SRR14802098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665893
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802027
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802121
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807603
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107253
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356990
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2446459
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR552786
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829010
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR2516804
|
MDR-TB
|
lineage2.2.1
|
gb
|
SAMN02419634
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232685
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539004
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28435000
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539199
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239686
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801608
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5865051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872284
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872261
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488727
|
MDR-TB
|
lineage1.2.2.1
|
None
|
SRR6257019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807541
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10867699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284964
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276394
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10762455
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801607
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762483
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9027246
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807473
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR137282
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR23310885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29358139
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067696
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR108421
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR10465821
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516263
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR28498498
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827703
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2677457
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR2041744
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR5866116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827805
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807657
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665813
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510862
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR6914122
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762311
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR13284243
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822285
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13284263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866419
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802133
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807678
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR144570
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR234650
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR10380103
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397225
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831753
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798548
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762469
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310970
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807565
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911423
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR4872347
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351506
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR28351189
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539440
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153336
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498516
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12796618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351512
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539533
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310982
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866040
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781946
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8439237
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056131
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310911
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7910956
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14801956
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802151
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801969
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802125
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801987
|
HR-TB
|
lineage2.2.1
|
None
|
ERR551560
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866420
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351621
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351384
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351400
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257046
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068535
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
ERR11068627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24222957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866066
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR108477
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR2677403
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7655981
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710113
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR229995
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR228006
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4822401
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
SRR6257047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801330
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR14802099
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107249
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133899
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR5865170
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498390
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866182
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665982
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419611
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR23310827
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310829
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872269
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6831901
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801936
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR227976
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR14782096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827813
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872345
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866180
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29356694
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865307
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872350
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866067
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310976
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551726_ERR551727
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807571
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807594
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807636
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802119
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255978
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807658
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829118
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR13290336
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256196
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801927
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551235
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6914121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798551
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285536
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR234607
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR551239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762468
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807481
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR228028
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR16088252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033731
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510727
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR11068071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801924
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802109
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802129
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807683
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5153612
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516391
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762463
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21689583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798549
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801604
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865301
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539326
|
Other
|
lineage4.3.3
|
None
|
SRR14802081
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802116
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041783
|
Pre-XDR-TB
|
lineage2.2.1
|
rs
|
ERR4813173
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR144581
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR23310828
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807573
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828829
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11067750
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041742
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR10762456
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239971
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551236
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802063
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807578
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773815
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13292567
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911421
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR5153321
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865953
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865052
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351515
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290334
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498701
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539439
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498403
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681437
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539568
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10430390
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5152953
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807460
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232415
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232733
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831785
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782176
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807661
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232732
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351216
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR8363334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782588
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801999
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12311972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107254
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310841
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910979
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR12796621
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290335
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276303
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743490
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1002690
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802086
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865171
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551727
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232696
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802062
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6257052
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133982
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR14807556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807579
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR551613
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3275447
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR2307581
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307696
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517548
|
MDR-TB
|
lineage2.2.1
|
nl
|
SRR14802134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351613
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
SAMEA2534150
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2307381
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802154
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807639
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539424
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307459
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310984
|
HR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14802021
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276376
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830107
|
MDR-TB
|
lineage2.2.1
|
tj
|
ERR7910941
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533795
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163381
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285771
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830623
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865762
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257044
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762288
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310842
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866181
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917697
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR14807610
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11043260
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081512
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16087942
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865050
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865919
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866039
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801964
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807494
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807549
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807659
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310972
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14807632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR137271
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
ru
|
ERR4024807
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498700
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714848
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551726
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR117463
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR14802031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802262
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307373
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370531
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403306
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600529
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802087
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801591
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6865904
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10877874
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911744
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR29539302
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802097
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23310889
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR228037
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11798546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243552
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802164
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498648
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807682
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865557
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9027243
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551605
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041781
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR11798547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807456
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807459
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276865
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR552001
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866418
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380111
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807580
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1146283
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12916911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR015610
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107242
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801603
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14802100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827680
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802152
|
MDR-TB
|
lineage2.2.1;lineage4.3.3;lineage4.8
|
None
|
SRR13232731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807546
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807668
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715357
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8374277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11786863
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068626
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287493
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR14801507
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762294
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802004
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311059
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785511
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR027447
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR8773985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234632
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR14801500
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872290
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865053
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801593
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801943
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28434999
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276872
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801960
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29356705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088163
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7781512
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256270
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310906
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4827841
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28434983
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29341510
|
Other
|
lineage2.2.1
|
None
|
ERR5866161
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706391
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28435003
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498658
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351640
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393789
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498457
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351513
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR28706648
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239747
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498391
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311018
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2516910
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR13276265
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706572
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10303282
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430359
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802060
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11067955
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043735
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351192
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351610
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310971
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234566
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR234668
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR29539725
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02414878
|
MDR-TB
|
lineage2.2.1
|
se
|
ERR5865172
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802115
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827763
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1144755
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255944
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR117454
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR14801880
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163339
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|