Rv3854c - c.-1080_576del
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
41 MDR-TB
225 Pre-XDR-TB
15 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 283 |
| lineage2.2.1;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 284 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4797288 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799159 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799877 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800286 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267026 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262165 | XDR-TB | lineage2.2.1 | None | ERR13266836 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800335 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797459 | MDR-TB | lineage2.2.1 | in | SRR22424794 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290586 | Pre-XDR-TB | lineage2.2.1 | None | SRR7068977 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266039 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796636 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266602 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797428 | MDR-TB | lineage2.2.1 | in | ERR4798689 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799355 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800067 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800439 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797856 | XDR-TB | lineage2.2.1 | in | ERR4799035 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797489 | MDR-TB | lineage2.2.1 | in | ERR11068484 | MDR-TB | lineage2.2.1 | None | ERR4796533 | MDR-TB | lineage2.2.1 | in | ERR13261966 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290856 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267005 | XDR-TB | lineage2.2.1 | None | ERR13266842 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261374 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799316 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797115 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800465 | MDR-TB | lineage2.2.1 | in | ERR4797878 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799690 | XDR-TB | lineage2.2.1 | in | SRR28351326 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351425 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796723 | MDR-TB | lineage2.2.1 | in | ERR4798892 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796633 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796891 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800347 | XDR-TB | lineage2.2.1 | None | ERR4796441 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799724 | MDR-TB | lineage2.2.1 | in | ERR4800597 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797808 | XDR-TB | lineage2.2.1 | in | ERR4798550 | Pre-XDR-TB | lineage2.2.1 | in | SRR28045664 | MDR-TB | lineage2.2.1 | None | ERR11044565 | MDR-TB | lineage2.2.1 | None | SRR28351573 | XDR-TB | lineage2.2.1 | None | ERR7162981 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266739 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799415 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800304 | Pre-XDR-TB | lineage2.2.1 | in | ERR7162984 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798585 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796879 | MDR-TB | lineage2.2.1 | in | ERR4797516 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798621 | Pre-XDR-TB | lineage2.2.1 | in | SRR1163462 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266936 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267113 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261530 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799675 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797340 | MDR-TB | lineage2.2.1 | in | ERR4797968 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798950 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266051 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163483 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266595 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260963 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267023 | MDR-TB | lineage2.2.1 | None | ERR13266962 | MDR-TB | lineage2.2.1 | None | ERR13290588 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424812 | MDR-TB | lineage2.2.1 | None | ERR13266601 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797426 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798133 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261240 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797563 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798260 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796602 | Pre-XDR-TB | lineage2.2.1 | in | ERR13267022 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261158 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261145 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798693 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797751 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261218 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797266 | Pre-XDR-TB | lineage2.2.1 | in | SRR28046122 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267132 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175253 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796377 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266419 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796672 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796397 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800653 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261546 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798037 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800166 | Pre-XDR-TB | lineage2.2.1 | None | SRR18149468 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266810 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799026 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798894 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261341 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231481 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02414964 | Pre-XDR-TB | lineage2.2.1 | se | ERR13266574 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796415 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266661 | XDR-TB | lineage2.2.1 | None | ERR4798698 | MDR-TB | lineage2.2.1 | in | ERR4798202 | Pre-XDR-TB | lineage2.2.1 | in | ERR13262105 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266631 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266783 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276145 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290589 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798174 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799341 | Pre-XDR-TB | lineage2.2.1 | in | SRR8380932 | MDR-TB | lineage2.2.1 | in | ERR4797162 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266724 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517090 | MDR-TB | lineage2.2.1 | gb | ERR13260980 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797992 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797051 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797754 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797523 | Pre-XDR-TB | lineage2.2.1 | in | SRR28045539 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799398 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800512 | Pre-XDR-TB | lineage2.2.1 | in | SRR22424821 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175242 | Pre-XDR-TB | lineage2.2.1 | None | SRR16100248 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261528 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267115 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553937 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796758 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796940 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798775 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798963 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799807 | MDR-TB | lineage2.2.1 | in | ERR4799419 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798900 | MDR-TB | lineage2.2.1 | in | ERR4799468 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799806 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800402 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800632 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797555 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797323 | MDR-TB | lineage2.2.1 | in | ERR4797113 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800560 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797811 | Pre-XDR-TB | lineage2.2.1 | in | SRR16058382 | MDR-TB | lineage2.2.1 | None | ERR4798483 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799217 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797399 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799697 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799860 | MDR-TB | lineage2.2.1 | in | ERR4798814 | MDR-TB | lineage2.2.1 | in | ERR4796706 | Pre-XDR-TB | lineage2.2.1 | in | SRR22424786 | MDR-TB | lineage2.2.1 | None | ERR13291803 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261247 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266910 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261383 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165376 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261986 | HR-TB | lineage2.2.1 | None | ERR13266887 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796585 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798665 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798902 | Pre-XDR-TB | lineage2.2.1 | in | SRR28858522 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261306 | MDR-TB | lineage2.2.1 | None | ERR13262096 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800558 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266084 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798677 | XDR-TB | lineage2.2.1 | in | ERR13266648 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797208 | MDR-TB | lineage2.2.1 | in | ERR13261974 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290870 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356683 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261278 | MDR-TB | lineage2.2.1 | None | ERR4796513 | Pre-XDR-TB | lineage2.2.1 | in | ERR13261355 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262064 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266947 | XDR-TB | lineage2.2.1 | None | ERR13266538 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796922 | Pre-XDR-TB | lineage2.2.1 | in | SRR7070032 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800248 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266560 | XDR-TB | lineage2.2.1 | None | ERR13266861 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796763 | Pre-XDR-TB | lineage2.2.1 | in | ERR13267116 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800093 | Other | lineage2.2.1 | None | ERR13261154 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261077 | Pre-XDR-TB | lineage2.2.1 | None | SRR1167138 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800425 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800682 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231198 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351435 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351583 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046140 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351193 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351271 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351489 | MDR-TB | lineage2.2.1 | None | SRR28351547 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798307 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799063 | MDR-TB | lineage2.2.1 | in | ERR4800672 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261480 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796960 | MDR-TB | lineage2.2.1;lineage3 | in | ERR4797132 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797722 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798498 | MDR-TB | lineage2.2.1 | in | ERR4799568 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800000 | Pre-XDR-TB | lineage2.2.1 | in | ERR13262163 | XDR-TB | lineage2.2.1 | None | ERR4818630 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261151 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266790 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799979 | HR-TB | lineage2.2.1 | in | SRR22175225 | XDR-TB | lineage2.2.1 | None | ERR4797596 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351165 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799132 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800546 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796711 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800213 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800513 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796839 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797824 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798663 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799409 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799564 | MDR-TB | lineage2.2.1 | in | ERR9125282 | MDR-TB | lineage2.2.1 | None | SRR22175206 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044474 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798082 | MDR-TB | lineage2.2.1 | in | ERR4796371 | Pre-XDR-TB | lineage2.2.1 | in | SRR18593229 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798948 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796543 | MDR-TB | lineage2.2.1 | in | ERR4798116 | MDR-TB | lineage2.2.1 | in | ERR4798930 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798780 | Pre-XDR-TB | lineage2.2.1 | in | ERR13266930 | XDR-TB | lineage2.2.1 | None | ERR4799523 | XDR-TB | lineage2.2.1 | in | ERR4799608 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799632 | Pre-XDR-TB | lineage2.2.1 | in | SRR29016755 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261281 | MDR-TB | lineage2.2.1 | None | ERR13290587 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796808 | Pre-XDR-TB | lineage2.2.1 | in | ERR13267111 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799255 | Pre-XDR-TB | lineage2.2.1 | in | ERR13267029 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796898 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799498 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800144 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796686 | MDR-TB | lineage2.2.1 | None | ERR13267066 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266879 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262091 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798090 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799971 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798402 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799616 | Pre-XDR-TB | lineage2.2.1 | in | SRR22424798 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266444 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262124 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796936 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797082 | Pre-XDR-TB | lineage2.2.1 | in | ERR13267121 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796522 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797922 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799701 | MDR-TB | lineage2.2.1 | in | SRR29230723 | MDR-TB | lineage2.2.1 | None | ERR13266426 | Pre-XDR-TB | lineage2.2.1 | None |
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