lineage | Count |
---|---|
lineage4.1.3 | 4 |
lineage2.2.1 | 59 |
lineage4.1.2.1 | 1 |
lineage4.4.1.1;lineage4.3.2.1 | 1 |
lineage2.2.2 | 2 |
lineage2.2 | 3 |
lineage4.8 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1 | 1 |
spoligotype | Count |
---|---|
None | 73 |
ID | Drug resistance | Lineage | Country iso2 | SRR998689 | HR-TB | lineage4.1.3 | None | ERR029210 | MDR-TB | lineage2.2.1 | nl | ERR10680217 | MDR-TB | lineage4.1.2.1 | None | ERR1035070 | Pre-XDR-TB | lineage4.4.1.1;lineage4.3.2.1 | za | ERR10748451 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748279 | MDR-TB | lineage2.2.1 | None | ERR10748379 | MDR-TB | lineage2.2.1 | None | ERR10748427 | MDR-TB | lineage2.2.1 | None | ERR4011071 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911695 | Pre-XDR-TB | lineage2.2.1 | za | ERR4011068 | MDR-TB | lineage2.2.1 | None | ERR7911214 | MDR-TB | lineage2.2.1 | za | ERR7911691 | MDR-TB | lineage2.2.1 | za | SRR1011478 | MDR-TB | lineage2.2.1 | None | ERR7911705 | Pre-XDR-TB | lineage2.2.1 | za | ERR8976116 | MDR-TB | lineage2.2.1 | None | ERR9993108 | Pre-XDR-TB | lineage2.2.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1011482 | MDR-TB | lineage2.2.1 | None | SRR1062853 | MDR-TB | lineage2.2.1 | None | SRR10869187 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062849 | MDR-TB | lineage2.2.1 | None | SRR10869140 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869034 | Pre-XDR-TB | lineage2.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR10869208 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869292 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349132 | MDR-TB | lineage2.2.1 | None | SRR11342661 | MDR-TB | lineage2.2.1 | None | SRR1165255 | MDR-TB | lineage2.2.1 | None | SRR1165257 | MDR-TB | lineage2.2.1 | None | SRR16156202 | MDR-TB | lineage2.2.1 | None | SRR1167301 | MDR-TB | lineage2.2.1 | None | SRR1173494 | MDR-TB | lineage2.2.1 | None | SRR1173600 | MDR-TB | lineage2.2.1 | None | SRR1167302 | MDR-TB | lineage2.2.1 | None | SRR1173327 | MDR-TB | lineage2.2.1 | None | SRR1173723 | MDR-TB | lineage2.2.1 | None | SRR16156208 | MDR-TB | lineage2.2.1 | None | SRR16156203 | MDR-TB | lineage2.2.1 | None | SRR16156209 | MDR-TB | lineage2.2.1 | None | SRR16156204 | MDR-TB | lineage2.2.1 | None | SRR16156268 | MDR-TB | lineage2.2.1 | None | SRR16156258 | MDR-TB | lineage2.2.1 | None | SRR16156220 | MDR-TB | lineage2.2.1 | None | ERR8025536 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156295 | MDR-TB | lineage2.2.1 | None | ERR8025442 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082824 | RR-TB | lineage4.8 | None | ERR8025482 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025555 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806915 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025572 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025525 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025444 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806936 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723877 | MDR-TB | lineage2.2.1 | cn | SAMN02350436 | MDR-TB | lineage2.2.1 | za | SRR2024925 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5065415 | HR-TB | lineage1.1.1.1 | vn | SAMN02398710 | MDR-TB | lineage2.2.2 | None | ERR2516516 | MDR-TB | lineage2.2.1 | nl | SRR998796 | MDR-TB | lineage4.1.3 | None | ERR2515660 | Pre-XDR-TB | lineage2.2.1 | za | SAMN02403527 | MDR-TB | lineage2.2.1 | za | SRR23311022 | MDR-TB | lineage2.2 | None | SRR23340133 | MDR-TB | lineage2.2 | None | SAMN02403526 | MDR-TB | lineage2.2.1 | za | SRR6824521 | MDR-TB | lineage2.2.1 | cn | SRR998797 | MDR-TB | lineage4.1.3 | None | SRR998799 | MDR-TB | lineage4.1 | None | SRR998798 | MDR-TB | lineage4.1.3 | None | SAMN02350439 | MDR-TB | lineage2.2.1 | za |
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