Run ID: SRR23650985
Sample name:
Date: 17-01-2024 09:49:29
Number of reads: 11465612
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
katG | 2154454 | p.Glu553Val | missense_variant | 0.18 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.25 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.24 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.24 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.19 |
embB | 4247039 | p.Phe176Val | missense_variant | 0.14 |