Rv3794 - c.1995C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
0 RR-TB
4 HR-TB
53 MDR-TB
27 Pre-XDR-TB
3 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 4 |
| lineage2.2.1 | 42 |
| lineage1.1.2 | 2 |
| lineage2.2.2 | 5 |
| lineage4.4.1.1 | 3 |
| lineage1.2.2.2 | 2 |
| lineage3 | 4 |
| lineage4.3.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.9 | 8 |
| lineage4.1.2.1 | 1 |
| lineage1.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.8 | 1 |
| lineage3.1.2 | 2 |
| lineage5 | 3 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage6.2.2 | 1 |
| lineage4.5 | 2 |
| lineage4.3.2.1 | 2 |
| lineage2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9119624 | MDR-TB | lineage4.6.2.2 | None | SRR24256164 | HR-TB | lineage2.2.1 | None | SRR25827811 | MDR-TB | lineage1.1.2 | None | SRR11662253 | Pre-XDR-TB | lineage2.2.2 | None | ERR3639777 | MDR-TB | lineage4.4.1.1 | None | ERR11488434 | MDR-TB | lineage1.2.2.2 | None | SRR25827387 | Pre-XDR-TB | lineage3 | None | SRR671722 | MDR-TB | lineage2.2.1 | cn | SRR5153269 | MDR-TB | lineage2.2.1 | None | SRR13180388 | MDR-TB | lineage2.2.1 | None | ERR11050531 | MDR-TB | lineage4.3.1 | None | SRR14802189 | MDR-TB | lineage2.2.1 | None | SRR15506912 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872230 | MDR-TB | lineage4.6.2.2 | None | SRR15368898 | MDR-TB | lineage4.4.2 | None | SRR17712103 | Sensitive | lineage2.2.1 | None | ERR13292581 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277865 | MDR-TB | lineage4.4.2 | None | SRR12142329 | MDR-TB | lineage2.2.1 | None | SRR12420618 | MDR-TB | lineage2.2.1 | None | ERR5865994 | MDR-TB | lineage2.2.1 | None | SRR29772383 | MDR-TB | lineage1.1.2 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR3132076 | MDR-TB | lineage2.2.2 | None | SRR5341312 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289388 | XDR-TB | lineage4.9 | None | ERR11775627 | MDR-TB | lineage2.2.1 | None | ERR10762235 | MDR-TB | lineage2.2.1 | None | SRR29289213 | Pre-XDR-TB | lineage4.9 | None | SRR29289221 | Pre-XDR-TB | lineage4.9 | None | SRR29289139 | Pre-XDR-TB | lineage4.9 | None | SRR29289172 | Pre-XDR-TB | lineage4.9 | None | ERR552101 | MDR-TB | lineage2.2.1 | None | SRR12142326 | MDR-TB | lineage2.2.1 | None | ERR4798587 | MDR-TB | lineage4.1.2.1 | in | SRR11662626 | MDR-TB | lineage1.1.1 | None | ERR11044606 | MDR-TB | lineage4.6.2.2 | None | SRR27069371 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142350 | MDR-TB | lineage2.2.1 | None | SRR28393661 | MDR-TB | lineage4.3.4.2 | None | SRR27069452 | Pre-XDR-TB | lineage2.2.1 | None | ERR502901 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358844 | MDR-TB | lineage4.3.4.2.1 | None | SRR3105733 | Pre-XDR-TB | lineage3 | None | SAMEA2534413 | MDR-TB | lineage2.2.1 | uz | ERR552662 | MDR-TB | lineage4.4.1.1 | None | SRR2100390 | MDR-TB | lineage2.2.1 | None | SRR28044893 | MDR-TB | lineage4.8 | None | SRR28045814 | Pre-XDR-TB | lineage3 | None | SRR21276940 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662635 | Pre-XDR-TB | lineage2.2.2 | None | SRR7585438 | XDR-TB | lineage3.1.2 | in | ERR1213851 | MDR-TB | lineage2.2.2 | kr | SRR3743487 | Pre-XDR-TB | lineage2.2.1 | None | ERR4192407 | Sensitive | lineage5 | None | ERR117735 | MDR-TB | lineage2.2.1 | None | ERR11488435 | MDR-TB | lineage1.2.2.2 | None | ERR13286150 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR22424813 | Pre-XDR-TB | lineage3.1.2 | None | ERR10680147 | MDR-TB | lineage6.2.2 | None | SRR30180409 | MDR-TB | lineage4.5 | None | ERR11082887 | MDR-TB | lineage4.4.1.1 | None | ERR10762373 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987437 | MDR-TB | lineage4.3.2.1 | None | SRR11662532 | MDR-TB | lineage1.1.1 | None | ERR7737831 | MDR-TB | lineage2.2.1 | None | ERR11798575 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285722 | MDR-TB | lineage2.2.1 | None | ERR12328150 | HR-TB | lineage2.2.1 | None | SRR29093920 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937077 | MDR-TB | lineage2.2.1 | None | SRR22873597 | Pre-XDR-TB | lineage2.2.1 | None | ERR4192386 | Sensitive | lineage5 | None | SRR12420636 | MDR-TB | lineage4.5 | None | ERR552102 | MDR-TB | lineage2.2.1 | None | SRR23938613 | HR-TB | lineage2.2.1 | None | SRR17712081 | Sensitive | lineage2.2.1 | None | ERR2510592 | Pre-XDR-TB | lineage4.6.2.2 | pk | SRR29289119 | Pre-XDR-TB | lineage4.9 | None | SRR25827419 | Pre-XDR-TB | lineage3 | None | SRR29289219 | XDR-TB | lineage4.9 | None | SRR10040212 | MDR-TB | lineage2.2.1 | None | SRR29914414 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865995 | MDR-TB | lineage2.2.1 | None | ERR11050532 | MDR-TB | lineage4.3.1 | None | ERR4827553 | MDR-TB | lineage2.2.1 | None | ERR7911123 | MDR-TB | lineage2.2.2 | vn | ERR9119838 | MDR-TB | lineage4.3.2.1 | None | ERR4192544 | Sensitive | lineage5 | None | SRR11662666 | MDR-TB | lineage2.1 | None | ERR2516865 | MDR-TB | lineage2.2.1 | gb | ERR2516753 | MDR-TB | lineage1.2.1.2.1 | gb |
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