Rv2780 - c.436_437dupGC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
5 HR-TB
18 MDR-TB
144 Pre-XDR-TB
13 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 38 |
| lineage2.2.1 | 37 |
| lineage2.2.2 | 16 |
| lineage4.5 | 6 |
| lineage4.2.1 | 16 |
| lineage4.1.2.1 | 6 |
| lineage4.8 | 15 |
| lineage3.1.2 | 1 |
| lineage4.3.2 | 6 |
| lineage4.1.1.3 | 6 |
| lineage3 | 8 |
| lineage4.2.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2.1;lineage4.3.3 | 2 |
| lineage4.3 | 2 |
| lineage2.2.1;lineage4.2.1 | 3 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 5 |
| lineage4.3.4.2 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage4.2 | 1 |
| lineage2.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13870379 | Pre-XDR-TB | lineage4.3.3 | None | SRR8357447 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755731 | Pre-XDR-TB | lineage2.2.1 | None | ERR7361966 | Pre-XDR-TB | lineage2.2.2 | None | SRR10147685 | Pre-XDR-TB | lineage4.5 | None | SRR23310883 | HR-TB | lineage4.2.1 | None | SRR29274059 | MDR-TB | lineage4.1.2.1 | None | ERR015611 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273960 | MDR-TB | lineage4.8 | None | SRR29772690 | XDR-TB | lineage3.1.2 | None | SRR24709991 | Pre-XDR-TB | lineage4.3.3 | None | ERR4972474 | MDR-TB | lineage4.3.2 | None | ERR5864811 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806943 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | ERR5897080 | Pre-XDR-TB | lineage3 | None | SRR14802053 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873431 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180328 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181260 | Pre-XDR-TB | lineage4.3.3 | None | ERR11043789 | MDR-TB | lineage4.2.1.1 | None | SRR1181321 | Pre-XDR-TB | lineage4.3.3 | None | ERR4797944 | Pre-XDR-TB | lineage2.2.1 | in | ERR4276876 | MDR-TB | lineage4.8 | None | ERR2184286 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR13266531 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755647 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232623 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02350422 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02584596 | Pre-XDR-TB | lineage2.2.1 | md | SRR924228 | Pre-XDR-TB | lineage4.3.3 | None | ERR5897091 | Pre-XDR-TB | lineage3 | None | ERR1664663 | MDR-TB | lineage4.2.1 | None | ERR1664643 | MDR-TB | lineage4.2.1 | None | ERR1664653 | MDR-TB | lineage4.2.1 | None | SAMN02403631 | Pre-XDR-TB | lineage2.2.2 | za | SAMN02628522 | Pre-XDR-TB | lineage3 | ir | SRR28498573 | Pre-XDR-TB | lineage4.2.1 | None | ERR4831271 | MDR-TB | lineage4.8 | de | SRR28339300 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488984 | XDR-TB | lineage4.3.2 | None | ERR7911708 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR4830942 | Pre-XDR-TB | lineage2.2.1 | np | ERR8975695 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975724 | XDR-TB | lineage4.4.1.1.1 | None | SRR14782279 | Pre-XDR-TB | lineage4.2.1 | None | ERR2516738 | XDR-TB | lineage4.1.2.1 | pe | ERR552809 | Pre-XDR-TB | lineage4.8.1 | sz | SRR28351311 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807583 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758442 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175494 | Pre-XDR-TB | lineage2.2.2 | None | ERR4972536 | HR-TB | lineage4.3.2 | None | ERR11466311 | MDR-TB | lineage4.3.4.2.1 | None | ERR3794398 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172075 | Pre-XDR-TB | lineage3 | None | SRR10397238 | Pre-XDR-TB | lineage4.2.1;lineage4.3.3 | None | SRR10808353 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2510654 | Pre-XDR-TB | lineage2.2.1 | it | ERR10748499 | XDR-TB | lineage2.2.2 | None | SRR1011463 | Pre-XDR-TB | lineage4.3.3 | None | SRR10147697 | Pre-XDR-TB | lineage4.3 | None | SRR10379898 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356969 | Pre-XDR-TB | lineage2.2.1 | None | DRR130106 | Pre-XDR-TB | lineage4.5 | None | SRR7653018 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488562 | MDR-TB | lineage4.3.4.2.1 | None | SRR13312539 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312535 | Pre-XDR-TB | lineage4.3.3 | None | SRR15364444 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312531 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312533 | Pre-XDR-TB | lineage4.3.3 | None | ERR4423616 | Pre-XDR-TB | lineage4.3.2 | None | SRR13423554 | Pre-XDR-TB | lineage2.2.1 | None | SRR24466786 | Pre-XDR-TB | lineage4.8 | None | SRR29274214 | Pre-XDR-TB | lineage4.8 | None | ERR5864810 | XDR-TB | lineage4.3.3 | None | ERR5758445 | Pre-XDR-TB | lineage2.2.2 | None | SRR7755686 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755763 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762383 | Pre-XDR-TB | lineage4.2.1 | None | SRR6807746 | Pre-XDR-TB | lineage4.2.1 | None | SRR1169159 | Pre-XDR-TB | lineage2.2.1 | None | SRR29050709 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4276875 | MDR-TB | lineage4.8 | None | SRR24256065 | MDR-TB | lineage4.3.3 | None | SRR28498675 | Pre-XDR-TB | lineage4.2.1 | None | ERR8025434 | Pre-XDR-TB | lineage2.2.2 | None | SRR29289212 | Other | lineage3 | None | SRR3544717 | Pre-XDR-TB | lineage4.3.3 | None | ERR10762311 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR29273728 | Pre-XDR-TB | lineage4.8 | None | ERR4799443 | Pre-XDR-TB | lineage1.1.2 | in | ERR13261154 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380018 | Pre-XDR-TB | lineage4.2.1 | None | ERR13254276 | Pre-XDR-TB | lineage4.5 | None | ERR4813100 | Pre-XDR-TB | lineage2.2.1 | pe | SRR13312530 | Pre-XDR-TB | lineage4.2.1;lineage4.3.3 | None | SRR16089401 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR11773737 | Pre-XDR-TB | lineage4.3.3 | None | SRR28351416 | Pre-XDR-TB | lineage4.3.3 | None | ERR5897092 | Pre-XDR-TB | lineage3 | None | ERR4813840 | HR-TB | lineage4.3.4.2 | None | ERR4830950 | XDR-TB | lineage2.2.1 | np | ERR4812297 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4972491 | Pre-XDR-TB | lineage4.3.2 | None | ERR4830767 | Pre-XDR-TB | lineage4.3 | ir | SRR13312534 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312538 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175524 | Pre-XDR-TB | lineage2.2.2 | None | SRR29273837 | HR-TB | lineage4.8 | None | SAMN01925661 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02585960 | Pre-XDR-TB | lineage4.3.3 | za | ERR133887 | Pre-XDR-TB | lineage4.3.3 | ru | ERR12118032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR24256254 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062835 | Pre-XDR-TB | lineage4.3.3 | None | SRR5152957 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356943 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356936 | Pre-XDR-TB | lineage4.8 | None | ERR4813219 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16370615 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR11662327 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662408 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175523 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827875 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | ERR4796896 | XDR-TB | lineage4.8 | in | SRR13423564 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356930 | Pre-XDR-TB | lineage4.8 | None | SRR13232648 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646051 | Pre-XDR-TB | lineage2.2.1;lineage4.2 | None | SRR29094001 | Pre-XDR-TB | lineage2.2.2 | None | SRR29017350 | Pre-XDR-TB | lineage4.3.3 | None | ERR13261246 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273715 | Pre-XDR-TB | lineage4.8 | None | SRR1166303 | Pre-XDR-TB | lineage2.2.1 | None | SRR30180332 | Pre-XDR-TB | lineage2.1 | None | SRR23311066 | Pre-XDR-TB | lineage4.2.1 | None | SRR29093704 | Pre-XDR-TB | lineage2.2.2 | None | SRR13312532 | Pre-XDR-TB | lineage4.3.3 | None | ERR16022275 | Pre-XDR-TB | lineage4.5 | None | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | SAMN01925660 | Pre-XDR-TB | lineage4.3.3 | None | SRR14801569 | HR-TB | lineage4.2.1 | None | SRR10379908 | XDR-TB | lineage4.2.1 | None | ERR13285745 | Pre-XDR-TB | lineage4.2.1 | None | ERR13260027 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR14782156 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285851 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4822369 | Pre-XDR-TB | lineage4.5 | None | ERR4798314 | Pre-XDR-TB | lineage4.2.2.2 | in | SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | ERR4972528 | Pre-XDR-TB | lineage4.3.3 | None | SRR1166130 | MDR-TB | lineage4.8 | ro | SRR1166094 | Pre-XDR-TB | lineage4.8 | ro | ERR3287846 | Pre-XDR-TB | lineage4 | pe | SRR28339299 | Pre-XDR-TB | lineage2.2.1 | None | ERR2864220 | MDR-TB | lineage4.2.1 | pt | SRR7341679 | MDR-TB | lineage4.8 | ro | SRR847783 | Pre-XDR-TB | lineage4.3.3 | za | SRR847779 | Pre-XDR-TB | lineage4.3.3 | za | SRR24827304 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1180403 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025419 | Pre-XDR-TB | lineage2.2.2 | None | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | ERR11489025 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR4813820 | Pre-XDR-TB | lineage4.3.2 | None | ERR5864809 | Pre-XDR-TB | lineage4.3.3 | None | ERR9907792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR9992706 | XDR-TB | lineage2.2.2 | None | ERR9993114 | XDR-TB | lineage4.1.1.3 | None | SRR1175492 | Pre-XDR-TB | lineage2.2.2 | None | ERR1035304 | MDR-TB | lineage4.3.3 | br | ERR2515541 | XDR-TB | lineage2.2.2 | za | SRR14781924 | Pre-XDR-TB | lineage2.2.1 | None | SRR28646097 | MDR-TB | lineage4.1.2.1 | None | SRR7755689 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4011119 | Pre-XDR-TB | lineage2.2.2 | None | SRR29056198 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR14782700 | XDR-TB | lineage4.2.1 | None |
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