ERR2677455
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
de
|
ERR9806999
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424779
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830707
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7361969
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR1664636
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1664660
|
XDR-TB
|
lineage4.3.4.2
|
None
|
SRR28351157
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR29096617
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13288938
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516865
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR9971241
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR23340028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273888
|
MDR-TB
|
lineage4.8
|
None
|
SRR28351165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645858
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1664621
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1035215
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
SAMN02403568
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR1035226
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR688022
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1035355
|
Pre-XDR-TB
|
lineage4.6.4
|
br
|
ERR2600492
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093433
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082590
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1036283
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR7585403
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7362010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034822
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR1034847
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR1034885
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR10525363
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR1035199
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR22175187
|
XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
ERR2653117
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR9806852
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR15364442
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR117618
|
Pre-XDR-TB
|
lineage1.1.1
|
None
|
SRR22175239
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR1165330
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7592364
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4830684
|
Pre-XDR-TB
|
lineage4.3.3
|
dz
|
ERR1034853
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR13286169
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4800449
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6807694
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28706626
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1034901
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR1034908
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
DRR130199
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539354
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR1167175
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1184333
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586065
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11043144
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR26331613
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR1664635
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1664638
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR11774835
|
XDR-TB
|
lineage4.8
|
None
|
SRR23310906
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798656
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2864241
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR4830708
|
MDR-TB
|
lineage4.3.3
|
dz
|
ERR1034850
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR6397671
|
MDR-TB
|
lineage2.2.1.1
|
ca
|
SRR28351204
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR13249798
|
Pre-XDR-TB
|
lineage4.3
|
None
|
SRR28888089
|
HR-TB
|
lineage4.3.3
|
None
|
SRR7585397
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7755756
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28339294
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288933
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13289036
|
MDR-TB
|
lineage4.8
|
None
|
ERR11798563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822297
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR28467041
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1664656
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4813211
|
Pre-XDR-TB
|
lineage4.8
|
pe
|
ERR13284376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034889
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR10430369
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799456
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799887
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29273731
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
DRR130155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311027
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29093366
|
XDR-TB
|
lineage2.2.2;lineage4.4.2
|
None
|
ERR7361989
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169271
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888044
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR28858755
|
XDR-TB
|
lineage4.3.4.1
|
None
|
ERR1034590
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR11465836
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1173267
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28888045
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24828592
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799448
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR7898220
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1394278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173211
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR275182
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR14801880
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13249747
|
Pre-XDR-TB
|
lineage4.3
|
None
|
ERR7910975
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
ERR5864802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291100
|
Pre-XDR-TB
|
lineage1.2.1.2
|
None
|
ERR2984797
|
XDR-TB
|
lineage4.3.4.2
|
None
|
SRR14802077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291053
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29273861
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7657749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1664639
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1034895
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR1035240
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR22175193
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR275230
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR2513241
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4276910
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035222
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR553196
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR386992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827781
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10303291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1815555
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR13286163
|
XDR-TB
|
lineage1.2.2.2
|
None
|
ERR9992683
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR5153713
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29273839
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR11662425
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR1035175
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR11774905
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093120
|
XDR-TB
|
lineage2.2.2
|
None
|
DRR130151
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR192451
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516711
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR11082026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975976
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR1664652
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR11798533
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035235
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR1664642
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1664646
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1353081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273928
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9992666
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR1664662
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR9993046
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993196
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR11773816
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26139263
|
Other
|
lineage4.9
|
None
|
ERR7361993
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13276342
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801831
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11081338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093955
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR1664637
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1815552
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR9992614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR17856682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13249507
|
Pre-XDR-TB
|
lineage4.3
|
None
|
ERR13285061
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13261487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7362015
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR21277502
|
Other
|
lineage2.2.1
|
None
|
SRR14782568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1815551
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR9971057
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175439
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4797391
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11488553
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR8025697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26139264
|
Other
|
lineage4.9
|
None
|
SRR1167350
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2653135
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29274109
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4796454
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR25827631
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR10380123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR275203
|
XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR2307379
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782040
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830631
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274009
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR5486872
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797296
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR7755665
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043890
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR13288889
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1034846
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR4822355
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035192
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
ERR2510730
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR275191
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR1173448
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6807693
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR1664650
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR2653092
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR9992629
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403468
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SAMN02403492
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29056258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261467
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR9738485
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR1227528
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR2515802
|
Pre-XDR-TB
|
lineage1.2.2.2
|
za
|
ERR1664640
|
XDR-TB
|
lineage4.3.4.2
|
None
|
SRR29273610
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR2677396
|
Pre-XDR-TB
|
lineage4.1.2.1
|
de
|
SRR29273686
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4798362
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
DRR130182
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28339293
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1196575
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10610189
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR29055571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4808875
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR11774907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045507
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29274067
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR10762327
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR8975846
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR2653030
|
HR-TB
|
lineage4.3.4.1
|
None
|
SRR30180264
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827746
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18593216
|
Pre-XDR-TB
|
lineage1.1.2;lineage4
|
None
|
SRR21576591
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992977
|
XDR-TB
|
lineage2.2.2
|
None
|