lineage | Count |
---|---|
lineage2.2.1.1 | 17 |
lineage2.2.1 | 93 |
lineage4;lineage1.1.2 | 1 |
lineage1.1.1.1 | 1 |
lineage2.2.2 | 21 |
lineage3 | 11 |
lineage4.2.1 | 7 |
lineage4.2.2.2 | 1 |
lineage4.8 | 16 |
lineage4.6.2.2 | 1 |
lineage3.1.2.1 | 3 |
lineage4.4.1.1 | 4 |
lineage1.1.2 | 3 |
lineage4.3.4.2.1 | 1 |
lineage4.1.2.1 | 4 |
lineage4.3.4.2 | 10 |
lineage4.3 | 1 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.1.4 | 7 |
lineage1.2.1.2.1 | 2 |
lineage4.4.2 | 3 |
lineage4.3.3 | 4 |
lineage4.1.1 | 1 |
lineage3.1.2 | 1 |
lineage4.7 | 1 |
lineage4.1.2;lineage1.2.1.2.1 | 1 |
3 |
spoligotype | Count |
---|---|
None | 219 |
ID | Drug resistance | Lineage | Country iso2 | SRR16370556 | MDR-TB | lineage2.2.1.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR11662518 | MDR-TB | lineage2.2.1 | None | SRR18593216 | Pre-XDR-TB | lineage4;lineage1.1.2 | None | SRR25206918 | MDR-TB | lineage2.2.1.1 | None | DRR261159 | MDR-TB | lineage1.1.1.1 | None | SRR25207372 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207316 | MDR-TB | lineage2.2.1.1 | None | SRR21576619 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576539 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576706 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576691 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576716 | Pre-XDR-TB | lineage2.2.2 | None | SRR21747061 | Pre-XDR-TB | lineage2.2.2 | None | SRR21576724 | Pre-XDR-TB | lineage2.2.2 | None | SRR21887712 | MDR-TB | lineage2.2.1 | None | SRR21747022 | Pre-XDR-TB | lineage2.2.2 | None | SRR22175227 | Pre-XDR-TB | lineage3 | None | ERR11069108 | MDR-TB | lineage4.2.1 | None | ERR11081900 | MDR-TB | lineage4.2.2.2 | None | ERR9806942 | Pre-XDR-TB | lineage2.2.1 | None | SRR21747052 | Pre-XDR-TB | lineage2.2.2 | None | ERR11081510 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082745 | MDR-TB | lineage2.2.1 | None | ERR11138651 | MDR-TB | lineage2.2.1 | None | SRR21887682 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887779 | MDR-TB | lineage2.2.1 | None | SRR21887760 | Pre-XDR-TB | lineage2.2.1 | None | SRR3105741 | Pre-XDR-TB | lineage4.2.1 | None | SRR28239805 | HR-TB | lineage2.2.1 | None | SRR22873602 | Pre-XDR-TB | lineage2.2.1 | None | SRR24709936 | HR-TB | lineage4.8 | None | SAMN03246463 | Pre-XDR-TB | lineage2.2.1 | cn | SRR671855 | Pre-XDR-TB | lineage2.2.2 | cn | SRR3544726 | HR-TB | lineage2.2.1 | None | SRR6824523 | RR-TB | lineage2.2.1 | cn | ERR1679633 | MDR-TB | lineage4.6.2.2 | None | SRR6824636 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1034597 | Pre-XDR-TB | lineage3.1.2.1 | pk | ERR2200138 | Pre-XDR-TB | lineage2.2.1 | de | ERR2199837 | Pre-XDR-TB | lineage2.2.1 | de | ERR2200092 | RR-TB | lineage4.4.1.1 | rs | SRR6824453 | MDR-TB | lineage2.2.1 | cn | ERR2041745 | RR-TB | lineage4.4.1.1 | rs | SRR1723848 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1034717 | MDR-TB | lineage2.2.1 | pe | ERR1035013 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034738 | MDR-TB | lineage2.2.1 | pe | SAMN02419662 | Pre-XDR-TB | lineage2.2.1 | by | SRR5073998 | MDR-TB | lineage2.2.1.1 | vn | ERR2510593 | MDR-TB | lineage1.1.2 | None | SAMN02584593 | MDR-TB | lineage2.2.1 | md | ERR2433011 | MDR-TB | lineage4.3.4.2.1 | None | ERR464729 | MDR-TB | lineage4.4.1.1 | ch | ERR3276064 | Pre-XDR-TB | lineage4.1.2.1 | nl | ERR464730 | MDR-TB | lineage4.4.1.1 | ch | SAMN02584594 | MDR-TB | lineage2.2.1 | md | ERR1023395 | HR-TB | lineage2.2.1 | None | SAMEA2534411 | MDR-TB | lineage2.2.1 | uz | SRR5153837 | MDR-TB | lineage2.2.1 | None | ERR751383 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR779880 | MDR-TB | lineage4.3.4.2 | pe | ERR7911503 | MDR-TB | lineage2.2.1.1 | vn | ERR1193766 | HR-TB | lineage4.3 | np | ERR7911183 | MDR-TB | lineage2.2.1.1 | vn | SRR5153840 | HR-TB | lineage4.3.3;lineage2.2.1 | None | ERR7911121 | MDR-TB | lineage2.2.1.1 | vn | SAMN02414948 | MDR-TB | lineage4.1.4 | se | SRR6397957 | MDR-TB | lineage1.2.1.2.1 | ca | ERR551232 | HR-TB | lineage2.2.1 | de | SAMN02360604 | Pre-XDR-TB | lineage2.2.2 | kr | ERR553314 | HR-TB | lineage4.8 | None | SAMN02398708 | Pre-XDR-TB | lineage2.2.2 | kr | ERR1213910 | MDR-TB | lineage1.2.1.2.1 | ph | ERR751527 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4821041 | Other | lineage3 | None | SRR8651637 | Pre-XDR-TB | lineage4.4.2 | cn | ERR2677445 | Pre-XDR-TB | lineage2.2.1 | de | ERR1555057 | MDR-TB | lineage4.3.3 | None | SRR23339962 | HR-TB | lineage4.8 | None | ERR4822287 | Pre-XDR-TB | lineage2.2.1 | None | ERR1213892 | Other | lineage4.3.3 | pe | ERR2516532 | MDR-TB | lineage4.1.1 | pe | ERR2516980 | MDR-TB | lineage4.8 | gb | ERR3335762 | MDR-TB | lineage3 | pk | ERR1768629 | Pre-XDR-TB | lineage2.2.1 | de | ERR2199818 | Pre-XDR-TB | lineage2.2.1 | de | ERR4810947 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6485039 | MDR-TB | lineage4.1.2.1 | None | ERR4810484 | MDR-TB | lineage2.2.1 | cn | ERR11067328 | MDR-TB | lineage4.8 | None | ERR1768638 | Pre-XDR-TB | lineage2.2.1 | de | ERR4798323 | MDR-TB | lineage3.1.2 | in | ERR4822323 | Pre-XDR-TB | lineage2.2.1 | de | ERR4831725 | MDR-TB | lineage2.2.1.1 | None | ERR4800473 | Pre-XDR-TB | lineage3 | in | ERR4832043 | MDR-TB | lineage2.2.1 | None | ERR4832050 | MDR-TB | lineage2.2.1.1 | None | ERR4813386 | MDR-TB | lineage4.3.4.2 | pe | ERR4800474 | Pre-XDR-TB | lineage1.1.2 | in | SRR6832293 | MDR-TB | lineage2.2.1 | None | ERR5917703 | MDR-TB | lineage2.2.1 | by | SRR6930932 | MDR-TB | lineage4.8 | None | ERR3287589 | MDR-TB | lineage2.2.1 | pe | SRR6964666 | MDR-TB | lineage3 | None | ERR2510517 | Pre-XDR-TB | lineage3 | pk | SRR6964649 | MDR-TB | lineage3 | None | ERR3287478 | HR-TB | lineage4.3.4.2 | pe | ERR3287619 | MDR-TB | lineage4.3.4.2 | pe | ERR3287666 | MDR-TB | lineage4.3.4.2 | pe | ERR3287835 | MDR-TB | lineage4.3.4.2 | pe | ERR2510506 | MDR-TB | lineage3 | pk | ERR2510316 | MDR-TB | lineage1.1.2 | pk | ERR2510469 | Pre-XDR-TB | lineage3 | pk | ERR2510530 | Pre-XDR-TB | lineage3 | pk | ERR2184397 | MDR-TB | lineage2.2.1 | pe | ERR2984785 | MDR-TB | lineage4.7 | None | ERR2510453 | Pre-XDR-TB | lineage4.8 | pk | SRR9738488 | Pre-XDR-TB | lineage4.8 | None | ERR3132135 | Other | lineage4.3.3 | None | ERR3132157 | MDR-TB | lineage4.1.2;lineage1.2.1.2.1 | None | ERR2510650 | MDR-TB | lineage3 | pk | SRR7645919 | HR-TB | lineage4.8 | None | SRR833211 | Pre-XDR-TB | lineage2.2.2 | None | SRR7592384 | Pre-XDR-TB | lineage4.8 | None | SRR7592373 | Pre-XDR-TB | lineage2.2.1 | None | DRR130194 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646001 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646028 | Pre-XDR-TB | lineage2.2.1 | None | DRR130080 | Pre-XDR-TB | lineage2.2.2 | None | ERR10748492 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748197 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748368 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748449 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748161 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748572 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043438 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762473 | MDR-TB | lineage2.2.1 | None | ERR3639772 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043603 | MDR-TB | lineage4.1.4 | None | ERR11044171 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794443 | MDR-TB | lineage2.2.1 | None | ERR11049441 | MDR-TB | lineage4.2.1 | None | ERR4025027 | MDR-TB | lineage4.3.4.2 | None | ERR4024921 | MDR-TB | lineage4.3.4.2 | None | ERR4276896 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049465 | MDR-TB | lineage4.2.1 | None | ERR4553540 | MDR-TB | None | ERR4553487 | RR-TB | lineage3.1.2.1 | None | ERR4831598 | MDR-TB | lineage2.2.1.1 | vn | ERR4553607 | MDR-TB | None | ERR4553732 | MDR-TB | None | ERR2513690 | Other | lineage4.8 | gb | ERR4831599 | MDR-TB | lineage2.2.1.1 | vn | ERR4831720 | MDR-TB | lineage2.2.1.1 | vn | ERR4832028 | MDR-TB | lineage2.2.1.1 | vn | ERR4829394 | MDR-TB | lineage4.2.1 | None | ERR5866021 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865561 | MDR-TB | lineage2.2.1 | None | ERR5865562 | MDR-TB | lineage2.2.1 | None | ERR5866020 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865416 | MDR-TB | lineage4.3.4.2 | None | SRR17657960 | Other | lineage4.3.3 | None | ERR6879019 | MDR-TB | lineage2.2.1 | None | ERR6865475 | MDR-TB | lineage4.3.4.2 | None | ERR688029 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR6879032 | MDR-TB | lineage2.2.1 | None | ERR7737862 | MDR-TB | lineage2.2.1 | None | ERR7362006 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737659 | MDR-TB | lineage2.2.1.1 | None | SRR11662634 | MDR-TB | lineage2.2.1 | None | ERR9286014 | MDR-TB | lineage4.1.4 | None | ERR7975629 | XDR-TB | lineage2.2.1 | None | SRR10380060 | Pre-XDR-TB | lineage4.2.1 | None | ERR11050188 | Other | lineage4.8 | None | ERR9992759 | Pre-XDR-TB | lineage2.2.1 | None | SRR1011496 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013650 | Pre-XDR-TB | lineage2.2.2 | None | SRR10380117 | MDR-TB | lineage4.2.1 | None | SRR10397135 | HR-TB | lineage2.2.1 | None | SRR10397103 | HR-TB | lineage2.2.1 | None | SRR1049046 | Pre-XDR-TB | lineage2.2.2 | None | SRR10397157 | HR-TB | lineage2.2.1 | None | SRR1048010 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049047 | Pre-XDR-TB | lineage2.2.2 | None | SRR10869230 | MDR-TB | lineage2.2.1 | None | SRR10808621 | MDR-TB | lineage2.2.1 | None | SRR10808762 | MDR-TB | lineage2.2.1 | None | SRR10854752 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869240 | MDR-TB | lineage2.2.1 | None | SRR1144771 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144768 | Pre-XDR-TB | lineage2.2.2 | None | SRR11567800 | Pre-XDR-TB | lineage4.4.2 | None | SRR11567789 | Pre-XDR-TB | lineage4.4.2 | None | SRR1162877 | MDR-TB | lineage4.1.4 | None | SRR1162867 | MDR-TB | lineage4.1.4 | None | SRR1169006 | MDR-TB | lineage2.2.1 | None | SRR1163145 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165457 | MDR-TB | lineage4.1.4 | None | SRR1163325 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166085 | MDR-TB | lineage2.2.1 | None | SRR1166107 | MDR-TB | lineage2.2.1 | None | SRR1167058 | MDR-TB | lineage4.1.4 | None | SRR1169121 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169094 | MDR-TB | lineage2.2.1 | None | SRR13870370 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172219 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972195 | MDR-TB | lineage2.2.1.1 | None | SRR15316284 | RR-TB | lineage2.2.1 | None | SRR14801691 | HR-TB | lineage4.8 | None | SRR14801823 | HR-TB | lineage4.8 | None | SRR15316290 | RR-TB | lineage2.2.1 | None | SRR14801396 | MDR-TB | lineage4.8 | None | SRR14801817 | HR-TB | lineage4.8 | None | SRR15600356 | MDR-TB | lineage2.2.1.1 | None | SRR15316443 | Pre-XDR-TB | lineage2.2.1 | None | SRR15600391 | MDR-TB | lineage2.2.1.1 | None | SRR16156232 | MDR-TB | lineage2.2.1 | None | SRR16156274 | MDR-TB | lineage2.2.1 | None |
---|