Rv2780 - c.436_437dupGC
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
14 MDR-TB
107 Pre-XDR-TB
6 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 21 |
| lineage4.2.1 | 14 |
| lineage2.2.1 | 29 |
| lineage4.1.1.3 | 5 |
| lineage3 | 8 |
| lineage4.1.2.1 | 3 |
| lineage4.8.1 | 1 |
| lineage2.2.2 | 14 |
| lineage4.5 | 3 |
| lineage4.3 | 1 |
| lineage4.8 | 9 |
| lineage4.3.2 | 5 |
| lineage4.2;lineage2.2.1 | 1 |
| lineage4.2.1;lineage2.2.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.3;lineage4.2.1 | 2 |
| lineage2.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 128 |
Geographic prevalence
Country level data for this variant is available for 30 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3544717 | Pre-XDR-TB | lineage4.3.3 | None | ERR1664663 | MDR-TB | lineage4.2.1 | None | ERR1664653 | MDR-TB | lineage4.2.1 | None | ERR1664643 | MDR-TB | lineage4.2.1 | None | ERR4813100 | Pre-XDR-TB | lineage2.2.1 | pe | SAMN02585960 | Pre-XDR-TB | lineage4.3.3 | za | ERR4813219 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02628522 | Pre-XDR-TB | lineage3 | ir | ERR133887 | Pre-XDR-TB | lineage4.3.3 | ru | ERR2184286 | Pre-XDR-TB | lineage4.1.2.1 | pe | SAMN02350422 | Pre-XDR-TB | lineage4.3.3 | za | ERR2510654 | Pre-XDR-TB | lineage2.2.1 | it | ERR552809 | Pre-XDR-TB | lineage4.8.1 | sz | SAMN02403631 | Pre-XDR-TB | lineage2.2.2 | za | SRR847779_SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | SRR5152957 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515541 | XDR-TB | lineage2.2.2 | za | ERR4822369 | Pre-XDR-TB | lineage4.5 | None | SRR23310883 | MDR-TB | lineage4.2.1 | None | ERR2516738 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR23311066 | MDR-TB | lineage4.2.1 | None | ERR4830767 | Pre-XDR-TB | lineage4.3 | ir | ERR2864220 | MDR-TB | lineage4.2.1 | pt | ERR4830950 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | SRR6356936 | Pre-XDR-TB | lineage4.8 | None | SRR6356969 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830942 | Pre-XDR-TB | lineage2.2.1 | np | SRR6356930 | Pre-XDR-TB | lineage4.8 | None | SRR6356943 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831271 | MDR-TB | lineage4.8 | de | ERR4972474 | MDR-TB | lineage4.3.2 | None | ERR4972491 | Pre-XDR-TB | lineage4.3.2 | None | SRR6807746 | Pre-XDR-TB | lineage4.2.1 | None | ERR4972536 | XDR-TB | lineage4.3.2 | None | ERR4972528 | Pre-XDR-TB | lineage4.3.3 | None | SRR7755647 | Pre-XDR-TB | lineage2.2.1 | None | SRR924228 | Pre-XDR-TB | lineage4.3.3 | None | SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | SRR847779 | Pre-XDR-TB | lineage4.3.3 | za | SRR847783 | Pre-XDR-TB | lineage4.3.3 | za | SRR7341679 | MDR-TB | lineage4.8 | ro | SRR8357447 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646051 | Pre-XDR-TB | lineage4.2;lineage2.2.1 | None | SRR7755686 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | SRR7755689 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7755731 | Pre-XDR-TB | lineage2.2.1 | None | DRR130106 | Pre-XDR-TB | lineage4.5 | None | ERR1035304 | MDR-TB | lineage4.3.3 | br | SRR7755763 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748499 | Pre-XDR-TB | lineage2.2.2 | None | ERR4423616 | Pre-XDR-TB | lineage4.3.2 | None | ERR10762311 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | ERR4011119 | Pre-XDR-TB | lineage2.2.2 | None | ERR4276875 | MDR-TB | lineage4.8 | None | ERR10762383 | Pre-XDR-TB | lineage4.2.1 | None | ERR11043789 | MDR-TB | lineage4.2.1.1 | None | ERR3287846 | XDR-TB | lineage4 | pe | ERR3794398 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276876 | MDR-TB | lineage4.8 | None | ERR4798314 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797944 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796896 | XDR-TB | lineage4.8 | in | ERR5897092 | Pre-XDR-TB | lineage3 | None | ERR4812297 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5864811 | Pre-XDR-TB | lineage4.3.3 | None | ERR4799443 | Pre-XDR-TB | lineage1.1.2 | in | ERR5897080 | Pre-XDR-TB | lineage3 | None | ERR5897091 | Pre-XDR-TB | lineage3 | None | ERR8975695 | Pre-XDR-TB | lineage4.3.3 | None | ERR7361966 | Pre-XDR-TB | lineage2.2.2 | None | ERR7911708 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR8665675 | Pre-XDR-TB | lineage2.2.1 | None | ERR9907792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR8975724 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9992706 | Pre-XDR-TB | lineage2.2.2 | None | SRR10379898 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993114 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011463 | Pre-XDR-TB | lineage4.3.3 | None | SRR10380018 | Pre-XDR-TB | lineage4.2.1 | None | SRR10379908 | XDR-TB | lineage4.2.1 | None | SRR1175523 | Pre-XDR-TB | lineage2.2.2 | None | SRR10397238 | Pre-XDR-TB | lineage4.3.3;lineage4.2.1 | None | SRR1062835 | Pre-XDR-TB | lineage4.3.3 | None | SRR10808353 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1166094 | Pre-XDR-TB | lineage4.8 | ro | SRR1172065 | Pre-XDR-TB | lineage3 | None | SRR1166130 | MDR-TB | lineage4.8 | ro | SRR1166303 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169159 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172075 | Pre-XDR-TB | lineage3 | None | SRR1175524 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180403 | Pre-XDR-TB | lineage4.3.3 | None | SRR1180179 | Pre-XDR-TB | lineage3 | None | SRR1180328 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175494 | Pre-XDR-TB | lineage2.2 | None | SRR1175492 | Pre-XDR-TB | lineage2.2.2 | None | SRR13870379 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181321 | Pre-XDR-TB | lineage4.3.3 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR13232623 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232648 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181260 | Pre-XDR-TB | lineage4.3.3 | None | SRR13312530 | Pre-XDR-TB | lineage4.3.3;lineage4.2.1 | None | SRR13423554 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782156 | Pre-XDR-TB | lineage2.2.1 | None | SRR14781924 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782700 | XDR-TB | lineage4.2.1 | None | SRR14782279 | Pre-XDR-TB | lineage4.2.1 | None | SRR14801569 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782693 | Pre-XDR-TB | lineage4.2.1 | None | SRR15364444 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807583 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802053 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025419 | Pre-XDR-TB | lineage2.2.2 | None | SRR16089401 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR16370615 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR4813820 | Pre-XDR-TB | lineage4.3.2 | None | ERR8025434 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025584 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873431 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758442 | Pre-XDR-TB | lineage2.2.2 | None | ERR9806943 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5758445 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813840 | HR-TB | lineage4.3.4.2 | None | SAMN02584596 | Pre-XDR-TB | lineage2.2.1 | md |
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