lineage | Count |
---|---|
lineage2.2.1 | 106 |
lineage4.8 | 23 |
lineage4.3.3 | 16 |
lineage3 | 31 |
lineage4.2.2.2 | 4 |
lineage2.2.1.1 | 7 |
lineage4.1.1.3 | 1 |
lineage4.1.2.1 | 22 |
lineage3.1.2 | 2 |
lineage4.1 | 1 |
lineage1.1.2 | 12 |
lineage1.2.2.2 | 6 |
lineage4.9 | 13 |
lineage4.3.4.2 | 3 |
lineage4.6.2.2 | 1 |
lineage3.1.2.1 | 3 |
lineage4;lineage3 | 1 |
lineage4.4.1.1 | 3 |
lineage4.2.1 | 8 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage1.1.3.1 | 2 |
lineage4.6 | 1 |
lineage3.1.1 | 3 |
lineage1.2.1.2 | 1 |
lineage4.7 | 2 |
lineage4.6.1.2 | 1 |
lineage2.2 | 20 |
lineage6.2.3 | 1 |
lineage4.1.2 | 1 |
lineage4.2.1.1 | 3 |
lineage4 | 1 |
lineage4.1.1 | 2 |
1 | |
lineage4.5 | 1 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage6.2.2 | 1 |
lineage4.3.1 | 1 |
spoligotype | Count |
---|---|
None | 307 |
ID | Drug resistance | Lineage | Country iso2 | ERR4830120 | MDR-TB | lineage2.2.1 | None | ERR4830957 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831315 | Sensitive | lineage4.8 | de | ERR4822618 | Sensitive | lineage4.3.3 | None | ERR4796764 | Other | lineage3 | in | ERR7911738 | MDR-TB | lineage2.2.1 | us | ERR4831201 | Sensitive | lineage4.8 | de | ERR4796333 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4822619 | Sensitive | lineage4.8 | None | ERR4831144 | Sensitive | lineage3 | de | ERR4831046 | Sensitive | lineage3 | np | ERR4830923 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796683 | MDR-TB | lineage2.2.1 | in | ERR4830034 | HR-TB | lineage2.2.1 | None | ERR4822393 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4822376 | Pre-XDR-TB | lineage2.2.1 | kg | ERR7911306 | MDR-TB | lineage2.2.1.1 | vn | ERR4822410 | Other | lineage2.2.1 | ua | ERR4831071 | MDR-TB | lineage3 | np | ERR4796791 | MDR-TB | lineage2.2.1 | in | ERR7910961 | MDR-TB | lineage2.2.1 | md | ERR4830918 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831000 | MDR-TB | lineage2.2.1 | de | ERR4797997 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4812087 | MDR-TB | lineage4.3.3 | None | ERR4830945 | Pre-XDR-TB | lineage3 | np | ERR4796692 | HR-TB | lineage4.1.2.1 | in | ERR4830060 | Sensitive | lineage2.2.1 | None | ERR4831248 | Sensitive | lineage4.8 | de | ERR4830135 | MDR-TB | lineage2.2.1 | None | ERR4796737 | Pre-XDR-TB | lineage2.2.1 | in | ERR4822629 | Other | lineage3 | None | ERR4830953 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797513 | Sensitive | lineage3.1.2 | in | ERR4831309 | Sensitive | lineage4.1 | de | ERR4796865 | Sensitive | lineage1.1.2 | in | ERR4831045 | Sensitive | lineage3 | np | ERR4831051 | MDR-TB | lineage4.8 | np | ERR4831183 | Sensitive | lineage4.8 | de | ERR4798464 | Sensitive | lineage1.1.2 | in | ERR4831084 | Sensitive | lineage1.2.2.2 | np | ERR4831037 | MDR-TB | lineage4.9 | np | ERR4831041 | Sensitive | lineage3 | np | ERR4813156 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4831012 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4822386 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4822542 | Sensitive | lineage4.8 | None | ERR4796716 | Sensitive | lineage3 | in | ERR4830166 | Sensitive | lineage4.8 | None | ERR4822475 | Other | lineage4.6.2.2 | de | ERR7910979 | MDR-TB | lineage2.2.1 | md | ERR4822447 | Sensitive | lineage4.3.3 | de | ERR4796689 | Pre-XDR-TB | lineage1.1.2 | in | ERR4830902 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831413 | HR-TB | lineage3 | de | ERR4822640 | Sensitive | lineage4.8 | None | ERR7911322 | MDR-TB | lineage2.2.1.1 | vn | ERR4831074 | Sensitive | lineage3.1.2.1 | np | ERR4830907 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830146 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796882 | HR-TB | lineage3 | in | ERR4831068 | Sensitive | lineage4;lineage3 | np | ERR4831127 | Other | lineage4.4.1.1 | de | ERR4830930 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4830142 | Other | lineage4.2.1 | None | ERR2677455 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | de | ERR4830129 | Sensitive | lineage2.2.1 | None | ERR4830899 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830029 | Sensitive | lineage2.2.1 | None | ERR4796717 | Sensitive | lineage1.1.2 | in | ERR4796724 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830070 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796709 | HR-TB | lineage1.1.2 | in | ERR7910978 | MDR-TB | lineage2.2.1 | md | ERR4831083 | Sensitive | lineage3 | np | ERR4831079 | Sensitive | lineage3 | np | ERR4830928 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830911 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911279 | MDR-TB | lineage2.2.1 | vn | ERR4822391 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4831009 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797561 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796827 | RR-TB | lineage2.2.1 | in | ERR4796426 | Sensitive | lineage1.1.3.1 | in | ERR4831038 | Sensitive | lineage2.2.1 | np | ERR4822449 | Sensitive | lineage2.2.1 | de | ERR4800486 | Sensitive | lineage3 | in | ERR4831090 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831120 | Sensitive | lineage4.6 | de | ERR4822396 | HR-TB | lineage2.2.1 | kg | ERR4797505 | Sensitive | lineage3 | in | ERR4830110 | Sensitive | lineage2.2.1 | tj | ERR4831081 | MDR-TB | lineage2.2.1 | np | ERR4799266 | Sensitive | lineage3 | in | ERR4830904 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR2677445 | Pre-XDR-TB | lineage2.2.1 | de | ERR2677427 | MDR-TB | lineage2.2.1 | de | ERR4831030 | Sensitive | lineage2.2.1 | np | ERR4796490 | HR-TB | lineage1.2.2.2 | in | ERR4822617 | Sensitive | lineage3.1.1 | None | ERR7911318 | MDR-TB | lineage2.2.1 | vn | ERR4831140 | Sensitive | lineage4.3.3 | de | ERR4796964 | Pre-XDR-TB | lineage2.2.1 | in | ERR7911278 | MDR-TB | lineage2.2.1 | vn | ERR4831007 | Pre-XDR-TB | lineage1.1.2 | np | ERR4831113 | Sensitive | lineage1.2.1.2 | de | ERR4831070 | Sensitive | lineage3 | np | ERR4830087 | HR-TB | lineage4.1.2.1 | None | ERR4830933 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797098 | Sensitive | lineage1.1.2 | in | ERR4831003 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4797812 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4831142 | Sensitive | lineage4.7 | de | ERR4830946 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4822504 | Sensitive | lineage4.8 | None | ERR4822639 | Sensitive | lineage4.6.1.2 | None | ERR4831262 | XDR-TB | lineage2.2.1 | de | ERR4831091 | Sensitive | lineage3 | np | ERR4831131 | Sensitive | lineage4.1.2.1 | de | ERR4822489 | Sensitive | lineage4.1.2.1 | de | ERR4822615 | Sensitive | lineage3.1.1 | None | ERR4796873 | Sensitive | lineage3.1.2 | in | ERR4831150 | Other | lineage1.1.2 | de | ERR4796879 | MDR-TB | lineage2.2.1 | in | ERR4822422 | Sensitive | lineage2.2.1 | None | ERR4830999 | Pre-XDR-TB | lineage2.2.1 | np | ERR2677439 | Pre-XDR-TB | lineage2.2.1 | de | ERR4831075 | Sensitive | lineage3.1.1 | np | ERR4822382 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4797504 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796638 | Sensitive | lineage1.1.2 | in | ERR7910958 | MDR-TB | lineage2.2 | None | ERR4830958 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830903 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831089 | Sensitive | lineage3 | np | ERR4831043 | Sensitive | lineage1.1.3.1 | np | ERR4830075 | MDR-TB | lineage2.2.1 | None | ERR4831296 | Sensitive | lineage4.1.2.1 | de | ERR10849240 | Sensitive | lineage6.2.3 | None | ERR4797108 | Pre-XDR-TB | lineage2.2.1 | in | SRR16087944 | MDR-TB | lineage2.2 | None | SRR16087883 | Other | lineage2.2 | None | SRR16087887 | HR-TB | lineage2.2 | None | SRR16088004 | Sensitive | lineage4.1.2 | None | SRR16087989 | Sensitive | lineage4.8 | None | SRR16088064 | MDR-TB | lineage2.2 | None | SRR16088003 | Sensitive | lineage4.8 | None | SRR16088230 | MDR-TB | lineage2.2 | None | SRR16088006 | Sensitive | lineage4.1.2.1 | None | SRR16088133 | HR-TB | lineage4.2.1.1 | None | SRR16088160 | Sensitive | lineage4.1.2.1 | None | SRR16088200 | Sensitive | lineage2.2 | None | SRR16088242 | HR-TB | lineage4 | None | SRR16088238 | Sensitive | lineage4.2.1 | None | SRR16088315 | Other | lineage2.2 | None | SRR16088355 | Sensitive | lineage4.3.3 | None | SRR16088321 | Sensitive | lineage4.3.3 | None | SRR16088322 | MDR-TB | lineage4.8 | None | SRR16088301 | Sensitive | lineage4.3.3 | None | SRR16088302 | Sensitive | lineage4.3.3 | None | SRR16088362 | Sensitive | lineage4.8 | None | SRR16088373 | Sensitive | lineage4.8 | None | SRR16088525 | Sensitive | lineage4.2.1.1 | None | SRR16088459 | Sensitive | lineage4.8 | None | SRR16088478 | MDR-TB | lineage4.2.1 | None | SRR16088426 | MDR-TB | lineage2.2 | None | SRR16088512 | Sensitive | lineage4.3.3 | None | SRR16088511 | Sensitive | lineage4.1.2.1 | None | SRR16088529 | Other | lineage4.3.3 | None | SRR16088524 | MDR-TB | lineage4.3.3 | None | SRR16088516 | Sensitive | lineage4.2.1.1 | None | SRR16088531 | MDR-TB | lineage2.2 | None | SRR23310835 | Other | lineage4.8 | None | SRR16088575 | MDR-TB | lineage2.2 | None | SRR23082544 | Sensitive | lineage4.9 | None | SRR18714918 | MDR-TB | lineage2.2 | None | SRR22528520 | MDR-TB | lineage4.3.3 | None | SRR22528522 | HR-TB | lineage4.1.1 | None | SRR22528582 | Pre-XDR-TB | lineage4.1.1 | None | SRR23071813 | Sensitive | lineage4.9 | None | SRR23082917 | Other | lineage4.9 | None | SRR20970049 | HR-TB | lineage2.2 | None | SRR23310864 | MDR-TB | lineage2.2 | None | SRR23310935 | MDR-TB | lineage4.2.1 | None | SRR23310921 | MDR-TB | lineage2.2 | None | SRR23310876 | MDR-TB | lineage2.2 | None | SRR23310925 | MDR-TB | lineage4.2.1 | None | SRR23310965 | MDR-TB | lineage4.2.1 | None | SRR23310938 | MDR-TB | lineage4.2.1 | None | SRR23310995 | Pre-XDR-TB | lineage2.2 | None | SRR23310986 | MDR-TB | lineage2.2 | None | SRR23310976 | MDR-TB | lineage2.2 | None | SRR23310996 | HR-TB | lineage4.1.2.1 | None | SRR23311017 | Sensitive | lineage4.7 | None | SRR23071815 | Sensitive | lineage4.9 | None | SRR23311076 | MDR-TB | lineage2.2 | None | SRR23071816 | RR-TB | lineage4.9 | None | SRR23082546 | Sensitive | lineage4.9 | None | SRR23071990 | RR-TB | lineage4.9 | None | SRR23082913 | Other | lineage4.9 | None | SRR23082914 | Sensitive | lineage4.9 | None | SRR23082545 | Sensitive | lineage4.9 | None | ERR4831242 | MDR-TB | lineage4.1.2.1 | de | ERR4796783 | Sensitive | lineage4.9 | in | SRR23691389 | MDR-TB | lineage2.2.1 | None | ERR4796892 | Pre-XDR-TB | lineage2.2.1 | in | ERR7911316 | MDR-TB | lineage2.2.1 | vn | ERR4830082 | Sensitive | lineage2.2.1 | None | ERR4822388 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4830179 | Sensitive | lineage4.3.3 | None | ERR4830992 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796661 | HR-TB | in | ERR4830019 | Sensitive | lineage4.5 | None | ERR4822622 | Sensitive | lineage4.1.2.1 | None | ERR4831025 | HR-TB | lineage3 | np | ERR4822399 | Pre-XDR-TB | lineage4.3.4.2 | ua | ERR4830989 | Pre-XDR-TB | lineage4.3.3 | np | ERR4822496 | Sensitive | lineage4.8 | de | ERR4796338 | Sensitive | lineage3 | in | ERR4831123 | Sensitive | lineage4.3.4.2 | de | ERR4796375 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830913 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831342 | Sensitive | lineage4.4.1.1 | de | ERR4831167 | XDR-TB | lineage2.2.1 | de | ERR4831080 | Sensitive | lineage3 | np | ERR4797502 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831180 | Sensitive | lineage4.3.3 | de | ERR4830181 | MDR-TB | lineage2.2.1 | None | ERR4831129 | Sensitive | lineage4.1.2.1 | de | ERR4830908 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831260 | MDR-TB | lineage4.1.2.1 | de | ERR4830086 | Sensitive | lineage4.8 | None | ERR4831072 | Sensitive | lineage3 | np | ERR4796703 | MDR-TB | lineage4.8 | in | ERR4798138 | Pre-XDR-TB | lineage2.2.1 | in | ERR4822420 | MDR-TB | lineage2.2.1 | ua | ERR4831295 | Sensitive | lineage4.1.2.1 | de | ERR4830972 | MDR-TB | lineage2.2.1 | np | ERR4797568 | Sensitive | lineage3.1.2.1 | in | ERR4822634 | Sensitive | lineage4.1.2.1 | None | ERR4831178 | HR-TB | lineage4.2.2.2 | de | ERR4830912 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796876 | MDR-TB | lineage3.1.2.1 | in | ERR4796451 | HR-TB | lineage3 | in | ERR2677449 | MDR-TB | lineage2.2.1 | de | ERR4822620 | Sensitive | lineage4.9 | None | ERR4831139 | Sensitive | lineage4.1.2.1 | de | ERR4830950 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831284 | Sensitive | lineage4.1.2.1 | de | ERR4831278 | Sensitive | lineage1.1.2 | de | ERR4831040 | Sensitive | lineage2.2.1 | np | ERR4830982 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830894 | Sensitive | lineage2.2.1 | None | ERR4831032 | Sensitive | lineage2.2.1 | np | ERR4831022 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831179 | Sensitive | lineage3 | de | ERR4796698 | MDR-TB | lineage2.2.1 | in | ERR4830974 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830025 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830942 | Pre-XDR-TB | lineage2.2.1 | np | ERR2677452 | Pre-XDR-TB | lineage4.2.1 | de | ERR4831019 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796747 | Sensitive | lineage1.1.2 | in | ERR4831363 | Sensitive | lineage4.8 | de | ERR4830145 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796653 | HR-TB | lineage1.2.2.2 | in | ERR4831205 | Sensitive | lineage4.4.1.1 | de | ERR4831064 | Other | lineage3 | np | ERR4798432 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796778 | Sensitive | lineage1.2.2.2 | in | ERR4831253 | XDR-TB | lineage2.2.1 | de | ERR4798520 | Sensitive | lineage3 | in | ERR4831115 | Sensitive | lineage4.1.2.1 | de | ERR4796656 | Sensitive | lineage3 | in | ERR4831287 | Sensitive | lineage4.1.2.1 | de | ERR4822403 | Pre-XDR-TB | lineage2.2.1 | ua | ERR4830090 | RR-TB | lineage2.2.1 | None | ERR4830156 | RR-TB | lineage2.2.1 | None | ERR4830901 | Pre-XDR-TB | lineage2.2.1 | np | ERR4822632 | Sensitive | lineage4.8 | None | ERR4796839 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830092 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | ERR4831106 | MDR-TB | lineage2.2.1 | de | ERR4831065 | Sensitive | lineage3 | np | ERR4797018 | MDR-TB | lineage4.3.3 | in | ERR4831314 | Sensitive | lineage4.1.2.1 | de | ERR4830140 | MDR-TB | lineage2.2.1 | None | ERR4830971 | Pre-XDR-TB | lineage2.2.1 | np | ERR4799285 | Pre-XDR-TB | lineage2.2.1 | in | ERR4822638 | Sensitive | lineage4.1.2.1 | None | ERR4796858 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797758 | Pre-XDR-TB | lineage1.1.2 | in | ERR4822626 | Sensitive | lineage4.8 | None | ERR7910963 | MDR-TB | lineage2.2.1 | md | ERR4831063 | Sensitive | lineage2.2.1 | np | ERR7911309 | MDR-TB | lineage2.2.1 | vn | ERR4830144 | Other | lineage4.1.2.1 | None | ERR4798543 | HR-TB | lineage1.2.2.2 | in | ERR4796701 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831263 | Sensitive | lineage6.2.2 | de | ERR4796942 | Other | lineage3 | in | ERR4830154 | MDR-TB | lineage2.2.1 | None | ERR2677428 | Pre-XDR-TB | lineage2.2.1 | de | ERR4797495 | Sensitive | lineage3 | in | ERR4797579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830988 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831157 | Sensitive | lineage4.3.1 | de |
---|