Rv3795 - c.916_918delATGinsGA
Drug resistance types
1 Sensitive
1 RR-TB
0 HR-TB
43 MDR-TB
36 Pre-XDR-TB
6 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 41 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage4.3.3;lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.1.3;lineage4.8 | 4 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
| lineage4.6.2.2;lineage6.3.1 | 2 |
| lineage2.2.1;lineage3 | 3 |
| lineage2.2.2;lineage4.4.1.1 | 1 |
| lineage2.2.1.2;lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage4.1 | 1 |
| lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage3 | 2 |
| lineage4.1.2.1 | 2 |
| lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.2.1.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage3.1.1;lineage4.3.3 | 3 |
| lineage4.6.2.2 | 1 |
| lineage2.2.1.2;lineage3 | 1 |
| lineage2.2.1;lineage3;lineage4 | 2 |
| lineage3;lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1;lineage4.4.1.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage2.2.1;lineage4.2.2;lineage4.4.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2;lineage4.1.1.3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 15 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9806942 | Pre-XDR-TB | lineage2.2.1 | None | ERR552586 | MDR-TB | lineage2.2.1 | None | ERR144586 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR9992901 | XDR-TB | lineage4.3.3;lineage4.4.1.1 | None | SRR15600375 | MDR-TB | lineage2.2.1.1 | None | ERR552585 | MDR-TB | lineage2.2.1 | None | SRR1167279 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | SRR25827356 | Pre-XDR-TB | lineage2.2.1.1;lineage2.2.1.2;lineage3 | None | ERR10748379 | MDR-TB | lineage2.2.1 | None | SRR998828 | Pre-XDR-TB | lineage4.6.2.2;lineage6.3.1 | None | SRR1165328 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | ERR552586_ERR552585 | MDR-TB | lineage2.2.1 | None | SRR25389520 | Pre-XDR-TB | lineage2.2.1 | None | ERR11489046 | MDR-TB | lineage2.2.1 | None | SRR25827885 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR16088069 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR10748138 | Pre-XDR-TB | lineage2.2.2;lineage4.4.1.1 | None | ERR4797994 | Pre-XDR-TB | lineage2.2.1.2;lineage4.1.1.3 | in | ERR3794362 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR552951_ERR552950 | MDR-TB | lineage2.2.1 | None | ERR10680190 | MDR-TB | lineage2.2.1 | None | ERR10680083 | MDR-TB | lineage4.1 | None | SRR28393663 | MDR-TB | lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | None | ERR2510445 | Pre-XDR-TB | lineage3 | pk | ERR2510471 | MDR-TB | lineage3 | pk | ERR3287880 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4799369 | Other | lineage3.1.2 | None | SRR1181072 | Pre-XDR-TB | lineage2.2.1 | None | ERR108494 | MDR-TB | lineage2.2.1 | ru | ERR1035013 | Pre-XDR-TB | lineage2.2.1 | za | SRR1173861 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | SRR18715333 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None | ERR552979 | MDR-TB | lineage4.3.4.2 | None | SRR1167183 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | SRR1173724 | MDR-TB | lineage4.1.1.3;lineage4.8 | None | SRR998825 | MDR-TB | lineage4.6.2.2;lineage6.3.1 | None | SRR10305617 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2534749 | MDR-TB | lineage2.2.1 | uz | ERR1679585 | MDR-TB | lineage4.6.2.2 | None | ERR3794512 | MDR-TB | lineage2.2.1 | None | SRR25827762 | Pre-XDR-TB | lineage2.2.1.2;lineage3 | None | SRR25827461 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR2307372 | MDR-TB | lineage2.2.1 | None | SRR25827428 | MDR-TB | lineage2.2.1;lineage3;lineage4 | None | SAMN02419556 | Pre-XDR-TB | lineage2.2.1 | by | SRR671854 | Pre-XDR-TB | lineage2.2.1 | cn | ERR8665742 | Pre-XDR-TB | lineage2.2.1 | None | SRR1159053 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069466 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706378 | MDR-TB | lineage2.2.1 | None | SRR1173789 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | SRR15600379 | MDR-TB | lineage2.2.1.1 | None | SRR25827381 | Pre-XDR-TB | lineage3;lineage4.3.4.2 | None | SRR7645874 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR10185953 | MDR-TB | lineage2.2.1 | None | ERR4020182 | MDR-TB | lineage4.3.4.2.1;lineage4.4.1.1 | None | SRR25207110 | XDR-TB | lineage2.2.1 | None | SRR25389521 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773865 | MDR-TB | lineage2.2.1 | None | SRR25827489 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | None | SRR1159154 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002873 | Pre-XDR-TB | lineage2.2.1;lineage4.2.2;lineage4.4.2 | None | ERR552951 | MDR-TB | lineage2.2.1 | None | SRR25827363 | MDR-TB | lineage2.2.1;lineage3 | None | SRR12420769 | MDR-TB | lineage2.2.1 | None | ERR3077954 | MDR-TB | lineage4.2.2.2 | None | SRR25827641 | XDR-TB | lineage2.2.1;lineage4 | None | ERR4810622 | XDR-TB | lineage2.2.1 | cn | SRR25827357 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3 | None | SRR1181097 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665743 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662465 | MDR-TB | lineage4.5 | None | SRR14807542 | RR-TB | lineage2.2.1 | None | ERR4822597 | Pre-XDR-TB | lineage2.2.1 | tm | ERR7911636 | Pre-XDR-TB | lineage2.2.2;lineage4.1.1.3 | za | ERR8773864 | MDR-TB | lineage2.2.1 | None | SAMN02403561 | MDR-TB | lineage2.2.1 | za | ERR10680195 | MDR-TB | lineage4.1.2.1 | None | SRR25827875 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | SRR12420320 | Sensitive | lineage2.2.1.1 | None | ERR8773904 | MDR-TB | lineage4.3.4.2 | None | SAMEA2535024 | MDR-TB | lineage2.2.1 | uz | SRR14801432 | MDR-TB | lineage2.2.1 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR234601 | Pre-XDR-TB | lineage2.2.1 | ru | SRR21746992 | MDR-TB | lineage2.2.1 | None | SRR1173518 | Pre-XDR-TB | lineage3.1.1;lineage4.3.3 | None | SRR24256243 | Pre-XDR-TB | lineage2.2.1 | None |
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