Rv3423c - p.Met343Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
25 MDR-TB
138 Pre-XDR-TB
40 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 19 |
| lineage4.3.4.2 | 30 |
| lineage2.2.1 | 75 |
| lineage1.2.2.1 | 2 |
| lineage2.2.2 | 18 |
| lineage4.8 | 7 |
| lineage4.3.3 | 24 |
| lineage4.3 | 4 |
| lineage2.2.1.1 | 2 |
| lineage4.9 | 2 |
| lineage2.2.2;lineage4.4.2 | 1 |
| lineage1.2.2.2 | 6 |
| lineage2.2.1;lineage4.1.2.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage1.1.2;lineage2.2.1 | 1 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage1.1.2;lineage4 | 1 |
| lineage3 | 2 |
| lineage4.6.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 208 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10525363 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2653092 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR13276342 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806852 | MDR-TB | lineage1.2.2.1 | None | SRR15364442 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056258 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273612 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1165330 | Pre-XDR-TB | lineage2.2.2 | None | SRR7592364 | Pre-XDR-TB | lineage4.8 | None | SRR1165660 | Pre-XDR-TB | lineage4.3.3 | None | ERR13249746 | Pre-XDR-TB | lineage4.3 | None | SRR30180264 | MDR-TB | lineage2.2.1.1 | None | ERR13249747 | Pre-XDR-TB | lineage4.3 | None | SRR29093916 | XDR-TB | lineage2.2.2 | None | ERR1034908 | XDR-TB | lineage4.3.4.2 | pt | DRR130182 | MDR-TB | lineage2.2.1 | None | ERR13276329 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055571 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273719 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29273610 | Pre-XDR-TB | lineage4.8 | None | SRR28339293 | MDR-TB | lineage2.2.1 | None | SRR1196575 | Pre-XDR-TB | lineage4.3.3 | None | ERR10610189 | MDR-TB | lineage1.2.2.1 | None | SRR26139264 | Other | lineage4.9 | None | SRR26139263 | Other | lineage4.9 | None | ERR1664656 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1664621 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1664646 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11774907 | Pre-XDR-TB | lineage2.2.1 | None | ERR11773816 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165220 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888089 | HR-TB | lineage4.3.3 | None | ERR11798563 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034889 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR21576591 | Pre-XDR-TB | lineage4.3.3 | None | SRR22424779 | XDR-TB | lineage2.2.1 | None | ERR4830707 | MDR-TB | lineage4.3.3 | None | SRR10430369 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093366 | XDR-TB | lineage2.2.2;lineage4.4.2 | None | ERR13261487 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351157 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR13288938 | Pre-XDR-TB | lineage4.3.3 | None | ERR7362015 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR21277502 | Other | lineage2.2.1 | None | SRR14782568 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340028 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173267 | Pre-XDR-TB | lineage2.2.2 | None | SRR28888045 | Pre-XDR-TB | lineage4.3.3 | None | SRR24828592 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173211 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801880 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653135 | MDR-TB | lineage4.3.4.2 | None | ERR2600492 | MDR-TB | lineage4.3.3 | None | ERR1664639 | XDR-TB | lineage4.3.4.2 | None | SRR5486872 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | ERR13249798 | Pre-XDR-TB | lineage4.3 | None | SRR29274109 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29055838 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276910 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755665 | Pre-XDR-TB | lineage4.3.3 | None | ERR1036283 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR29093120 | XDR-TB | lineage2.2.2 | None | ERR7362010 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258490 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576724 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173448 | Pre-XDR-TB | lineage4.3.3 | None | ERR13276261 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR29093955 | XDR-TB | lineage2.2.2 | None | SRR29081010 | MDR-TB | lineage1.2.1.2.1 | None | ERR13288889 | Pre-XDR-TB | lineage2.2.2 | None | SRR29273686 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1167297 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093122 | XDR-TB | lineage2.2.2 | None | SRR29274098 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1034853 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29273839 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29093433 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662425 | MDR-TB | lineage1.1.1 | None | SRR9738485 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1227528 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28706626 | XDR-TB | lineage2.2.1 | None | ERR13284759 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034901 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1664640 | XDR-TB | lineage4.3.4.2 | None | ERR11082026 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184333 | Pre-XDR-TB | lineage4.3.3 | None | ERR13258457 | MDR-TB | lineage2.2.1 | None | ERR1664638 | XDR-TB | lineage4.3.4.2 | None | ERR13261966 | Pre-XDR-TB | lineage2.2.1 | None | ERR1664650 | XDR-TB | lineage4.3.4.2 | None | ERR1664635 | XDR-TB | lineage4.3.4.2 | None | ERR1664660 | XDR-TB | lineage4.3.4.2 | None | ERR1664652 | XDR-TB | lineage4.3.4.2 | None | ERR1664662 | XDR-TB | lineage4.3.4.2 | None | ERR1664642 | XDR-TB | lineage4.3.4.2 | None | SRR28351204 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR6397671 | MDR-TB | lineage2.2.1.1 | ca | ERR7361993 | Pre-XDR-TB | lineage4.3.3 | None | SRR14801831 | XDR-TB | lineage2.2.1 | None | ERR11081338 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025542 | Pre-XDR-TB | lineage2.2.1 | None | SRR28467041 | Pre-XDR-TB | lineage2.2.2 | None | SRR7898220 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516865 | MDR-TB | lineage2.2.1 | gb | ERR2516711 | MDR-TB | lineage2.2.1 | nl | ERR9992977 | XDR-TB | lineage2.2.2 | None | ERR9806999 | Pre-XDR-TB | lineage2.2.1 | None | DRR130155 | Pre-XDR-TB | lineage2.2.1 | None | SRR23311027 | XDR-TB | lineage2.2.1 | None | ERR7361989 | Pre-XDR-TB | lineage4.3.3 | None | SRR29096617 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169271 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971241 | Pre-XDR-TB | lineage4.3.3 | None | ERR11465836 | MDR-TB | lineage4.3.3 | None | ERR1815551 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR7645858 | Pre-XDR-TB | lineage4.3.3 | None | SRR9971057 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175439 | Pre-XDR-TB | lineage2.2.2 | None | ERR1394278 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869159 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488553 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR8025697 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802077 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273861 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR2307379 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782040 | XDR-TB | lineage2.2.1 | None | ERR1034895 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR1173266 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274067 | Pre-XDR-TB | lineage4.8 | None | ERR13291025 | MDR-TB | lineage2.2.2 | None | ERR11043890 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR29539354 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | ERR386992 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827781 | XDR-TB | lineage2.2.1 | None | SRR10303291 | Pre-XDR-TB | lineage2.2.1 | None | ERR1815555 | XDR-TB | lineage4.3.4.2 | None | ERR1034885 | XDR-TB | lineage4.3.4.2 | pt | SRR22175187 | XDR-TB | lineage1.1.2;lineage2.2.1 | None | SRR1169212 | Pre-XDR-TB | lineage4.3.3 | None | ERR2653117 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29274009 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR117618 | Pre-XDR-TB | lineage1.1.1 | None | SRR22175239 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR13291100 | Pre-XDR-TB | lineage1.2.1.2 | None | ERR9992683 | MDR-TB | lineage1.2.2.2 | None | SRR29274104 | MDR-TB | lineage4.8 | None | SRR5153713 | Pre-XDR-TB | lineage2.2.1 | None | ERR11774905 | Pre-XDR-TB | lineage2.2.1 | None | SRR6807694 | Pre-XDR-TB | lineage4.2.1 | None | ERR13261467 | XDR-TB | lineage2.2.1 | None | DRR130151 | MDR-TB | lineage2.2.1 | None | ERR13288933 | XDR-TB | lineage2.2.1 | None | DRR130199 | Pre-XDR-TB | lineage2.2.1 | None | SRR1167175 | MDR-TB | lineage2.2.2 | None | ERR11798533 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273928 | Pre-XDR-TB | lineage4.8 | None | ERR11043144 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR26331613 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR29093128 | XDR-TB | lineage2.2.2 | None | SRR29273608 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29055859 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290973 | Pre-XDR-TB | lineage4.3.3 | None | SRR29274120 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1353081 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310906 | XDR-TB | lineage2.2.1 | None | ERR9992666 | MDR-TB | lineage1.2.2.2 | None | ERR13291053 | Pre-XDR-TB | lineage2.2.2 | None | SRR29093950 | Pre-XDR-TB | lineage2.2.2 | None | ERR2864241 | XDR-TB | lineage4.3.4.2 | pt | SRR28045507 | XDR-TB | lineage2.2.1 | None | SRR7755756 | Pre-XDR-TB | lineage4.3.3 | None | SRR28339294 | MDR-TB | lineage2.2.1 | None | ERR7910975 | Pre-XDR-TB | lineage2.2.1 | md | ERR2653030 | HR-TB | lineage4.3.4.1 | None | SRR25827746 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044220 | Pre-XDR-TB | lineage2.2.1 | None | ERR1664637 | XDR-TB | lineage4.3.4.2 | None | ERR1815552 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR9992614 | Pre-XDR-TB | lineage4.3.3 | None | SRR17856682 | Pre-XDR-TB | lineage2.2.1 | None | SRR18593216 | Pre-XDR-TB | lineage1.1.2;lineage4 | None | ERR553196 | Pre-XDR-TB | lineage2.2.1 | de | ERR2677396 | Pre-XDR-TB | lineage4.1.2.1 | de | ERR2510730 | Pre-XDR-TB | lineage4.8 | it | SRR29273731 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13249507 | Pre-XDR-TB | lineage4.3 | None | ERR13285061 | MDR-TB | lineage4.1.2.1 | None | ERR1664636 | XDR-TB | lineage4.3.4.2 | None | SRR28888044 | XDR-TB | lineage4.3.3 | None | SRR28858755 | XDR-TB | lineage4.3.4.1 | None | ERR13284359 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034590 | Pre-XDR-TB | lineage3 | pk | SRR28351165 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864802 | Pre-XDR-TB | lineage2.2.1 | None | ERR688022 | Pre-XDR-TB | lineage3 | None | SRR1167350 | Pre-XDR-TB | lineage4.3.3 | None | ERR2984797 | XDR-TB | lineage4.3.4.2 | None | ERR1035355 | Pre-XDR-TB | lineage4.6.4 | br | SRR10380123 | Pre-XDR-TB | lineage2.2.1 | None | SRR7657749 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284376 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082590 | MDR-TB | lineage4.1.2.1 | None | SRR29093123 | XDR-TB | lineage2.2.2 | None | SRR29273850 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6807693 | Pre-XDR-TB | lineage4.2.1 | None | SRR29093947 | XDR-TB | lineage2.2.2 | None | SRR29273888 | MDR-TB | lineage4.8 | None |
|---|
