lineage | Count |
---|---|
lineage2.2.1 | 31 |
lineage4.1.2 | 2 |
lineage2.2.1.1 | 1 |
lineage1.1.2 | 2 |
lineage4.1.2.1 | 7 |
lineage4.8 | 3 |
lineage2.2.2 | 3 |
lineage3.1.2;lineage2.2.1 | 1 |
lineage3 | 4 |
lineage4.8;lineage3 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.3.4.2 | 8 |
lineage4.3.3 | 1 |
lineage5.3 | 1 |
lineage3.1.2 | 1 |
lineage4.1.3 | 2 |
lineage4.6.1.1 | 2 |
lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 72 |
ID | Drug resistance | Lineage | Country iso2 | SRR15316068 | HR-TB | lineage2.2.1 | None | SRR14782671 | Sensitive | lineage4.1.2 | None | SRR11972357 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR15014737 | Pre-XDR-TB | lineage1.1.2 | None | ERR11082649 | MDR-TB | lineage4.1.2.1 | None | SRR25827791 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827460 | Pre-XDR-TB | lineage4.8 | None | SRR21798459 | HR-TB | lineage4.1.2 | None | ERR8025577 | Pre-XDR-TB | lineage2.2.2 | None | ERR5758329 | Pre-XDR-TB | lineage2.2.2 | None | SRR22873596 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827747 | Pre-XDR-TB | lineage3.1.2;lineage2.2.1 | None | SRR25827499 | Pre-XDR-TB | lineage3 | None | SRR25827582 | XDR-TB | lineage4.8;lineage3 | None | SRR25827790 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR671787 | Pre-XDR-TB | lineage2.2.1 | cn | SRR25827514 | Pre-XDR-TB | lineage3 | None | ERR1952142 | MDR-TB | lineage1.1.2 | ie | SRR6824351 | RR-TB | lineage2.2.1 | cn | SRR5073923 | HR-TB | lineage2.2.1 | None | ERR2516687 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR775340 | MDR-TB | lineage4.3.4.2 | pe | ERR751593 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR751354 | MDR-TB | lineage4.3.3 | pe | ERR4827826 | Sensitive | lineage2.2.1 | None | ERR4798760 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799148 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516554 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4796974 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516682 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4798368 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796389 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798460 | Pre-XDR-TB | lineage2.2.1 | in | SRR6356961 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798355 | MDR-TB | lineage2.2.1 | in | SRR6458447 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797438 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797394 | Pre-XDR-TB | lineage4.8 | in | ERR4797510 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798666 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799700 | Pre-XDR-TB | lineage3 | in | ERR4799472 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800060 | XDR-TB | lineage4.1.2.1 | in | ERR4800048 | XDR-TB | lineage4.1.2.1 | in | ERR3148046 | MDR-TB | lineage5.3 | None | ERR4800328 | MDR-TB | lineage4.8 | in | ERR4800077 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800594 | Pre-XDR-TB | lineage3.1.2 | in | ERR3148042 | MDR-TB | lineage4.1.2.1 | None | ERR2510195 | MDR-TB | lineage4.3.4.2 | pe | SRR8357447 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510476 | RR-TB | lineage3 | pk | ERR4813291 | MDR-TB | lineage4.3.4.2 | pe | ERR3287312 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR7653603 | Pre-XDR-TB | lineage2.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4423489 | Pre-XDR-TB | lineage4.1.3 | None | ERR11043570 | Pre-XDR-TB | lineage2.2.1 | None | DRR130179 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024907 | Pre-XDR-TB | lineage2.2.1 | None | ERR403296 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665596 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665984 | Pre-XDR-TB | lineage2.2.1 | None | ERR6397172 | MDR-TB | lineage4.1.2.1 | None | ERR6358869 | MDR-TB | lineage4.6.1.1 | None | ERR6358868 | MDR-TB | lineage4.6.1.1 | None | SRR24256286 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662669 | MDR-TB | lineage2.1 | None | ERR6397176 | MDR-TB | lineage4.1.2.1 | None | ERR6865428 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774231 | Pre-XDR-TB | lineage4.1.3 | None |
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