Rv3854c - c.-1080_576del
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
41 MDR-TB
208 Pre-XDR-TB
11 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 262 |
| lineage2.2.1;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 263 |
Geographic prevalence
Country level data for this variant is available for 206 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4799724 | MDR-TB | lineage2.2.1 | in | ERR4798550 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798621 | Pre-XDR-TB | lineage2.2.1 | in | ERR7162981 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799217 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796585 | Pre-XDR-TB | lineage2.2.1 | in | SRR8237317 | MDR-TB | lineage2.2.1 | np | SRR22424812 | MDR-TB | lineage2.2.1 | None | ERR4831027 | Pre-XDR-TB | lineage2.2.1 | np | ERR2517090 | MDR-TB | lineage2.2.1 | gb | ERR4800144 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830918 | Pre-XDR-TB | lineage2.2.1 | np | ERR11044474 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796891 | Pre-XDR-TB | lineage2.2.1 | in | SRR18593229 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797208 | MDR-TB | lineage2.2.1 | in | SRR22175242 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798563 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830919 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797811 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796522 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797268 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796441 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800248 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797288 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830914 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830991 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800335 | Pre-XDR-TB | lineage2.2.1 | in | SRR7068977 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830933 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830660 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798950 | Pre-XDR-TB | lineage2.2.1 | in | SRR1167138 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798902 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797044 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798174 | Pre-XDR-TB | lineage2.2.1 | in | ERR9125282 | MDR-TB | lineage2.2.1 | None | ERR4798663 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798689 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799498 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800347 | XDR-TB | lineage2.2.1 | None | ERR4799316 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800465 | MDR-TB | lineage2.2.1 | in | ERR4797754 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799991 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797523 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830987 | Pre-XDR-TB | lineage2.2.1 | np | ERR4799690 | XDR-TB | lineage2.2.1 | in | SRR28045664 | MDR-TB | lineage2.2.1 | None | SRR28351425 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046122 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045539 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351583 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046140 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351193 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351271 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799556 | MDR-TB | lineage2.2.1 | in | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799419 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797555 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797323 | MDR-TB | lineage2.2.1 | in | ERR4796763 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798585 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796711 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797266 | Pre-XDR-TB | lineage2.2.1 | in | ERR4553937 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800560 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797115 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830925 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798483 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830936 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830657 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830942 | Pre-XDR-TB | lineage2.2.1 | np | SRR22424786 | MDR-TB | lineage2.2.1 | None | ERR4797808 | XDR-TB | lineage2.2.1 | in | ERR4830939 | Pre-XDR-TB | lineage2.2.1 | np | SRR22175225 | XDR-TB | lineage2.2.1 | None | SRR22175206 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797363 | XDR-TB | lineage2.2.1 | in | ERR4830929 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796936 | Pre-XDR-TB | lineage2.2.1 | in | SRR1163462 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798930 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798780 | Pre-XDR-TB | lineage2.2.1 | in | ERR2513950 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4830901 | Pre-XDR-TB | lineage2.2.1 | np | SRR1165376 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830969 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798402 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796940 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800381 | XDR-TB | lineage2.2.1 | in | ERR4797824 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796513 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797113 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797563 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799468 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798260 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830998 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796686 | MDR-TB | lineage2.2.1 | None | ERR4799632 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797132 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799979 | HR-TB | lineage2.2.1 | in | ERR4798693 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797751 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799027 | HR-TB | lineage2.2.1 | in | ERR4798677 | XDR-TB | lineage2.2.1 | in | ERR4798892 | Pre-XDR-TB | lineage2.2.1 | in | SRR22424798 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796543 | MDR-TB | lineage2.2.1 | in | ERR4796377 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800304 | Pre-XDR-TB | lineage2.2.1 | in | ERR4814280 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4799806 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796808 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830976 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830995 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796397 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798037 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797340 | MDR-TB | lineage2.2.1 | in | SRR7070032 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798775 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831010 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800513 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800166 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830924 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797596 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830951 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798894 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796636 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830938 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797428 | MDR-TB | lineage2.2.1 | in | ERR4799409 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799355 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799159 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800439 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797856 | XDR-TB | lineage2.2.1 | in | ERR4799035 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797082 | Pre-XDR-TB | lineage2.2.1 | in | SAMN02414964 | Pre-XDR-TB | lineage2.2.1 | se | ERR4796415 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798698 | MDR-TB | lineage2.2.1 | in | ERR4798202 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796879 | MDR-TB | lineage2.2.1 | in | ERR4796758 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799077 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796533 | MDR-TB | lineage2.2.1 | in | ERR4830915 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798787 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799341 | Pre-XDR-TB | lineage2.2.1 | in | SRR8380932 | MDR-TB | lineage2.2.1 | in | ERR4797162 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799608 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799564 | MDR-TB | lineage2.2.1 | in | ERR4830903 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797992 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800425 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796917 | Pre-XDR-TB | lineage2.2.1 | in | SRR1163483 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799523 | XDR-TB | lineage2.2.1 | in | SRR22424821 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351326 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351435 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797525 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799415 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799877 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796723 | MDR-TB | lineage2.2.1 | in | ERR4796579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800512 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797722 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831028 | Pre-XDR-TB | lineage2.2.1 | np | ERR4797399 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799697 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799860 | MDR-TB | lineage2.2.1 | in | ERR4798814 | MDR-TB | lineage2.2.1 | in | ERR4796706 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830905 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798082 | MDR-TB | lineage2.2.1 | in | ERR4798665 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796371 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798948 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797516 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800067 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798498 | MDR-TB | lineage2.2.1 | in | ERR4800632 | Pre-XDR-TB | lineage2.2.1 | None | SRR18149468 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799255 | Pre-XDR-TB | lineage2.2.1 | in | SRR22175253 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796602 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799398 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798090 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799971 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830997 | Pre-XDR-TB | lineage2.2.1 | np | ERR2517038 | MDR-TB | lineage2.2.1 | gb | ERR4799616 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799063 | MDR-TB | lineage2.2.1 | in | ERR4800213 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830935 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800597 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058382 | MDR-TB | lineage2.2.1 | None | ERR4830985 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796960 | MDR-TB | lineage2.2.1;lineage3 | in | ERR4796672 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797922 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830928 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800653 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797564 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831009 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796922 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799701 | MDR-TB | lineage2.2.1 | in | ERR7162984 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831081 | MDR-TB | lineage2.2.1 | np | ERR4818630 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797459 | MDR-TB | lineage2.2.1 | in | SRR22424794 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800286 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800000 | Pre-XDR-TB | lineage2.2.1 | in | SRR16100248 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799026 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798900 | MDR-TB | lineage2.2.1 | in | ERR4798133 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798307 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797489 | MDR-TB | lineage2.2.1 | in | ERR4800093 | Other | lineage2.2.1 | None | ERR4800402 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516770 | MDR-TB | lineage2.2.1 | gb | ERR11044565 | MDR-TB | lineage2.2.1 | None | ERR4797878 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800682 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799568 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831011 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800558 | Pre-XDR-TB | lineage2.2.1 | in | SRR28351165 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351573 | XDR-TB | lineage2.2.1 | None | SRR28351489 | MDR-TB | lineage2.2.1 | None | SRR28351547 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796633 | Pre-XDR-TB | lineage2.2.1 | in | ERR11068484 | MDR-TB | lineage2.2.1 | None | ERR4799807 | MDR-TB | lineage2.2.1 | in | ERR4797426 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800672 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830917 | Pre-XDR-TB | lineage2.2.1 | np | ERR4799132 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798963 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798304 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830912 | Pre-XDR-TB | lineage2.2.1 | np | ERR4799815 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797051 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796404 | XDR-TB | lineage2.2.1 | in | ERR4800477 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796898 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797329 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830974 | Pre-XDR-TB | lineage2.2.1 | np | ERR4800546 | Pre-XDR-TB | lineage2.2.1 | in | ERR4818464 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4797968 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796839 | Pre-XDR-TB | lineage2.2.1 | in | ERR2516198 | Pre-XDR-TB | lineage2.2.1 | be | ERR4830937 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830971 | Pre-XDR-TB | lineage2.2.1 | np | ERR4798116 | MDR-TB | lineage2.2.1 | in | ERR4799675 | Pre-XDR-TB | lineage2.2.1 | in |
|---|
