Rv3806c - p.Lys174Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
90 MDR-TB
19 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.2.1 | 23 |
| lineage4.4.1.1.1 | 31 |
| lineage4.9.1 | 2 |
| lineage4.3.2.1 | 8 |
| lineage4.1.3 | 8 |
| lineage4.1.2.1 | 6 |
| lineage4.2.2 | 4 |
| lineage2.2.1 | 9 |
| lineage2.2.1.1 | 9 |
| lineage4.5 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1 | 1 |
| lineage4.4.2 | 2 |
| lineage4.6.5 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29274273 | MDR-TB | lineage4.2.2.1 | None | ERR10610070 | MDR-TB | lineage4.4.1.1.1 | None | ERR11069101 | MDR-TB | lineage4.9.1 | None | SAMN02585996 | MDR-TB | lineage4.3.2.1 | za | SAMN02586015 | MDR-TB | lineage4.4.1.1.1 | za | SRR16149137 | MDR-TB | lineage4.2.2.1 | None | ERR11775612 | MDR-TB | lineage4.4.1.1.1 | None | SRR998851 | MDR-TB | lineage4.1.3 | None | ERR2707019 | MDR-TB | lineage4.1.2.1 | cd | ERR502940 | MDR-TB | lineage4.2.2 | None | SRR1049976 | MDR-TB | lineage4.1.3 | None | SRR16149162 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR833135 | MDR-TB | lineage4.4.1.1.1 | None | SRR6824405 | MDR-TB | lineage4.2.2 | cn | ERR11069066 | MDR-TB | lineage4.2.2.1 | None | SRR29055615 | MDR-TB | lineage2.2.1 | None | SAMN02585983 | MDR-TB | lineage4.4.1.1.1 | za | SAMN02586001 | MDR-TB | lineage4.4.1.1.1 | za | SAMN02586033 | MDR-TB | lineage4.3.2.1 | za | SRR5065488 | MDR-TB | lineage2.2.1.1 | vn | SRR16149121 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR9993258 | XDR-TB | lineage4.4.1.1.1 | None | SRR1196480 | MDR-TB | lineage4.3.2.1 | None | SRR16149179 | MDR-TB | lineage4.2.2.1 | None | ERR9992836 | MDR-TB | lineage4.4.1.1.1 | None | ERR11082337 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR10040504 | MDR-TB | lineage2.2.1 | None | SRR998849 | MDR-TB | lineage4.1.3 | None | SRR1196570 | MDR-TB | lineage4.4.1.1.1 | None | SRR1173087 | MDR-TB | lineage4.4.1.1.1 | None | SRR1175329 | MDR-TB | lineage4.4.1.1.1 | None | SRR1175092 | MDR-TB | lineage4.3.2.1 | None | SRR1724009 | MDR-TB | lineage4.2.2 | cn | SRR29274272 | MDR-TB | lineage4.2.2.1 | None | SRR998835 | MDR-TB | lineage4.1.3 | None | SRR21277280 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173172 | MDR-TB | lineage4.3.2.1 | None | SRR29274265 | MDR-TB | lineage4.2.2.1 | None | SRR16149160 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR1184347 | MDR-TB | lineage4.4.1.1.1 | None | SRR10040519 | MDR-TB | lineage2.2.1 | None | ERR7737714 | MDR-TB | lineage4.4.1.1.1 | None | SRR1184354 | MDR-TB | lineage4.4.1.1.1 | None | SRR25207096 | Pre-XDR-TB | lineage4.5 | None | SRR833134 | MDR-TB | lineage4.4.1.1.1 | None | ERR11082782 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR4553710 | MDR-TB | lineage3.1.2.1 | None | SRR29274240 | MDR-TB | lineage4.2.2.1 | None | ERR9030436 | MDR-TB | lineage4.1.2.1 | None | SRR16149157 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR1175041 | MDR-TB | lineage4.4.1.1.1 | None | SRR29274269 | MDR-TB | lineage4.2.2.1 | None | SRR16149154 | MDR-TB | lineage4.2.2.1 | None | ERR13284561 | MDR-TB | lineage4.9.1 | None | ERR7910995 | Pre-XDR-TB | lineage4.1.1 | pe | SRR10040370 | MDR-TB | lineage4.4.2 | None | ERR4810471 | Pre-XDR-TB | lineage4.5 | cn | ERR4831911 | MDR-TB | lineage2.2.1.1 | vn | ERR4831976 | MDR-TB | lineage2.2.1.1 | None | SRR1196552 | MDR-TB | lineage4.3.2.1 | None | SAMN02053775 | MDR-TB | lineage4.4.1.1.1 | za | SAMN02053797 | MDR-TB | lineage4.4.1.1.1 | za | SRR847795 | MDR-TB | lineage4.4.1.1.1 | za | SRR847802 | MDR-TB | lineage4.4.1.1.1 | za | SRR5065608 | MDR-TB | lineage2.2.1.1 | vn | SRR833119 | MDR-TB | lineage4.4.1.1.1 | None | SRR924241 | MDR-TB | lineage4.4.1.1.1 | None | SRR998830 | MDR-TB | lineage4.1.3 | None | SRR1173522 | MDR-TB | lineage4.4.1.1.1 | None | SAMN01925676 | MDR-TB | lineage4.4.1.1.1 | None | SRR29231823 | MDR-TB | lineage4.1.2.1 | None | ERR2179670 | MDR-TB | lineage4.2.2 | cn | SRR16149131 | MDR-TB | lineage4.2.2.1 | None | SAMN01925684 | MDR-TB | lineage4.4.1.1.1 | None | SRR998850 | MDR-TB | lineage4.1.3 | None | ERR9806835 | MDR-TB | lineage4.4.1.1.1 | None | SRR1184345 | MDR-TB | lineage4.3.2.1 | None | SRR16149149 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR16149177 | MDR-TB | lineage4.2.2.1 | None | ERR13291118 | MDR-TB | lineage4.4.2 | None | SRR924236 | MDR-TB | lineage4.4.1.1.1 | None | SRR16149178 | MDR-TB | lineage4.2.2.1 | None | SRR4423165 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR4831952 | MDR-TB | lineage2.2.1.1 | vn | ERR4831894 | MDR-TB | lineage2.2.1.1 | None | ERR4831926 | MDR-TB | lineage2.2.1.1 | vn | ERR4831915 | MDR-TB | lineage2.2.1.1 | vn | ERR4831880 | MDR-TB | lineage2.2.1.1 | vn | SRR2024905 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024911 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024977 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2707159 | MDR-TB | lineage4.1.2.1 | cd | SRR1196785 | MDR-TB | lineage4.4.1.1.1 | None | ERR11775620 | MDR-TB | lineage4.4.1.1.1 | None | SRR29231705 | MDR-TB | lineage4.1.2.1 | None | SRR5818696 | MDR-TB | lineage4.6.5 | dj | SRR1184325 | MDR-TB | lineage4.3.2.1 | None | SRR29274243 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR2120267 | MDR-TB | lineage4.6.5 | None | ERR2120266 | MDR-TB | lineage4.6.5 | None | ERR13289262 | MDR-TB | lineage4.4.1.1.1 | None | ERR13277094 | Pre-XDR-TB | lineage4.2.2.1 | None | SRR998852 | MDR-TB | lineage4.1.3 | None | SRR16149181 | MDR-TB | lineage4.2.2.1 | None | SRR998829 | MDR-TB | lineage4.1.3 | None | SRR833109 | MDR-TB | lineage4.4.1.1.1 | None | ERR13284292 | MDR-TB | lineage4.2.2.1 | None | SRR6356977 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266831 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680135 | MDR-TB | lineage4.1.2.1 | None |
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