR-TB | lineage2.2.1 | cn | SRR25207396 | RR-TB | lineage2.2.1 | None | ERR5864832 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284700 | MDR-TB | lineage2.2.1 | None | SRR16370691 | MDR-TB | lineage2.2.1 | None | SRR10397162 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276197 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088592 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055428 | MDR-TB | lineage2.2.1 | None | ERR5865273 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290618 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865455 | MDR-TB | lineage2.2.1 | None | ERR11044445 | Pre-XDR-TB | lineage4.2.1 | None | ERR5864835 | Pre-XDR-TB | lineage2.2.1 | None | SRR1167114 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044156 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972355 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538956 | MDR-TB | lineage2.2.1 | None | ERR13291449 | MDR-TB | lineage2.2.1 | None | SRR29385458 | XDR-TB | lineage2.2.1 | None | SRR1166878 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738537 | MDR-TB | lineage4.8 | None | ERR11043447 | MDR-TB | lineage2.2.1 | None | SRR16370459 | MDR-TB | lineage2.2.1 | None | SRR28351265 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR6831887 | MDR-TB | lineage2.2.1 | None | SRR29539815 | MDR-TB | lineage2.2.1 | None | ERR5866565 | MDR-TB | lineage2.2.1 | None | SRR8758895 | Pre-XDR-TB | lineage2.2.1 | None | SRR7249138 | MDR-TB | lineage2.2.1 | None | ERR11068071 | MDR-TB | lineage2.2.1 | None | SRR29539809 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045022 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13290621 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069404 | Pre-XDR-TB | lineage2.2.1 | None | SRR16089404 | MDR-TB | lineage2.2.1 | None | SRR11786860 | MDR-TB | lineage2.2.1 | None | ERR551412 | MDR-TB | lineage2.2.1 | None | SRR069945 | MDR-TB | lineage2.2.1 | None | ERR7911157 | MDR-TB | lineage2.2.1 | vn | ERR7911158 | MDR-TB | lineage2.2.1 | vn | ERR7911327 | MDR-TB | lineage2.1 | vn | ERR7911182 | MDR-TB | lineage2.2.1 | vn | ERR4822339 | Pre-XDR-TB | lineage2.2.1 | de | ERR7911408 | Pre-XDR-TB | lineage2.2.1 | us | SRR21685344 | MDR-TB | lineage2.2.1 | None | ERR12916906 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510684 | Pre-XDR-TB | lineage2.2.1 | it | SRR14782059 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SAMEA2533923 | MDR-TB | lineage2.2.1 | sl | ERR230008 | MDR-TB | lineage2.2.1 | ru | ERR2516598 | Pre-XDR-TB | lineage4.1.1 | pe | SRR6824680 | RR-TB | lineage2.2.1 | cn | SRR28351216 | Pre-XDR-TB | lineage4.2.1 | None | ERR11068264 | Pre-XDR-TB | lineage2.2.1 | None | ERR12544147 | MDR-TB | lineage2.2.1 | None | ERR4872150 | MDR-TB | lineage4.6.2.2 | None | SRR29681276 | MDR-TB | lineage2.2.1 | None | SRR29539110 | MDR-TB | lineage2.2.1 | None | SRR29539805 | Pre-XDR-TB | lineage2.2.1 | None | ERR551411_ERR551412 | MDR-TB | lineage2.2.1 | None | SRR15316403 | MDR-TB | lineage2.2.1 | None | SRR29539135 | MDR-TB | lineage4.3.3 | None | ERR108431 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR11043523 | Pre-XDR-TB | lineage2.2.1 | None | SRR24827310 | MDR-TB | lineage2.2.1 | None | ERR5864834 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865884 | Pre-XDR-TB | lineage2.2.1 | None | SRR28858523 | MDR-TB | lineage2.2.1 | None | ERR4828134 | MDR-TB | lineage2.2.1 | None | SRR16370325 | MDR-TB | lineage2.2.1 | None | ERR11798736 | MDR-TB | lineage4.2.1 | None | ERR11044092 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044161 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370545 | MDR-TB | lineage2.1 | None | SRR8758894 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243529 | Pre-XDR-TB | lineage2.2.1 | None | ERR015610 | MDR-TB | lineage2.2.1 | None | SRR25207216 | MDR-TB | lineage2.2.1 | None | SRR067482 | MDR-TB | lineage2.2.1 | None | SRR069949 | MDR-TB | lineage2.2.1 | None | SRR16370557 | MDR-TB | lineage2.2.1 | None | ERR13291193 | MDR-TB | lineage2.2.1 | None | SRR26399293 | MDR-TB | lineage2.1 | None | ERR551465_ERR551464 | MDR-TB | lineage2.2.1 | None | ERR13276315 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864833 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515509 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539532 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR29681245 | MDR-TB | lineage2.2.1 | None | SRR13423562 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539620 | Pre-XDR-TB | lineage2.2.1 | None | SRR23862109 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290619 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807547 | Pre-XDR-TB | lineage4.2.1 | None | ERR5865274 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539107 | MDR-TB | lineage2.2.1 | None | ERR5866451 | MDR-TB | lineage2.2.1 | None | ERR13276141 | Pre-XDR-TB | lineage4.2.1 | None | ERR7737907 | MDR-TB | lineage2.1 | None | SRR26936963 | MDR-TB | lineage2.1 | None | ERR11081597 | Pre-XDR-TB | lineage2.2.1 | None | SRR475257 | MDR-TB | lineage2.2.1 | None | ERR4831000 | MDR-TB | lineage2.2.1 | de | ERR4796444 | Pre-XDR-TB | lineage2.2.1 | in | SRR23310903 | Pre-XDR-TB | lineage4.2.1 | None | SAMN02414984 | Pre-XDR-TB | lineage2.2.1 | se | ERR5865271 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865458 | MDR-TB | lineage2.2.1 | None | ERR751700 | MDR-TB | lineage2.2.1 | th | ERR12790849 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762303 | Pre-XDR-TB | lineage4.2.1 | None | SRR5153311 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069423 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119743 | MDR-TB | lineage2.2.1.1 | None | ERR4811239 | RR-TB | lineage2.2.1 | None | ERR10762302 | Pre-XDR-TB | lineage4.2.1 | None | SRR6824559 | MDR-TB | lineage2.2.1 | cn | SRR6824379 | Pre-XDR-TB | lineage2.2.1 | cn | SRR10040364 | MDR-TB | lineage2.2.1 | None | SRR10306015 | RR-TB | lineage2.2.1 | None | ERR234566 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR25207397 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639762 | Pre-XDR-TB | lineage2.2.1 | None | ERR11773782 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069427 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276256 | Pre-XDR-TB | lineage4.2.1 | None | ERR11043209 | MDR-TB | lineage2.2.1 | None | SRR6831961 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069396 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165490 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785274 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865272 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043560 | MDR-TB | lineage2.2.1 | None | SRR5153820 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044096 | Pre-XDR-TB | lineage2.2.1 | None | SRR5338516 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866584 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243528 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715365 | MDR-TB | lineage2.2.1 | None | ERR11068190 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662137 | Pre-XDR-TB | lineage2.2.1.1 | None |
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