lineage | Count |
---|---|
lineage2.2.1 | 48 |
lineage4.2.2.2 | 5 |
lineage4.8.1 | 2 |
lineage4.6.1.2 | 2 |
lineage2.2.2 | 3 |
lineage4.3.3 | 3 |
lineage4.3.4.2 | 5 |
lineage4.1.2 | 1 |
lineage4.9 | 3 |
lineage4.2.1 | 5 |
lineage4.3.2 | 3 |
lineage4.5 | 3 |
lineage3 | 9 |
lineage1.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3 | 1 |
lineage5.1.5 | 1 |
lineage4.6.2.2 | 1 |
lineage4.1.2.1 | 1 |
lineage3.1.2.1 | 1 |
lineage4.8 | 1 |
spoligotype | Count |
---|---|
None | 100 |
ID | Drug resistance | Lineage | Country iso2 | ERR987746 | MDR-TB | lineage2.2.1 | None | ERR8774574 | Pre-XDR-TB | lineage2.2.1 | None | ERR9125001 | MDR-TB | lineage4.2.2.2 | None | ERR9907685 | MDR-TB | lineage4.8.1 | None | ERR987760 | MDR-TB | lineage2.2.1 | None | ERR987756 | MDR-TB | lineage2.2.1 | None | ERR987786 | MDR-TB | lineage4.6.1.2 | None | SRR1020013 | Pre-XDR-TB | lineage2.2.2 | None | SRR1020014 | Pre-XDR-TB | lineage2.2.2 | None | ERR9907755 | Pre-XDR-TB | lineage4.8.1 | None | SRR12830381 | Other | lineage4.3.3 | None | SRR10303321 | MDR-TB | lineage2.2.1 | None | SRR11348147 | MDR-TB | lineage4.3.4.2 | None | SRR11348143 | MDR-TB | lineage4.3.4.2 | None | SRR10430371 | MDR-TB | lineage2.2.1 | None | SRR11348141 | MDR-TB | lineage4.3.4.2 | None | SRR13312528 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782110 | MDR-TB | lineage2.2.1 | None | SRR13312529 | MDR-TB | lineage2.2.1 | None | SRR13312523 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583519 | MDR-TB | lineage4.1.2 | None | SRR13312524 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312527 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312526 | Pre-XDR-TB | lineage2.2.1 | None | SRR18593212 | MDR-TB | lineage4.9 | None | SRR15014681 | MDR-TB | lineage4.3.4.2 | None | SRR15014758 | Pre-XDR-TB | lineage4.9 | None | SRR15014781 | MDR-TB | lineage4.3.4.2 | None | SRR24256139 | MDR-TB | lineage2.2.1 | None | SRR14801458 | Pre-XDR-TB | lineage4.2.1 | None | SRR16058171 | MDR-TB | lineage4.2.2.2 | None | SRR17234901 | MDR-TB | lineage4.3.2 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR25206941 | RR-TB | lineage4.5 | None | SRR18715101 | MDR-TB | lineage2.2.1 | None | SRR18715037 | MDR-TB | lineage2.2.1 | None | SRR25515200 | Pre-XDR-TB | lineage2.2.1 | None | SRR21736366 | MDR-TB | lineage2.2.1 | None | SRR26399744 | HR-TB | lineage2.2.1 | None | SRR22424930 | Pre-XDR-TB | lineage4.9 | None | ERR11068012 | MDR-TB | lineage2.2.1 | None | SRR6797645 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424935 | Pre-XDR-TB | lineage3 | None | ERR11082575 | MDR-TB | lineage2.2.2 | None | SRR8380946 | MDR-TB | lineage1.1.2 | in | SRR5341311 | Pre-XDR-TB | lineage3 | in | SRR671750 | Pre-XDR-TB | lineage4.5 | cn | SRR6824447 | MDR-TB | lineage2.2.1 | cn | ERR751466 | MDR-TB | lineage4.1.1.3 | pe | ERR4812818 | MDR-TB | lineage4.3.2 | None | ERR4812846 | MDR-TB | lineage4.3 | None | ERR038746 | MDR-TB | lineage2.2.1 | ug | SRR5153322 | MDR-TB | lineage2.2.1 | None | ERR1199137 | MDR-TB | lineage4.6.1.2 | ug | ERR3335738 | MDR-TB | lineage2.2.1 | pk | SRR5153929 | Pre-XDR-TB | lineage4.2.1 | None | ERR552427 | HR-TB | lineage5.1.5 | None | SRR5535831 | MDR-TB | lineage4.6.2.2 | None | ERR552934 | MDR-TB | lineage2.2.1 | cg | ERR4798130 | Pre-XDR-TB | lineage3 | in | ERR4829857 | MDR-TB | lineage2.2.1 | it | ERR3335742 | MDR-TB | lineage2.2.1 | pk | ERR3335791 | Pre-XDR-TB | lineage2.2.1 | pk | ERR4811305 | RR-TB | lineage4.5 | cn | ERR3335765 | Pre-XDR-TB | lineage3 | pk | ERR3335778 | Pre-XDR-TB | lineage3 | pk | SRR6485080 | HR-TB | lineage4.1.2.1 | None | ERR4813198 | Pre-XDR-TB | lineage4.3.2 | pe | DRR454963 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516340 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510306 | Pre-XDR-TB | lineage4.2.2.2 | pk | ERR2510503 | MDR-TB | lineage3 | pk | ERR3287813 | MDR-TB | lineage4.3.3 | pe | ERR2510393 | Pre-XDR-TB | lineage3.1.2.1 | pk | ERR2510399 | Pre-XDR-TB | lineage3 | pk | SRR7755697 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755690 | Pre-XDR-TB | lineage4.2.1 | None | DRR130052 | MDR-TB | lineage2.2.1 | None | ERR10762369 | Pre-XDR-TB | lineage4.2.1 | None | ERR10762408 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800390 | MDR-TB | lineage4.3.3 | None | ERR4553765 | MDR-TB | lineage4.8 | None | ERR4828631 | HR-TB | lineage2.2.1 | vn | ERR3335798 | MDR-TB | lineage2.2.1 | None | ERR3639754 | MDR-TB | lineage2.2.1 | None | ERR4553901 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866006 | MDR-TB | lineage2.2.1 | None | ERR8975797 | RR-TB | lineage2.2.1 | None | ERR5866007 | MDR-TB | lineage2.2.1 | None | ERR4831435 | Pre-XDR-TB | lineage3 | None | ERR5866459 | MDR-TB | lineage2.2.1 | None | ERR5866458 | MDR-TB | lineage2.2.1 | None | ERR5897102 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359002 | MDR-TB | lineage2.2.1 | None | ERR7737707 | MDR-TB | lineage4.2.2.2 | None | ERR6397151 | MDR-TB | lineage4.2.2.2 | None | SRR26936976 | MDR-TB | lineage2.2.1 | None | SRR26937035 | Pre-XDR-TB | lineage2.2.1 | None | ERR2145493 | MDR-TB | lineage3 | None | ERR7910924 | Pre-XDR-TB | lineage2.2.1 | None |
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