Rv3423c - p.Ser22Leu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
3 HR-TB
51 MDR-TB
155 Pre-XDR-TB
22 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 5 |
| lineage2.2.1 | 106 |
| lineage4.5 | 3 |
| lineage4.1.2.1 | 17 |
| lineage1.2.2.2 | 3 |
| lineage2.2.2 | 30 |
| lineage4.3.3 | 40 |
| lineage4.2.1 | 18 |
| lineage4.8 | 4 |
| lineage4.1.1.3 | 1 |
| lineage2.2.2;lineage4.4.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.4.1 | 1 |
| lineage2.2.2;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 233 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831449 | Pre-XDR-TB | lineage3 | None | ERR5758331 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576641 | MDR-TB | lineage4.5 | None | SRR3085325 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517023 | Pre-XDR-TB | lineage3 | gb | ERR4817106 | HR-TB | lineage4.1.2.1 | gb | ERR9992955 | MDR-TB | lineage1.2.2.2 | None | SRR29273934 | MDR-TB | lineage4.1.2.1 | None | ERR9806928 | Pre-XDR-TB | lineage2.2.1 | None | DRR130069 | Pre-XDR-TB | lineage2.2.1 | None | DRR130174 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873425 | Other | lineage2.2.1 | None | ERR8025685 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025705 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992763 | XDR-TB | lineage2.2.2 | None | ERR9119964 | MDR-TB | lineage4.3.3 | None | ERR8025594 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646041 | Pre-XDR-TB | lineage4.2.1 | None | SRR3085275 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093948 | MDR-TB | lineage2.2.1 | None | ERR5987203 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869269 | Pre-XDR-TB | lineage2.2.2 | None | ERR10748245 | MDR-TB | lineage4.3.3 | None | ERR9807041 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285877 | Pre-XDR-TB | lineage4.2.1 | None | SRR1013560 | Pre-XDR-TB | lineage2.2.2 | None | ERR4831572 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112848 | XDR-TB | lineage4.8 | None | ERR13258368 | Pre-XDR-TB | lineage2.2.1 | None | SRR8847017 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987215 | MDR-TB | lineage4.3.3 | None | ERR4423490 | MDR-TB | lineage4.3.3 | None | SRR29274756 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093947 | XDR-TB | lineage2.2.2 | None | ERR8025707 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056260 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093955 | XDR-TB | lineage2.2.2 | None | ERR5865855 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273919 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806914 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017350 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119972 | MDR-TB | lineage4.3.3 | None | SRR1013683 | Pre-XDR-TB | lineage2.2.2 | None | ERR5865856 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049068 | Pre-XDR-TB | lineage2.2.2 | None | SRR6807713 | Pre-XDR-TB | lineage4.2.1 | None | SRR29093122 | XDR-TB | lineage2.2.2 | None | SRR10525320 | MDR-TB | lineage4.1.2.1 | None | ERR4872283 | Pre-XDR-TB | lineage4.2.1 | None | ERR9807005 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755762 | Pre-XDR-TB | lineage4.2.1 | None | ERR8025523 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119963 | MDR-TB | lineage4.3.3 | None | ERR13284471 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743407 | Pre-XDR-TB | lineage2.2.1 | None | ERR552692 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044933 | XDR-TB | lineage2.2.1 | None | SRR611415 | MDR-TB | lineage2.2.1 | None | SRR14802011 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592340 | MDR-TB | lineage4.1.2.1 | None | ERR11488862 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869300 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096469 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755671 | Pre-XDR-TB | lineage4.2.1 | None | SRR29096484 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351354 | XDR-TB | lineage2.2.1 | None | SRR28045659 | Pre-XDR-TB | lineage4.3.3 | None | SRR7645867 | MDR-TB | lineage2.2.1 | None | ERR7911577 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911580 | Pre-XDR-TB | lineage2.2.1 | za | SRR29681404 | MDR-TB | lineage4.3.3 | None | ERR6052100 | MDR-TB | lineage4.3.3 | None | ERR9119743 | MDR-TB | lineage4.3.3 | None | ERR9993057 | XDR-TB | lineage1.2.2.2 | None | SRR1013559 | Pre-XDR-TB | lineage2.2.2 | None | SRR2075823 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576624 | MDR-TB | lineage4.5 | None | SRR10379956 | Pre-XDR-TB | lineage4.2.1 | None | SRR1173500 | Pre-XDR-TB | lineage2.2.2 | None | SRR3105791 | Pre-XDR-TB | lineage3 | None | SRR5486894 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR611416 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869095 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782651 | Pre-XDR-TB | lineage4.2.1 | None | SRR1013682 | Pre-XDR-TB | lineage2.2.2 | None | ERR13288939 | Pre-XDR-TB | lineage4.3.3 | None | ERR5987189 | MDR-TB | lineage4.3.3 | None | SRR29094002 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093366 | XDR-TB | lineage2.2.2;lineage4.4.2 | None | ERR9992694 | XDR-TB | lineage2.2.1 | None | ERR9120135 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755664 | Pre-XDR-TB | lineage4.2.1 | None | SRR29093373 | MDR-TB | lineage2.2.1 | None | SRR7516455 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743489 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025621 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866423 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992893 | XDR-TB | lineage4.3.3 | None | ERR9119809 | MDR-TB | lineage4.3.3 | None | ERR9992844 | XDR-TB | lineage2.2.2 | None | SRR2075818 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025753 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653081 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR551956 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048858 | Pre-XDR-TB | lineage2.2.2 | None | ERR552786 | Pre-XDR-TB | lineage2.2.1 | None | SRR6256976 | Pre-XDR-TB | lineage4.2.1 | ru | SRR28351194 | HR-TB | lineage2.2.1 | None | ERR5987211 | MDR-TB | lineage4.3.3 | None | ERR6052044 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262011 | XDR-TB | lineage2.2.1 | None | ERR9992986 | XDR-TB | lineage1.2.2.2 | None | DRR130107 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093367 | MDR-TB | lineage4.5 | None | SRR29093120 | XDR-TB | lineage2.2.2 | None | SRR2075817 | Pre-XDR-TB | lineage2.2.2 | None | ERR10762379 | Pre-XDR-TB | lineage4.2.1 | None | ERR13261202 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173405 | Pre-XDR-TB | lineage2.2.2 | None | ERR4896321 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119975 | MDR-TB | lineage4.3.3 | None | SRR29096417 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379979 | Pre-XDR-TB | lineage4.2.1 | None | ERR5987353 | MDR-TB | lineage4.3.3 | None | ERR4813131 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258448 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273798 | MDR-TB | lineage4.1.2.1 | None | ERR4796481 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758329 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987277 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273804 | MDR-TB | lineage4.1.2.1 | None | ERR13284317 | Pre-XDR-TB | lineage2.2.1 | None | ERR552554 | MDR-TB | lineage2.2.1 | None | ERR2307489 | HR-TB | lineage2.2.1 | None | ERR13260461 | XDR-TB | lineage2.2.1 | None | ERR9120081 | MDR-TB | lineage4.3.3 | None | SRR10525361 | MDR-TB | lineage4.1.2.1 | None | ERR10112865 | Pre-XDR-TB | lineage4.8 | None | SRR29055850 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025511 | Pre-XDR-TB | lineage2.2.1 | None | SRR1167310 | Pre-XDR-TB | lineage2.2.2 | None | SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | ERR4423543 | MDR-TB | lineage4.3.3 | None | SRR5163781 | Pre-XDR-TB | lineage4.2.1 | None | ERR8025513 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025616 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025535 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911208 | Pre-XDR-TB | lineage4.3.3 | za | SRR10869223 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025627 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025604 | Pre-XDR-TB | lineage2.2.1;lineage4.4.1.1 | None | ERR10748297 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310874 | MDR-TB | lineage4.2.1 | None | SRR14782620 | Pre-XDR-TB | lineage4.2.1 | None | ERR8025750 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2534314 | Pre-XDR-TB | lineage2.2.1 | ru | ERR1873477 | Pre-XDR-TB | lineage2.2.1 | za | SRR7341656 | MDR-TB | lineage4.8 | ro | SRR7341687 | Pre-XDR-TB | lineage4.8 | ro | ERR2516750 | Pre-XDR-TB | lineage3 | gb | ERR2516947 | Pre-XDR-TB | lineage3 | gb | ERR2516859 | MDR-TB | lineage4.1.2.1 | gb | ERR2517007 | MDR-TB | lineage4.1.2.1 | gb | ERR4872300 | Pre-XDR-TB | lineage4.2.1 | None | ERR7361989 | Pre-XDR-TB | lineage4.3.3 | None | SRR29093892 | MDR-TB | lineage4.3.3 | None | SRR2075822 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025526 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987371 | MDR-TB | lineage4.3.3 | None | SRR10397179 | Pre-XDR-TB | lineage2.2.1 | None | ERR551957 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085358 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987341 | MDR-TB | lineage4.3.3 | None | ERR9119976 | MDR-TB | lineage4.3.3 | None | ERR5987345 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987395 | MDR-TB | lineage4.3.3 | None | ERR6052072 | MDR-TB | lineage4.3.3 | None | SRR7755732 | Pre-XDR-TB | lineage2.2.1 | None | ERR9120111 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869189 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987284 | MDR-TB | lineage4.3.3 | None | SRR3743486 | Pre-XDR-TB | lineage4.2.1 | None | ERR9120082 | MDR-TB | lineage4.3.3 | None | SRR23310838 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273981 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806969 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806970 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165229 | Pre-XDR-TB | lineage2.2.2 | None | SRR29093123 | XDR-TB | lineage2.2.2 | None | ERR8025549 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362466 | MDR-TB | lineage4.3.3 | None | SRR998857 | Pre-XDR-TB | lineage4.2.1 | None | ERR13273367 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29273938 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9738549 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5758365 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866422 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423544 | MDR-TB | lineage4.3.3 | None | SRR29094027 | MDR-TB | lineage4.3.3 | None | ERR9119971 | MDR-TB | lineage4.3.3 | None | SRR29273732 | MDR-TB | lineage4.1.2.1 | None | SRR3082123 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806841 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025715 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011061 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048859 | Pre-XDR-TB | lineage2.2.2 | None | SRR29096307 | Pre-XDR-TB | lineage4.3.3 | None | ERR6052039 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653229 | Pre-XDR-TB | lineage4.4.1 | None | ERR5866421 | Pre-XDR-TB | lineage2.2.1 | None | SRR3086359 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093916 | XDR-TB | lineage2.2.2 | None | ERR8975752 | XDR-TB | lineage2.2.1 | None | ERR10610190 | Pre-XDR-TB | lineage4.3.3 | None | SRR29273670 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR18149468 | Pre-XDR-TB | lineage2.2.1 | None | ERR9120112 | Pre-XDR-TB | lineage2.2.1 | None | SAMN01925660 | Pre-XDR-TB | lineage4.3.3 | None | SRR16588747 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049069 | Pre-XDR-TB | lineage2.2.2 | None | SRR29093372 | XDR-TB | lineage2.2.2 | None | SRR29274102 | MDR-TB | lineage4.1.2.1 | None | SRR2075820 | Pre-XDR-TB | lineage2.2.2 | None | ERR551955 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093128 | XDR-TB | lineage2.2.2 | None | ERR13266506 | XDR-TB | lineage2.2.1 | None | SRR8426601 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539182 | Other | lineage2.2.1 | None | ERR9120134 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096344 | MDR-TB | lineage2.2.2;lineage4.3.3 | None | ERR7911543 | Pre-XDR-TB | lineage2.2.1 | za | SRR3086407 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423491 | MDR-TB | lineage4.3.3 | None |
|---|
