Rv2416c - c.-100C>T

Drug resistance types
337 Sensitive 3 RR-TB 15 HR-TB 34 MDR-TB 10 Pre-XDR-TB 0 XDR-TB 45 Other
lineage Counts
lineage Count
lineage4.4.1.1 1
lineage4.3.3 31
lineage3.1.2 48
lineage4.1.2 4
lineage4.2.1 1
lineage4.3.3;lineage4.3.2 1
lineage3 182
lineage2.2.1 70
lineage4.8 16
lineage4.9 1
lineage4.3.3;lineage2.2.1.1 1
lineage4.7 12
lineage6.3.1 1
lineage4.3.2 15
lineage4.6.2.2 1
lineage4.1.2.1 25
lineage1.1.2 1
lineage4.4.2 1
lineage4.5 5
lineage2.2 2
lineage1.1.1.1 3
lineage1. 1
lineage4.4 1
La1.7.1 1
lineage4.3.4.2 3
lineage4.1.1 2
lineage2.2.2 1
lineage4.8;lineage3 1
lineage4.3.3;lineage4.1.2.1 1
lineage4.6.5 1
lineage3.1 1
lineage4 1
lineage4.3 1
lineage4.9;lineage3.1.2 1
lineage4.6.1.2;lineage4.3.3 1
lineage4.1 1
lineage4.1.1.3 1
lineage1.2.2.2 1
spoligotype Counts
spoligotype Count
None 444
Geographic prevalence
Country level data for this variant is available for 161 isolates.
Statisctical support
Not enough data to calculate support.
ID Drug resistance Lineage Country iso2
SRR6896340 HR-TB lineage4.4.1.1 None
SRR6981981 Other lineage4.3.3 None
SRR6797752 Sensitive lineage3.1.2 None
SRR6981954 Sensitive lineage4.3.3 None
ERR294273 Other lineage4.1.2 None
ERR3132122 HR-TB lineage4.2.1 None
SRR9224952 Sensitive lineage4.3.3;lineage4.3.2 None
ERR3275648 Sensitive lineage3 nl
SRR7131160 Sensitive lineage3 None
DRR130227 Other lineage2.2.1 None
SRR7276690 Sensitive lineage4.3.3 None
SRR7276703 Sensitive lineage4.3.3 None
ERR11067440 Sensitive lineage3 None
DRR034489 Other lineage2.2.1 None
SRR7131228 Sensitive lineage4.8 None
SRR7645816 Sensitive lineage4.8 None
SRR2024882 MDR-TB lineage2.2.1 cn
DRR034488 Sensitive lineage4.9 None
DRR189117 RR-TB lineage2.2.1 None
DRR188513 Sensitive lineage2.2.1 None
DRR188814 Sensitive lineage2.2.1 None
ERR1034927 Sensitive lineage4.3.3 za
ERR11049067 Sensitive lineage3 None
ERR072022 Sensitive lineage3 gb
ERR072021 Sensitive lineage3 gb
ERR10465836 Sensitive lineage3 None
ERR1034969 Sensitive lineage4.3.3 za
ERR1035009 MDR-TB lineage4.3.3 za
ERR1035289 Pre-XDR-TB lineage4.3.3 br
ERR10465810 Sensitive lineage3 None
ERR10465830 Sensitive lineage3 None
ERR10465845 Sensitive lineage3 None
ERR10465758 Sensitive lineage3 None
ERR10465824 Sensitive lineage3 None
ERR10465893 Sensitive lineage3 None
ERR10465882 Sensitive lineage3 None
ERR11044022 Sensitive lineage3 None
ERR10465915 Sensitive lineage3 None
ERR10465946 Sensitive lineage3 None
ERR108127 Sensitive lineage4.3.3;lineage2.2.1.1 za
ERR11043104 Sensitive lineage3 None
ERR11043273 Sensitive lineage4.7 None
ERR11043902 Sensitive lineage4.7 None
ERR10465908 Sensitive lineage3 None
ERR10465932 Sensitive lineage3 None
ERR10748413 MDR-TB lineage4.3.3 None
ERR11043949 Sensitive lineage3 None
ERR11044140 Sensitive lineage3 None
ERR11044512 Sensitive lineage3 None
ERR11044255 Sensitive lineage4.7 None
ERR11044427 Sensitive lineage3 None
ERR11044198 Sensitive lineage3 None
ERR11044438 Sensitive lineage3 None
ERR11044511 Sensitive lineage3 None
ERR11044619 Sensitive lineage3 None
ERR11044543 Sensitive lineage3 None
ERR11044562 Other lineage3 None
ERR11044563 Sensitive lineage3 None
ERR11044735 Sensitive lineage3 None
ERR11044628 Sensitive lineage3 None
ERR11044723 Sensitive lineage3 None
ERR11044872 Sensitive lineage3 None
ERR11044873 Sensitive lineage3 None
ERR11044805 Sensitive lineage3 None
ERR11044894 Sensitive lineage3 None
ERR11044886 Sensitive lineage3 None
ERR11044893 Sensitive lineage3 None
ERR11044895 Sensitive lineage3 None
ERR11044911 Sensitive lineage3 None
ERR114435 Sensitive lineage3.1.2 None
ERR1215460 Sensitive lineage6.3.1 gh
ERR117669 Sensitive lineage3 None
ERR1193672 Sensitive lineage4.3.2 ch
ERR3256116 Sensitive lineage2.2.1 ph
ERR123910 Sensitive lineage3.1.2 None
ERR3470540 Sensitive lineage3 None
ERR3470575 Sensitive lineage3 None
ERR3470562 Sensitive lineage3 None
ERR3470558 Sensitive lineage3 None
ERR3470584 Sensitive lineage3 None
ERR3470599 Sensitive lineage3 None
ERR3470592 Sensitive lineage3 None
ERR3470621 Other lineage3 None
ERR3470591 Sensitive lineage3 None
ERR3470622 Sensitive lineage3 None
ERR3470616 Sensitive lineage3 None
ERR3470677 MDR-TB lineage3 None
ERR3470643 Sensitive lineage3 None
ERR3470644 Sensitive lineage3 None
ERR3470669 Sensitive lineage3 None
ERR3470680 Sensitive lineage3 None
ERR3470649 Sensitive lineage3 None
ERR3470679 Sensitive lineage3 None
ERR386921 Sensitive lineage3.1.2 None
ERR3470691 MDR-TB lineage3 None
ERR400364 Sensitive lineage4.8 gb
ERR3957944 Sensitive lineage4.3.3 None
ERR387022 Sensitive lineage3.1.2 None
ERR4407470 HR-TB lineage4.6.2.2 None
ERR4024775 Sensitive lineage4.1.2.1 None
ERR4025063 Sensitive lineage4.3.3 None
ERR403365 Sensitive lineage3.1.2 None
ERR4178106 Sensitive lineage4.1.2.1 None
ERR433208 Sensitive lineage3.1.2 None
ERR400462 Sensitive lineage4.8 gb
ERR403393 Sensitive lineage3.1.2 None
ERR4132450 MDR-TB lineage4.3.3 None
ERR4195457 MDR-TB lineage2.2.1 None
ERR4407446 Sensitive lineage3 None
ERR473340 Sensitive lineage1.1.2 None
ERR4407534 Sensitive lineage3 None
ERR4457797 Sensitive lineage4.3.3 None
ERR4799191 Sensitive lineage3.1.2 in
ERR11049532 Sensitive lineage3 None
ERR11049514 Sensitive lineage3 None
ERR4800550 Sensitive lineage3.1.2 None
ERR4799963 Sensitive lineage3.1.2 in
ERR4810722 Other lineage2.2.1 cn
ERR4810721 Other lineage2.2.1 None
ERR4810723 Other lineage2.2.1 cn
ERR4811027 Other lineage2.2.1 cn
ERR4810942 MDR-TB lineage2.2.1 cn
ERR4811885 Sensitive lineage4.3.3 pe
ERR4811193 HR-TB lineage4.4.2 cn
ERR4811028 Other lineage2.2.1 None
ERR4811029 Other lineage2.2.1 cn
ERR4811215 Sensitive lineage4.5 None
ERR11049903 Sensitive lineage3 None
ERR4812594 MDR-TB lineage4.1.2.1 pe
ERR5979427 Other lineage3 None
ERR5979465 Sensitive lineage3 None
ERR6865340 Sensitive lineage4.1.2.1 None
ERR6866577 Sensitive lineage4.3.2 None
ERR6865984 Sensitive lineage4.1.2.1 None
ERR6866516 Sensitive lineage4.3.3 None
ERR718272 Sensitive lineage2.2.1 th
ERR718212 Sensitive lineage2.2.1 th
ERR751577 MDR-TB lineage4.1.2.1 pe
ERR718300 Sensitive lineage2.2.1 th
ERR718496 Sensitive lineage2.2.1 th
ERR718526 Sensitive lineage2.2.1 th
ERR718304 Sensitive lineage2.2.1 th
ERR718457 Sensitive lineage2.2.1 th
ERR718479 Sensitive lineage2.2.1 th
ERR718490 Sensitive lineage2.2.1 th
ERR751636 Sensitive lineage2.2.1 th
ERR751649 Sensitive lineage2.2.1 th
ERR751640 Other lineage2.2.1 th
ERR751632 MDR-TB lineage4.1.2.1 pe
ERR751658 Sensitive lineage2.2.1 th
ERR751763 Sensitive lineage2.2.1 th
ERR751674 Sensitive lineage2.2.1 th
ERR752115 Sensitive lineage2.2.1 th
ERR751828 Other lineage2.2.1 th
ERR751858 Sensitive lineage2.2.1 th
ERR752056 Sensitive lineage2.2.1 th
ERR751809 Sensitive lineage2.2.1 th
ERR751864 Sensitive lineage2.2.1 th
ERR752033 Sensitive lineage2.2.1 th
ERR752125 Sensitive lineage2.2.1 th
ERR752223 Sensitive lineage2.2.1 th
ERR752142 Sensitive lineage2.2.1 th
ERR752200 Sensitive lineage2.2.1 th
ERR752264 Other lineage2.2.1 th
ERR752227 Sensitive lineage2.2.1 th
ERR752261 Sensitive lineage2.2.1 th
ERR752266 Sensitive lineage2.2.1 th
ERR779920 MDR-TB lineage4.1.2.1 pe
ERR752288 Sensitive lineage2.2.1 th
ERR767974 Sensitive lineage2.2.1 th
ERR767970 Sensitive lineage2.2.1 th
ERR767989 Sensitive lineage2.2.1 th
ERR768020 Sensitive lineage2.2.1 th
ERR779924 MDR-TB lineage4.1.2.1 pe
ERR9117682 Sensitive lineage3 None
ERR11050025 Sensitive lineage3 None
ERR8975141 Sensitive lineage2.2 None
ERR11050043 Sensitive lineage3 None
ERR7910892 MDR-TB lineage4.1.2.1 pe
ERR9121123 MDR-TB lineage2.2.1 None
ERR9119331 Sensitive lineage1.1.1.1 None
ERR9125146 Sensitive lineage3 None
ERR9125205 Sensitive lineage4.8 None
ERR9125683 Sensitive lineage2.2.1 None
ERR9125219 Sensitive lineage4.8 None
ERR9125410 Sensitive lineage3 None
ERR9125684 Sensitive lineage2.2.1 None
ERR9125216 Sensitive lineage3 None
ERR987736 MDR-TB lineage3 None
ERR987708 MDR-TB lineage3 None
SRR10808461 Sensitive lineage4.1.2.1 None
SRR10851643 Sensitive lineage4.3.3 None
ERR11050254 Sensitive lineage3 None
ERR11050272 Sensitive lineage1.1.1.1 None
SRR10851656 Sensitive lineage4.3.3 None
SRR11972369 Pre-XDR-TB lineage2.2.1 None
ERR11050445 Sensitive lineage3 None
SRR12882268 Sensitive lineage3 None
SRR12199379 Sensitive lineage2.2.1 None
SRR12199382 Sensitive lineage2.2.1 None
SRR12199481 Sensitive lineage2.2.1 None
SRR12882057 Sensitive lineage3 None
SRR12882256 Sensitive lineage3 None
SRR12882270 Sensitive lineage3 None
SRR12882269 Sensitive lineage3 None
SRR14164859 Sensitive lineage4.3.3 None
SRR13180356 Other lineage3 None
SRR13232468 Pre-XDR-TB lineage2.2.1 None
ERR11067649 Sensitive lineage3 None
SRR16057900 Sensitive lineage3 None
SRR14164891 Sensitive lineage4.3.3 None
SRR14519817 Sensitive lineage3 None
SRR14519847 Sensitive lineage4.1.2.1 None
SRR16057894 Sensitive lineage4.8 None
ERR11050702 Sensitive lineage3 None
SRR16058095 Sensitive lineage3 None
SRR16058325 Sensitive lineage3 None
SRR16058346 Sensitive lineage2.2.1 None
SRR16089628 HR-TB lineage1. None
SRR16058345 Sensitive lineage2.2.1 None
SRR16099304 Sensitive lineage4.3.2 None
SRR16370323 Other lineage3 None
SRR16370583 Sensitive lineage4.3.2 None
SRR16370466 MDR-TB lineage4.1.2.1 None
SRR18213958 Sensitive lineage4.4 None
SRR17406760 Sensitive lineage3.1.2 None
SRR17732476 Sensitive lineage2.2.1 None
SRR17856676 Sensitive lineage3.1.2 None
SRR18213782 Sensitive lineage3 None
SRR17406775 Sensitive lineage3.1.2 None
SRR17732867 Sensitive lineage2.2.1 None
SRR18213815 Sensitive lineage3.1.2 None
ERR11050755 Sensitive lineage3 None
SRR18909925 Sensitive lineage4.3.2 None
SRR18391732 Other La1.7.1 None
SRR2100737 Sensitive lineage3.1.2 None
SRR19304015 Sensitive lineage3 None
SRR19317600 Sensitive lineage4.3.2 None
SRR20969982 Pre-XDR-TB lineage2.2.1 None
SRR2100233 Sensitive lineage3 None
SRR2100474 Sensitive lineage3.1.2 None
ERR11050779 Sensitive lineage4.5 None
SRR18912073 Sensitive lineage4.1.2.1 None
SRR2100152 Sensitive lineage3.1.2 None
SRR2100284 Sensitive lineage3.1.2 None
SRR2100731 Sensitive lineage3.1.2 None
SRR2101061 Other lineage4.1.2 None
SRR2100773 Sensitive lineage3.1.2 None
SRR2100797 Sensitive lineage3.1.2 None
SRR21659821 HR-TB lineage4.3.2 None
SRR2101406 Sensitive lineage4.3.3 None
SRR21595730 HR-TB lineage3.1.2 None
SRR21657651 Sensitive lineage4.3.4.2 None
SRR21677866 HR-TB lineage4.8 None
SRR21662760 Sensitive lineage4.1.2.1 None
SRR21661631 Sensitive lineage4.1.1 None
SRR21677067 Sensitive lineage4.1.2.1 None
SRR21677857 Other lineage4.8 None
SRR21677933 Sensitive lineage4.1.2.1 None
ERR11068207 Sensitive lineage3 None
SRR21708941 Sensitive lineage4.3.2 None
SRR21714051 Sensitive lineage4.3.2 None
SRR21727578 Sensitive lineage4.3.2 None
SRR21736383 Sensitive lineage4.1.1 None
ERR11067701 Sensitive lineage3 None
ERR11068004 Sensitive lineage3 None
ERR11068033 Sensitive lineage3 None
SRR22424848 HR-TB lineage3.1.2 None
SRR22424918 RR-TB lineage3.1.2 None
ERR11067845 Sensitive lineage3 None
ERR11068275 MDR-TB lineage3 None
ERR11068217 Sensitive lineage3 None
ERR11069080 MDR-TB lineage3 None
ERR11068801 Sensitive lineage3 None
ERR11068936 Other lineage3 None
ERR11081353 Sensitive lineage3 None
ERR11080874 Sensitive lineage3 None
ERR11081288 Sensitive lineage3 None
ERR11081069 Other lineage3 None
ERR11081598 Sensitive lineage4.7 None
ERR4814665 Sensitive lineage3 None
ERR11081601 MDR-TB lineage3 None
ERR11081614 Sensitive lineage3 None
ERR11081835 Sensitive lineage4.7 None
ERR11081856 Sensitive lineage4.7 None
ERR11082102 Sensitive lineage4.7 None
ERR11082642 Sensitive lineage3 None
ERR11082987 Sensitive lineage4.8 None
ERR7363055 Sensitive lineage4.3.3 None
SRR14519156 Sensitive lineage2.2.2 None
SRR6207292 MDR-TB lineage4.1.2 None
ERR4814388 Sensitive lineage3 gb
ERR4814402 Sensitive lineage4.8;lineage3 gb
ERR11081957 Sensitive lineage4.3.3 None
ERR11082739 Sensitive lineage4.7 None
ERR11083148 Sensitive lineage4.7 None
ERR7363023 Sensitive lineage4.3.3 None
ERR4813700 MDR-TB lineage4.3.3;lineage4.1.2.1 None
SRR23691444 Sensitive lineage2.2.1 None
ERR2446490 Sensitive lineage3 nl
ERR4815603 Sensitive lineage4.3.4.2 gb
ERR4815459 Sensitive lineage4.3.4.2 gb
ERR2446482 Sensitive lineage4.5 nl
ERR1679638 Pre-XDR-TB lineage4.6.5 ng
ERR4814762 HR-TB lineage3 gb
ERR4812920 HR-TB lineage4.3.3 pe
ERR3275266 Sensitive lineage3 nl
ERR3275319 Sensitive lineage4.3.2 nl
SRR3675282 Other None
ERR4813285 MDR-TB lineage4.1.2.1 pe
ERR3275998 Sensitive lineage3 nl
ERR4813397 MDR-TB lineage4.1.2.1 pe
ERR4815890 HR-TB lineage3 gb
ERR4814920 Sensitive lineage3.1 None
ERR4813359 MDR-TB lineage4.1.2.1 None
ERR4815563 Sensitive lineage3 gb
ERR4816940 Other lineage3.1.2 gb
ERR4817467 Sensitive lineage3.1.2 gb
ERR4816192 Sensitive lineage3 None
ERR2446301 Sensitive lineage3 nl
ERR2229211 Sensitive lineage4.8 None
ERR4816469 Sensitive lineage3 gb
ERR2145515 Sensitive lineage3 None
ERR2229768 Sensitive lineage4 None
ERR550856 Sensitive lineage4.7 de
ERR4816523 Other lineage3 None
ERR3275188 Sensitive lineage3 nl
SRR2024887 MDR-TB lineage2.2.1 cn
ERR4817663 Sensitive lineage3 None
ERR2184542 Sensitive lineage4.1.2.1 pe
ERR2229690 Other lineage4.8 None
ERR2199878 Sensitive lineage4.7 de
ERR2446419 Sensitive lineage3 nl
ERR2446313 Sensitive lineage3 nl
ERR2229397 Sensitive lineage4.8 None
ERR4816823 Sensitive lineage3 None
ERR4816855 Sensitive lineage3 gb
ERR2228811 Sensitive lineage4.8 None
ERR3275318 Sensitive lineage4.3.2 nl
ERR2446169 Sensitive lineage3 nl
ERR230107 Sensitive lineage3.1.2 None
ERR2513073 Sensitive lineage4.3 gb
ERR228109 Sensitive lineage3.1.2 None
ERR2510774 Sensitive lineage4.8 it
ERR2513074 Sensitive lineage3.1.2 gb
ERR2513137 Sensitive lineage3 None
ERR230113 Sensitive lineage3.1.2 None
ERR553293 Sensitive lineage4.7 de
ERR2433000 HR-TB lineage4.3.3 br
ERR3276104 MDR-TB lineage3 nl
ERR4818101 Sensitive lineage3.1.2 gb
ERR4818321 Sensitive lineage3 None
SRR5073661 Other lineage2.2.1 vn
ERR2512632 Sensitive lineage3.1.2 gb
ERR3275177 Sensitive lineage3 nl
ERR2512671 Other lineage3 gb
SRR5074112 Other lineage2.2.1 vn
ERR3275305 Sensitive lineage3 nl
ERR4818485 Sensitive lineage3 gb
SRR5067490 Other lineage2.2.1 vn
ERR2513348 Other lineage3 None
ERR3275678 Sensitive lineage4.5 nl
ERR3275817 Sensitive lineage3 nl
ERR4818642 Sensitive lineage3 gb
ERR2513680 Other lineage3 gb
ERR2513860 Other lineage3 gb
ERR2516369 Sensitive lineage4.1.2 be
ERR2516405 Pre-XDR-TB lineage4.1.2.1 pe
ERR2516451 MDR-TB lineage4.1.2.1 pe
ERR2514035 Other lineage3.1.2 None
ERR4820305 HR-TB lineage3 None
ERR2446138 Sensitive lineage3 nl
ERR2514080 Sensitive lineage3 gb
ERR4819406 Sensitive lineage3 gb
ERR4819524 Other lineage3 None
ERR2517186 Sensitive lineage3 nl
ERR2516597 Pre-XDR-TB lineage4.1.2.1 pe
ERR3276279 Sensitive lineage3 nl
ERR3275763 Sensitive lineage3 nl
ERR2517338 Sensitive lineage3 nl
ERR4820447 Sensitive lineage3.1.2 None
ERR4820450 Sensitive lineage3.1.2 gb
ERR4820876 Sensitive lineage3.1.2 gb
ERR4820569 Sensitive lineage3 gb
ERR2516698 Pre-XDR-TB lineage4.1.2.1 pe
ERR2514767 Sensitive lineage4.8 None
ERR2517324 Sensitive lineage3 nl
ERR2514783 Sensitive lineage3.1.2 gb
ERR4820614 Other lineage3.1.2 None
ERR2515032 Other lineage3 None
ERR4820989 HR-TB None
ERR2515082 Sensitive lineage3.1.2 gb
ERR3275628 Sensitive lineage3 nl
ERR3275412 Sensitive lineage3 nl
ERR3275777 Sensitive lineage3 nl
ERR4820137 Sensitive lineage3 None
ERR2517365 Sensitive lineage4.5 nl
ERR2517501 Sensitive lineage3 nl
ERR2517539 Sensitive lineage3 nl
ERR2517506 Sensitive lineage3 nl
ERR2653083 Pre-XDR-TB lineage4.3.3 None
ERR2517587 Sensitive lineage3 nl
ERR2517601 Sensitive lineage3 nl
ERR2653065 MDR-TB lineage4.3.3 None
ERR3275240 Sensitive lineage3 nl
ERR2517557 Sensitive lineage4.3.2 nl
ERR2653158 Sensitive lineage4.3.3 None
ERR2653181 RR-TB lineage4.3.3 None
SRR6045547 Sensitive lineage4.9;lineage3.1.2 gb
ERR2660430 Sensitive lineage4.3.3 None
SRR20969984 MDR-TB lineage2.2 None
ERR2707212 MDR-TB lineage4.3.3 cd
SRR23339998 Sensitive lineage3 None
ERR2706966 MDR-TB lineage4.6.1.2;lineage4.3.3 cd
ERR266559 Sensitive lineage3.1.2 None
ERR2679303 Sensitive lineage4.1 None
ERR266587 Sensitive lineage3.1.2 None
ERR278562 Sensitive lineage3.1.2 None
ERR4821149 Other lineage3 gb
ERR4821160 Sensitive lineage3 gb
ERR4821262 Sensitive lineage4.1.1.3 None
ERR4822533 Sensitive lineage3 None
ERR11067234 Sensitive lineage4.3.2 None
ERR3275874 MDR-TB lineage3 nl
ERR4821448 Sensitive lineage3.1.2 None
ERR4822214 Other lineage3 gb
ERR2446342 Sensitive lineage3 nl
SRR6045600 Other lineage3.1.2 gb
SRR6045618 Other lineage3.1.2 None
SRR6045744 Other lineage3.1.2 None
SRR6046273 Other lineage3.1.2 None
ERR2446097 Sensitive lineage3 nl
ERR4829450 Other lineage3 None
ERR4829238 Sensitive lineage3 None
ERR3276109 Sensitive lineage3 nl
SRR6397484 Sensitive lineage3 ca
ERR4829571 Sensitive lineage3 it
ERR4830235 Sensitive lineage1.1.1.1 vn
SRR6153039 Sensitive lineage2.2.1 ca
SRR6397620 Sensitive lineage3 ca
ERR11067307 Sensitive lineage4.3.2 None
SRR6650387 Sensitive lineage1.2.2.2 None
ERR4830963 Pre-XDR-TB lineage2.2.1 np
ERR4831328 Sensitive lineage3 de