lineage | Count |
---|---|
lineage4.8 | 9 |
lineage4.2.2.2 | 1 |
lineage2.2.1 | 78 |
lineage4.8;lineage2.2.1 | 1 |
lineage3 | 11 |
lineage4.2.2 | 1 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.3.2 | 4 |
lineage4.3.2.1 | 5 |
lineage1.2.2.1 | 2 |
lineage4.5 | 3 |
1 | |
lineage2.2.1.1 | 25 |
lineage2.2 | 2 |
lineage4.3.3 | 5 |
lineage4.6.1.2 | 2 |
lineage4.6.4 | 2 |
lineage1.1.1.1 | 1 |
lineage4.3.4.2 | 3 |
lineage4.4.2 | 1 |
lineage4.1.2.1 | 1 |
lineage1.2.2.2 | 2 |
lineage3.1.2.1 | 1 |
lineage2.1 | 2 |
lineage3.1.1 | 1 |
lineage4.3.1 | 2 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage1.2.1.2 | 1 |
spoligotype | Count |
---|---|
None | 169 |
ID | Drug resistance | Lineage | Country iso2 | SRR3086352 | MDR-TB | lineage4.8 | None | SRR3105804 | Pre-XDR-TB | lineage4.2.2.2 | None | SAMEA2533458 | MDR-TB | lineage2.2.1 | uz | SRR1723828 | RR-TB | lineage2.2.1 | cn | ERR227974 | MDR-TB | lineage4.8;lineage2.2.1 | None | SRR2024992 | MDR-TB | lineage2.2.1 | cn | SAMN02414913 | MDR-TB | lineage3 | se | ERR3276269 | MDR-TB | lineage2.2.1 | nl | SAMEA2534128 | MDR-TB | lineage2.2.1 | uz | SRR5065397 | HR-TB | lineage2.2.1 | vn | ERR552954 | MDR-TB | lineage2.2.1 | de | ERR2510520 | Pre-XDR-TB | lineage4.2.2 | pk | SRR5067222 | MDR-TB | lineage2.2.1 | vn | ERR234613 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR234651 | MDR-TB | lineage2.2.1 | ru | ERR2510852 | MDR-TB | lineage4.8 | it | ERR234621 | MDR-TB | lineage2.2.1 | ru | SAMN02419592 | Pre-XDR-TB | lineage2.2.1 | by | SRR2024938 | MDR-TB | lineage2.2.1 | cn | SRR5065250 | MDR-TB | lineage2.2.1 | vn | SRR5152907 | MDR-TB | lineage2.2.1 | None | ERR2516732 | MDR-TB | lineage4.3.2 | pe | SAMEA2533636 | MDR-TB | lineage2.2.1 | uz | ERR2516582 | MDR-TB | lineage4.8 | nl | SAMN02585996 | MDR-TB | lineage4.3.2.1 | za | ERR2517086 | MDR-TB | lineage1.2.2.1 | gb | ERR4822402 | Pre-XDR-TB | lineage2.2.1 | ua | ERR2516802 | MDR-TB | lineage1.2.2.1 | gb | SAMN02419577 | Pre-XDR-TB | lineage2.2.1 | by | SRR5451699 | Other | lineage4.5 | None | SRR8791324 | MDR-TB | None | ERR4822403 | Pre-XDR-TB | lineage2.2.1 | ua | SRR5525997 | MDR-TB | lineage2.2.1.1 | None | SRR5526157 | MDR-TB | lineage2.2.1.1 | None | SRR5526360 | MDR-TB | lineage2.2.1.1 | None | SRR5525998 | MDR-TB | lineage2.2.1.1 | pg | SRR5526785 | MDR-TB | lineage2.2.1.1 | pg | SRR5526351 | MDR-TB | lineage2.2.1.1 | pg | SRR5526839 | MDR-TB | lineage2.2.1.1 | None | SRR5526865 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR5526842 | MDR-TB | lineage2.2.1.1 | pg | SRR5527200 | MDR-TB | lineage2.2.1.1 | None | SRR5526903 | MDR-TB | lineage2.2.1.1 | None | SRR5533176 | MDR-TB | lineage2.2.1.1 | None | SRR5533131 | MDR-TB | lineage2.2.1.1 | None | SRR5533249 | MDR-TB | lineage2.2.1.1 | pg | SRR5533143 | MDR-TB | lineage2.2.1.1 | None | SRR5549699 | MDR-TB | lineage2.2.1.1 | pg | SRR23310978 | MDR-TB | lineage2.2 | None | SRR5552415 | MDR-TB | lineage2.2.1.1 | pg | SRR23311048 | MDR-TB | lineage4.3.3 | None | ERR4827991 | MDR-TB | lineage2.2.1 | None | ERR2707038 | MDR-TB | lineage4.6.1.2 | cd | SRR5709902 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709870 | Pre-XDR-TB | lineage2.2.1 | th | SRR6079922 | MDR-TB | lineage2.2.1.1 | au | SRR6040100 | MDR-TB | lineage2.2.1.1 | au | ERR4828634 | HR-TB | lineage2.2.1 | vn | SAMEA2535218 | MDR-TB | lineage2.2.1 | uz | SRR6079967 | MDR-TB | lineage2.2.1.1 | au | SRR6117320 | MDR-TB | lineage2.2.1.1 | au | ERR4831959 | HR-TB | lineage2.2.1 | vn | SRR6785501 | MDR-TB | lineage2.2.1 | None | SRR6079930 | MDR-TB | lineage2.2.1.1 | au | SRR6117345 | MDR-TB | lineage2.2.1.1 | au | ERR4831983 | HR-TB | lineage2.2.1 | vn | ERR4872075 | MDR-TB | lineage4.6.4 | None | ERR4972572 | MDR-TB | lineage4.3.3 | None | SRR6785464 | MDR-TB | lineage2.2.1 | None | SRR6832452 | MDR-TB | lineage2.2.1 | None | ERR10680180 | MDR-TB | lineage4.8 | None | SRR9224938 | MDR-TB | lineage4.3.2 | None | SRR9224943 | MDR-TB | lineage4.3.2 | None | DRR130061 | MDR-TB | lineage2.2.1.1 | None | ERR502936 | RR-TB | lineage2.2.1 | None | ERR1035096 | Pre-XDR-TB | lineage1.1.1.1 | vn | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR10762434 | MDR-TB | lineage4.3.3 | None | ERR10762265 | Pre-XDR-TB | lineage4.3.3 | None | ERR11043484 | MDR-TB | lineage2.2.1 | None | ERR1199099 | MDR-TB | lineage4.6.1.2 | cd | ERR3256126 | MDR-TB | lineage4.3.4.2 | ph | ERR133901 | Pre-XDR-TB | lineage2.2.1 | ru | ERR137243 | Pre-XDR-TB | lineage2.2.1 | ru | ERR144572 | MDR-TB | lineage2.2.1 | ru | ERR3794447 | Pre-XDR-TB | lineage2.2.1 | None | ERR3273114 | MDR-TB | lineage4.4.2 | None | ERR3273213 | MDR-TB | lineage2.2.1 | None | ERR3287756 | RR-TB | lineage4.1.2.1 | pe | ERR3794383 | MDR-TB | lineage2.2.1 | None | ERR3794485 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798166 | MDR-TB | lineage3 | in | ERR3794534 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796572 | Pre-XDR-TB | lineage3 | in | ERR4796813 | Pre-XDR-TB | lineage2.2.1 | in | ERR3794499 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797807 | MDR-TB | lineage1.2.2.2 | in | ERR5865730 | MDR-TB | lineage2.2.1 | None | ERR4799054 | MDR-TB | lineage1.2.2.2 | in | ERR4799128 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR5866176 | MDR-TB | lineage2.2.1 | None | ERR5865811 | MDR-TB | lineage2.2.1 | None | ERR5865812 | MDR-TB | lineage2.2.1 | None | ERR5866106 | MDR-TB | lineage2.2.1 | None | ERR5866174 | MDR-TB | lineage2.2.1 | None | ERR5865729 | MDR-TB | lineage2.2.1 | None | ERR5865752 | MDR-TB | lineage2.2.1 | None | ERR5865753 | MDR-TB | lineage2.2.1 | None | ERR5866107 | MDR-TB | lineage2.2.1 | None | ERR5866175 | MDR-TB | lineage2.2.1 | None | ERR7737678 | MDR-TB | lineage2.1 | None | ERR5866538 | MDR-TB | lineage2.2 | None | ERR5866539 | MDR-TB | lineage2.2.1 | None | ERR5897083 | Pre-XDR-TB | lineage3 | None | ERR9119481 | MDR-TB | lineage4.6.4 | None | ERR7737765 | MDR-TB | lineage3.1.1 | None | ERR7911277 | MDR-TB | lineage2.1 | vn | ERR7911322 | MDR-TB | lineage2.2.1.1 | vn | ERR8665614 | MDR-TB | lineage2.2.1 | None | SRR10430342 | MDR-TB | lineage2.2.1 | None | ERR9125123 | Pre-XDR-TB | lineage3 | None | SRR10303345 | MDR-TB | lineage2.2.1 | None | SRR070017 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303313 | MDR-TB | lineage2.2.1 | None | SRR10430398 | MDR-TB | lineage2.2.1 | None | SRR1144740 | MDR-TB | lineage3 | None | SRR1163175 | MDR-TB | lineage3 | None | SRR1146375 | MDR-TB | lineage3 | None | SRR1158943 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162509 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163382 | MDR-TB | lineage3 | None | SRR1172865 | MDR-TB | lineage4.3.2.1 | None | SRR1175092 | MDR-TB | lineage4.3.2.1 | None | SRR1180990 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972157 | MDR-TB | lineage2.2.1 | None | SRR1181074 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184127 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184325 | MDR-TB | lineage4.3.2.1 | None | SRR1196552 | MDR-TB | lineage4.3.2.1 | None | SRR1181309 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180281 | MDR-TB | lineage2.2.1 | None | SRR12142433 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583413 | MDR-TB | lineage4.3.2 | None | SRR13232643 | MDR-TB | lineage2.2.1 | None | SRR13583427 | MDR-TB | lineage4.3.4.2 | None | ERR11050532 | MDR-TB | lineage4.3.1 | None | SRR13583435 | MDR-TB | lineage4.3.4.2 | None | SRR18715342 | MDR-TB | lineage2.2.1 | None | ERR11050531 | MDR-TB | lineage4.3.1 | None | SRR18002914 | RR-TB | lineage2.2.1 | None | SRR18715079 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782658 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR15368990 | Pre-XDR-TB | lineage4.5 | None | SRR16058593 | Pre-XDR-TB | lineage3 | None | SRR18714928 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576603 | MDR-TB | lineage1.2.1.2 | None | SRR21277279 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277578 | Pre-XDR-TB | lineage4.5 | None | SRR21747040 | MDR-TB | lineage2.2.1 | None | SRR22424926 | Pre-XDR-TB | lineage3 | None | ERR11080837 | Pre-XDR-TB | lineage4.8 | None | ERR11081427 | HR-TB | lineage2.2.1 | None | ERR11082417 | HR-TB | lineage2.2.1 | None | SRR23691320 | MDR-TB | lineage2.2.1 | None | ERR9806651 | MDR-TB | lineage4.8 | None | ERR10610215 | MDR-TB | lineage4.8 | None | SRR21887721 | Pre-XDR-TB | lineage2.2.1 | None | ERR1465875 | MDR-TB | lineage4.8 | None | SRR3085260 | MDR-TB | lineage4.8 | None |
---|