| lineage | Count |
|---|---|
| lineage4.3.4.1 | 5 |
| lineage2.2.1 | 259 |
| lineage2.2.1.1 | 5 |
| lineage1.2.2.2;lineage4.3.3 | 1 |
| lineage5.1.5 | 1 |
| lineage4.3.3 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage1.1.3.1 | 2 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage3 | 4 |
| lineage1.2.2.2;lineage2.2.1 | 4 |
| La1.2.BCG | 2 |
| lineage1.1.1 | 1 |
| lineage3 | 4 |
| lineage3.1.2 | 5 |
| lineage2.2.1;lineage3.1.2 | 2 |
| lineage1.1.2;lineage2.2.1 | 3 |
| lineage2.2.1.1;lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4.1.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| spoligotype | Count |
|---|---|
| None | 311 |
| ID | Drug resistance | Lineage | Country iso2 | ERR6879039 | MDR-TB | lineage4.3.4.1 | None | SRR28351159 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266747 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175261 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13262011 | XDR-TB | lineage2.2.1 | None | SRR25827488 | MDR-TB | lineage1.2.2.2;lineage4.3.3 | None | SRR28045569 | MDR-TB | lineage2.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | ERR1023223 | MDR-TB | lineage5.1.5 | None | ERR13266978 | MDR-TB | lineage2.2.1 | None | SRR22175203 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267110 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755665 | Pre-XDR-TB | lineage4.3.3 | None | SRR29056333 | MDR-TB | lineage4.3.4.2.1 | None | ERR13266504 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266649 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290868 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261975 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266528 | XDR-TB | lineage2.2.1 | None | ERR13266665 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085252 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266500 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798668 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266598 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266859 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262157 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762273 | MDR-TB | lineage2.2.1 | None | ERR13266084 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261342 | MDR-TB | lineage2.2.1 | None | SRR25827744 | Pre-XDR-TB | lineage1.1.3.1;lineage2.2.1 | None | ERR4553632 | MDR-TB | lineage1.1.3.1 | None | SRR25827351 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR25827397 | XDR-TB | lineage2.2.1 | None | SRR22175191 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827350 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR13267085 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266477 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799902 | MDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR29289208 | XDR-TB | La1.2.BCG | None | ERR13266981 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827884 | XDR-TB | lineage2.2.1 | None | ERR4798622 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798804 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797213 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798762 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798457 | XDR-TB | lineage2.2.1 | in | ERR4797384 | Pre-XDR-TB | lineage2.2.1 | in | SRR29772647 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799290 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799448 | XDR-TB | lineage2.2.1 | in | ERR4799471 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799694 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798479 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799945 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798208 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799288 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799875 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798383 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798453 | MDR-TB | lineage2.2.1 | in | ERR4796335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798605 | XDR-TB | lineage2.2.1 | in | ERR4800212 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800599 | XDR-TB | lineage2.2.1 | in | ERR13262080 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR11662643 | HR-TB | lineage1.1.1 | None | SAMN02628506 | MDR-TB | lineage3 | ir | SRR21732689 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351272 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045927 | XDR-TB | lineage2.2.1 | None | SRR28045949 | Pre-XDR-TB | lineage2.2.1 | None | SRR28409566 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830953 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830954 | Pre-XDR-TB | lineage2.2.1 | np | SRR28351615 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830661 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830952 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830961 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831012 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4831014 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831001 | Pre-XDR-TB | lineage2.2.1 | np | SRR25827704 | XDR-TB | lineage2.2.1 | None | ERR13266655 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796276 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266451 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800619 | MDR-TB | lineage2.2.1 | None | SRR1173572 | MDR-TB | lineage3 | None | ERR13266484 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510694 | Pre-XDR-TB | lineage2.2.1 | it | SRR21732571 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827677 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261226 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260968 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827482 | XDR-TB | lineage2.2.1 | None | ERR13285759 | MDR-TB | lineage2.2.1 | None | ERR13266858 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827487 | XDR-TB | lineage2.2.1;lineage3 | None | SRR25827370 | MDR-TB | lineage2.2.1;lineage3 | None | ERR13261395 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799789 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706384 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266857 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424853 | MDR-TB | lineage2.2.1 | None | ERR4796282 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827299 | MDR-TB | lineage2.2.1 | None | ERR4798942 | XDR-TB | lineage3.1.2 | in | ERR4797390 | MDR-TB | lineage2.2.1 | in | ERR4797432 | MDR-TB | lineage2.2.1 | in | ERR4798728 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797710 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796794 | MDR-TB | lineage2.2.1 | in | ERR4796884 | MDR-TB | lineage2.2.1 | in | ERR4796939 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797015 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796999 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798291 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798349 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798396 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798509 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | in | ERR4798497 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798857 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797858 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797084 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799139 | MDR-TB | lineage2.2.1 | in | ERR4799152 | MDR-TB | lineage2.2.1 | in | ERR4799229 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799361 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797334 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799654 | MDR-TB | lineage2.2.1 | in | ERR4799637 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797549 | MDR-TB | lineage2.2.1 | in | ERR4799001 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266506 | XDR-TB | lineage2.2.1 | None | ERR4799093 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796746 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796793 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799909 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796984 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175247 | XDR-TB | lineage2.2.1 | None | ERR4798759 | MDR-TB | lineage2.2.1 | in | ERR13262037 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798811 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798806 | MDR-TB | lineage2.2.1 | in | ERR13290866 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772556 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351319 | Pre-XDR-TB | lineage2.2.1 | None | SRR8380939 | Pre-XDR-TB | lineage2.2.1 | in | SRR28393556 | MDR-TB | lineage4.3.3 | None | SRR28393261 | MDR-TB | lineage4.3.4.1 | None | SRR28351432 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045543 | MDR-TB | lineage2.2.1 | None | SRR28045908 | XDR-TB | lineage2.2.1 | None | SRR28351485 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351354 | XDR-TB | lineage2.2.1 | None | ERR4830939 | Pre-XDR-TB | lineage2.2.1 | np | SRR28351359 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830662 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830913 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830977 | Pre-XDR-TB | lineage2.2.1 | np | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR25827620 | XDR-TB | lineage2.2.1 | None | SRR28351567 | Pre-XDR-TB | lineage2.2.1 | None | SRR8380875 | MDR-TB | lineage3 | in | SRR22175257 | MDR-TB | lineage2.2.1 | None | ERR1034764 | MDR-TB | lineage4.3.4.1 | pe | SRR25827807 | Pre-XDR-TB | lineage3.1.2 | None | SRR7645858 | Pre-XDR-TB | lineage4.3.3 | None | ERR11049830 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798617 | XDR-TB | lineage2.2.1 | in | ERR4798875 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799830 | XDR-TB | lineage2.2.1 | in | ERR4800471 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799379 | Pre-XDR-TB | lineage2.2.1 | in | SRR14781842 | HR-TB | lineage2.2.1 | None | ERR4799508 | XDR-TB | lineage2.2.1 | in | ERR4799900 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799681 | XDR-TB | lineage2.2.1 | in | SRR25827601 | XDR-TB | lineage2.2.1.1 | None | SRR5153930 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262062 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797704 | MDR-TB | lineage2.2.1 | in | SRR6896339 | MDR-TB | lineage2.2.1 | None | SRR2101312 | MDR-TB | lineage2.2.1 | None | ERR13266718 | MDR-TB | lineage2.2.1 | None | ERR13266540 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261997 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261101 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017615 | MDR-TB | lineage1.1.3.1 | None | SRR28351520 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266667 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266862 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261306 | MDR-TB | lineage2.2.1 | None | SRR22175187 | XDR-TB | lineage1.1.2;lineage2.2.1 | None | ERR13266934 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307490 | MDR-TB | lineage2.2.1 | None | SRR22175239 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR25827503 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267071 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424726 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827717 | Pre-XDR-TB | lineage2.2.1.1;lineage3;lineage4 | None | ERR13266754 | MDR-TB | lineage2.2.1 | None | SRR28351283 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR11049819 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262116 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266929 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827435 | XDR-TB | lineage2.2.1.1 | None | ERR13262020 | XDR-TB | lineage2.2.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261499 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262002 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289427 | XDR-TB | La1.2.BCG | None | ERR13261978 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772437 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800557 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2 | in | ERR4796375 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796525 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796722 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796761 | MDR-TB | lineage2.2.1 | in | SRR3743500 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796938 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797081 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796589 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799416 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799432 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797501 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799647 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799632 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797539 | MDR-TB | lineage2.2.1 | in | ERR4799674 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799870 | MDR-TB | lineage2.2.1 | in | ERR4799988 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4800267 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800441 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800580 | MDR-TB | lineage2.2.1 | in | ERR4799082 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799219 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799216 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799338 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799385 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799526 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799570 | Pre-XDR-TB | lineage2.2.1;lineage3 | in | ERR4797697 | MDR-TB | lineage2.2.1 | in | ERR4797712 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351230 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797896 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799158 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800276 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800287 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800321 | XDR-TB | lineage2.2.1 | in | ERR4800332 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799218 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800431 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798065 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798045 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800504 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800524 | Pre-XDR-TB | lineage2.2.1 | in | ERR11044053 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799285 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799309 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798318 | Pre-XDR-TB | lineage3.1.2 | in | ERR4799330 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796434 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799903 | Pre-XDR-TB | lineage3.1.2 | in | ERR4796514 | MDR-TB | lineage2.2.1 | in | ERR4798604 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799887 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796702 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796698 | MDR-TB | lineage2.2.1 | in | ERR4813394 | MDR-TB | lineage4.3.4.1 | pe | SRR22175208 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755756 | Pre-XDR-TB | lineage4.3.3 | None | SRR28119754 | MDR-TB | lineage2.2.1 | None | SRR28045562 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827745 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2.1 | None | ERR1034861 | Pre-XDR-TB | lineage2.2.1 | pt | SRR25827510 | XDR-TB | lineage2.2.1.2 | None | SRR25827672 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266145 | XDR-TB | lineage2.2.1 | None | SRR15014607 | MDR-TB | lineage3 | None | SRR29772588 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827550 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1 | None | ERR4813715 | MDR-TB | lineage4.3.4.1 | None | ERR13266931 | MDR-TB | lineage2.2.1 | None | ERR13266996 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799958 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261150 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510693 | Pre-XDR-TB | lineage2.2.1 | it | ERR4796894 | XDR-TB | lineage2.2.1 | in | ERR4797622 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | in | ERR4797971 | XDR-TB | lineage2.2.1 | in | ERR4798187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798292 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800293 | Pre-XDR-TB | lineage2.2.1 | in | ERR2510849 | Pre-XDR-TB | lineage2.2.1 | it | SRR22175197 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797111 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797525 | Pre-XDR-TB | lineage2.2.1 | in | SRR25827436 | MDR-TB | lineage2.2.1 | None | SRR22424728 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829823 | Pre-XDR-TB | lineage2.2.1 | it | ERR4829041 | Pre-XDR-TB | lineage2.2.1 | it | SRR28351362 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827538 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424792 | Pre-XDR-TB | lineage3.1.2 | None | SRR25827632 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | None |
|---|