Rv2477c - c.-400G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
71 Sensitive
4 RR-TB
4 HR-TB
23 MDR-TB
34 Pre-XDR-TB
3 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 136 |
| lineage2.2.1.1;lineage3.1.2 | 1 |
| lineage1.1.3.1;lineage2.2.1.1 | 1 |
| lineage2.2.1.1;lineage3 | 3 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
| lineage2.2.1.1;lineage4.6.1 | 4 |
| lineage2.2.1.1;lineage3;lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 147 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR2101233 | Other | lineage2.2.1.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR25827465 | Sensitive | lineage2.2.1.1;lineage3.1.2 | None | ERR13291377 | Sensitive | lineage2.2.1.1 | None | SRR5065231 | Other | lineage2.2.1.1 | vn | SRR28045731 | Sensitive | lineage2.2.1.1 | None | SRR22249541 | Sensitive | lineage2.2.1.1 | None | SRR28045563 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR22424757 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5067334 | Sensitive | lineage2.2.1.1 | vn | ERR1213887 | Pre-XDR-TB | lineage2.2.1.1 | np | SRR6797370 | Sensitive | lineage2.2.1.1 | None | SRR6650257 | Sensitive | lineage2.2.1.1 | None | SRR6797299 | Sensitive | lineage1.1.3.1;lineage2.2.1.1 | None | ERR4423659 | MDR-TB | lineage2.2.1.1 | None | SRR5535861 | MDR-TB | lineage2.2.1.1 | None | SRR6650247 | Sensitive | lineage2.2.1.1 | None | SRR18593231 | MDR-TB | lineage2.2.1.1;lineage3 | None | ERR4797650 | Sensitive | lineage2.2.1.1 | in | ERR4423774 | MDR-TB | lineage2.2.1.1 | None | ERR386827 | Other | lineage2.2.1.1 | None | SRR21710594 | Sensitive | lineage2.2.1.1 | None | SRR5535924 | MDR-TB | lineage2.2.1.1 | None | ERR10225494 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR27450128 | Other | lineage2.2.1.1 | None | SRR6650180 | Other | lineage2.2.1.1 | None | SRR22175261 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827356 | Pre-XDR-TB | lineage2.2.1.1;lineage2.2.1.2;lineage3 | None | SRR6797434 | Sensitive | lineage2.2.1.1 | None | ERR13265264 | Sensitive | lineage2.2.1.1 | None | SRR28045760 | Sensitive | lineage2.2.1.1 | None | SRR29231549 | Sensitive | lineage2.2.1.1 | None | SRR29055731 | Sensitive | lineage2.2.1.1 | None | SRR29440959 | Sensitive | lineage2.2.1.1 | None | ERR13290875 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18910995 | Sensitive | lineage2.2.1.1 | None | SRR18911594 | Sensitive | lineage2.2.1.1 | None | SRR30182632 | Sensitive | lineage2.2.1.1 | None | SRR8217900 | Other | lineage2.2.1.1 | None | SRR25827812 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | SRR26112384 | Sensitive | lineage2.2.1.1 | None | SRR1173415 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | ERR13266592 | Sensitive | lineage2.2.1.1 | None | SRR29231407 | Sensitive | lineage2.2.1.1 | None | ERR13291961 | Sensitive | lineage2.2.1.1 | None | SRR25827435 | XDR-TB | lineage2.2.1.1 | None | ERR13292333 | Sensitive | lineage2.2.1.1 | None | SRR6650162 | Sensitive | lineage2.2.1.1 | None | ERR13292226 | Sensitive | lineage2.2.1.1 | None | SRR5817465 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13266808 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR21676414 | Sensitive | lineage2.2.1.1 | None | SRR25340745 | Sensitive | lineage2.2.1.1 | None | ERR4423650 | MDR-TB | lineage2.2.1.1 | None | SRR25827869 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13266784 | MDR-TB | lineage2.2.1.1 | None | ERR2510305 | MDR-TB | lineage2.2.1.1 | pk | ERR2510871 | Pre-XDR-TB | lineage2.2.1.1 | pk | ERR4796449 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799743 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799862 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798513 | Sensitive | lineage2.2.1.1 | in | ERR4799999 | MDR-TB | lineage2.2.1.1 | in | ERR4799231 | HR-TB | lineage2.2.1.1 | in | ERR13285355 | Sensitive | lineage2.2.1.1 | None | SRR29440875 | Sensitive | lineage2.2.1.1 | None | ERR4799658 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR3077945 | MDR-TB | lineage2.2.1.1 | None | ERR4799425 | Sensitive | lineage2.2.1.1 | in | ERR4796398 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR18914234 | Sensitive | lineage2.2.1.1 | None | ERR13291321 | Sensitive | lineage2.2.1.1 | None | SRR21685248 | Sensitive | lineage2.2.1.1 | None | ERR4423658 | RR-TB | lineage2.2.1.1 | None | SRR21728168 | Sensitive | lineage2.2.1.1 | None | SRR28046072 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5341212 | Sensitive | lineage2.2.1.1 | None | SRR6152782 | Sensitive | lineage2.2.1.1 | ca | SRR17856656 | HR-TB | lineage2.2.1.1 | None | ERR4814411 | Sensitive | lineage2.2.1.1 | gb | ERR2513936 | Sensitive | lineage2.2.1.1 | gb | SRR15014750 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28045809 | XDR-TB | lineage2.2.1.1 | None | SRR18213697 | Other | lineage2.2.1.1 | None | SRR26399407 | Sensitive | lineage2.2.1.1 | None | SRR28044953 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28044786 | Sensitive | lineage2.2.1.1 | None | SRR6797755 | Sensitive | lineage2.2.1.1 | None | SRR25827645 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11067540 | Sensitive | lineage2.2.1.1 | None | ERR405221 | MDR-TB | lineage2.2.1.1 | None | ERR4799334 | Sensitive | lineage2.2.1.1 | None | SRR16115014 | Sensitive | lineage2.2.1.1 | None | SRR26112366 | Sensitive | lineage2.2.1.1 | None | ERR4816923 | Sensitive | lineage2.2.1.1 | None | SRR21689840 | Sensitive | lineage2.2.1.1 | None | ERR4423773 | MDR-TB | lineage2.2.1.1 | None | SRR1173245 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | SRR21677621 | Sensitive | lineage2.2.1.1 | None | SRR21675928 | Sensitive | lineage2.2.1.1 | None | SRR25827528 | MDR-TB | lineage2.2.1.1 | None | SRR29772818 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR28868483 | Sensitive | lineage2.2.1.1 | None | ERR13261089 | Sensitive | lineage2.2.1.1 | None | SRR6797351 | Sensitive | lineage2.2.1.1 | None | SRR20969519 | HR-TB | lineage2.2.1.1 | None | SRR25827423 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29053218 | Sensitive | lineage2.2.1.1 | None | ERR351895 | Other | lineage2.2.1.1 | None | SRR29440870 | Sensitive | lineage2.2.1.1 | None | ERR4423651 | RR-TB | lineage2.2.1.1 | None | ERR4423653 | MDR-TB | lineage2.2.1.1 | None | SRR1200798 | Sensitive | lineage2.2.1.1 | None | ERR2510870 | Pre-XDR-TB | lineage2.2.1.1 | pk | ERR2510252 | Pre-XDR-TB | lineage2.2.1.1 | pk | SRR6650402 | Sensitive | lineage2.2.1.1 | None | SRR25827339 | Sensitive | lineage2.2.1.1 | None | ERR4797477 | Sensitive | lineage2.2.1.1 | in | ERR4798295 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798331 | Sensitive | lineage2.2.1.1 | in | ERR4797130 | RR-TB | lineage2.2.1.1 | in | SRR29604865 | Sensitive | lineage2.2.1.1 | None | ERR4798428 | MDR-TB | lineage2.2.1.1 | in | SRR1173866 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | ERR4799236 | Sensitive | lineage2.2.1.1 | in | ERR4799352 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799502 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799516 | MDR-TB | lineage2.2.1.1 | in | SRR25827674 | XDR-TB | lineage2.2.1.1;lineage3 | None | SRR25340920 | Sensitive | lineage2.2.1.1 | None | ERR4800352 | MDR-TB | lineage2.2.1.1 | in | ERR4798155 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR7069622 | Sensitive | lineage2.2.1.1 | None | SRR6797796 | Sensitive | lineage2.2.1.1 | None | SRR1173873 | MDR-TB | lineage2.2.1.1;lineage4.6.1 | None | ERR4797116 | Sensitive | lineage2.2.1.1 | in | ERR4800081 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4800238 | HR-TB | lineage2.2.1.1 | in | ERR13292492 | Sensitive | lineage2.2.1.1 | None | SRR28044467 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR6152908 | Sensitive | lineage2.2.1.1 | ca | SRR6152857 | Sensitive | lineage2.2.1.1 | ca | ERR4831012 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4423534 | MDR-TB | lineage2.2.1.1 | None | SRR25827652 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4.1.1.1 | None | ERR3132127 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4800245 | MDR-TB | lineage2.2.1.1 | None |
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