Rv3854c - c.-1080_576del


Drug resistance types
0 Sensitive 0 RR-TB 3 HR-TB 47 MDR-TB 281 Pre-XDR-TB 18 XDR-TB 1 Other
lineage Counts
lineage Count
lineage2.2.1 349
lineage2.2.1;lineage3 1
spoligotype Counts
spoligotype Count
None 350
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4798900 MDR-TB lineage2.2.1 in
ERR4799556 MDR-TB lineage2.2.1 in
ERR4797596 Pre-XDR-TB lineage2.2.1 in
ERR4800632 Pre-XDR-TB lineage2.2.1 None
ERR4830951 Pre-XDR-TB lineage2.2.1 np
SRR28351165 Pre-XDR-TB lineage2.2.1 None
ERR4830969 Pre-XDR-TB lineage2.2.1 np
ERR4830976 Pre-XDR-TB lineage2.2.1 np
ERR4830917 Pre-XDR-TB lineage2.2.1 np
SRR8237317 MDR-TB lineage2.2.1 np
ERR4798585 Pre-XDR-TB lineage2.2.1 in
ERR4796879 MDR-TB lineage2.2.1 in
ERR4797516 Pre-XDR-TB lineage2.2.1 in
ERR4798621 Pre-XDR-TB lineage2.2.1 in
ERR4799132 Pre-XDR-TB lineage2.2.1 in
ERR4796711 Pre-XDR-TB lineage2.2.1 in
ERR4800213 Pre-XDR-TB lineage2.2.1 in
ERR4800513 Pre-XDR-TB lineage2.2.1 None
ERR4830912 Pre-XDR-TB lineage2.2.1 np
ERR4800560 Pre-XDR-TB lineage2.2.1 in
ERR4797811 Pre-XDR-TB lineage2.2.1 in
ERR4830660 Pre-XDR-TB lineage2.2.1 np
ERR4830903 Pre-XDR-TB lineage2.2.1 np
ERR4830937 Pre-XDR-TB lineage2.2.1 np
ERR4796839 Pre-XDR-TB lineage2.2.1 in
ERR4798663 Pre-XDR-TB lineage2.2.1 in
ERR4830925 Pre-XDR-TB lineage2.2.1 np
ERR4830935 Pre-XDR-TB lineage2.2.1 np
ERR4831009 Pre-XDR-TB lineage2.2.1 np
SRR16058382 MDR-TB lineage2.2.1 None
ERR4798483 Pre-XDR-TB lineage2.2.1 in
ERR4799217 Pre-XDR-TB lineage2.2.1 in
ERR4830942 Pre-XDR-TB lineage2.2.1 np
ERR4799697 Pre-XDR-TB lineage2.2.1 in
ERR4798814 MDR-TB lineage2.2.1 in
ERR4796706 Pre-XDR-TB lineage2.2.1 in
ERR4830939 Pre-XDR-TB lineage2.2.1 np
ERR4797363 XDR-TB lineage2.2.1 in
SRR1163462 Pre-XDR-TB lineage2.2.1 None
SRR18593229 Pre-XDR-TB lineage2.2.1 None
ERR13261247 Pre-XDR-TB lineage2.2.1 None
ERR4798948 Pre-XDR-TB lineage2.2.1 in
ERR13266910 Pre-XDR-TB lineage2.2.1 None
ERR13261383 Pre-XDR-TB lineage2.2.1 None
ERR13261530 Pre-XDR-TB lineage2.2.1 None
ERR4799675 Pre-XDR-TB lineage2.2.1 in
SRR1165376 Pre-XDR-TB lineage2.2.1 None
ERR4830928 Pre-XDR-TB lineage2.2.1 np
ERR4797340 MDR-TB lineage2.2.1 in
ERR4797968 Pre-XDR-TB lineage2.2.1 in
ERR13266051 Pre-XDR-TB lineage2.2.1 None
ERR4796585 Pre-XDR-TB lineage2.2.1 in
ERR4796808 Pre-XDR-TB lineage2.2.1 in
ERR13266601 Pre-XDR-TB lineage2.2.1 None
ERR4831027 Pre-XDR-TB lineage2.2.1 np
ERR13267029 Pre-XDR-TB lineage2.2.1 None
ERR4796898 Pre-XDR-TB lineage2.2.1 in
ERR4798133 Pre-XDR-TB lineage2.2.1 in
ERR13261240 Pre-XDR-TB lineage2.2.1 None
ERR4799498 Pre-XDR-TB lineage2.2.1 in
SRR28858522 Pre-XDR-TB lineage2.2.1 None
ERR13261306 MDR-TB lineage2.2.1 None
ERR4798260 Pre-XDR-TB lineage2.2.1 in
ERR4796602 Pre-XDR-TB lineage2.2.1 in
ERR13267022 Pre-XDR-TB lineage2.2.1 None
ERR13261158 Pre-XDR-TB lineage2.2.1 None
ERR13261145 Pre-XDR-TB lineage2.2.1 None
ERR13262096 Pre-XDR-TB lineage2.2.1 None
ERR4798693 Pre-XDR-TB lineage2.2.1 in
ERR4797751 Pre-XDR-TB lineage2.2.1 in
ERR13261218 Pre-XDR-TB lineage2.2.1 None
SRR28046122 Pre-XDR-TB lineage2.2.1 None
ERR13267132 Pre-XDR-TB lineage2.2.1 None
ERR13266648 Pre-XDR-TB lineage2.2.1 None
ERR4799616 Pre-XDR-TB lineage2.2.1 in
ERR13290870 Pre-XDR-TB lineage2.2.1 None
ERR13262124 Pre-XDR-TB lineage2.2.1 None
ERR4796936 Pre-XDR-TB lineage2.2.1 in
ERR4797082 Pre-XDR-TB lineage2.2.1 in
ERR4796377 Pre-XDR-TB lineage2.2.1 in
ERR2516198 Pre-XDR-TB lineage2.2.1 be
ERR13266419 Pre-XDR-TB lineage2.2.1 None
ERR4796672 Pre-XDR-TB lineage2.2.1 in
ERR4831081 MDR-TB lineage2.2.1 np
ERR4796522 Pre-XDR-TB lineage2.2.1 in
ERR4797922 Pre-XDR-TB lineage2.2.1 in
ERR4797268 Pre-XDR-TB lineage2.2.1 in
ERR4796922 Pre-XDR-TB lineage2.2.1 in
SRR7070032 Pre-XDR-TB lineage2.2.1 None
SRR29230723 MDR-TB lineage2.2.1 None
ERR13266426 Pre-XDR-TB lineage2.2.1 None
ERR4799877 Pre-XDR-TB lineage2.2.1 in
ERR13266836 Pre-XDR-TB lineage2.2.1 None
SRR22424794 Pre-XDR-TB lineage2.2.1 None
ERR13290586 Pre-XDR-TB lineage2.2.1 None
ERR4800166 Pre-XDR-TB lineage2.2.1 None
ERR4830924 Pre-XDR-TB lineage2.2.1 np
SRR18149468 Pre-XDR-TB lineage2.2.1 None
SRR7068977 Pre-XDR-TB lineage2.2.1 None
ERR13266039 Pre-XDR-TB lineage2.2.1 None
ERR4796636 Pre-XDR-TB lineage2.2.1 in
ERR13266560 XDR-TB lineage2.2.1 None
ERR2517038 MDR-TB lineage2.2.1 gb
ERR13266861 Pre-XDR-TB lineage2.2.1 None
ERR4796579 Pre-XDR-TB lineage2.2.1 in
ERR4796763 Pre-XDR-TB lineage2.2.1 in
ERR4798689 Pre-XDR-TB lineage2.2.1 in
ERR4799355 Pre-XDR-TB lineage2.2.1 in
ERR4800067 Pre-XDR-TB lineage2.2.1 in
ERR4800439 Pre-XDR-TB lineage2.2.1 in
ERR4797856 XDR-TB lineage2.2.1 in
SAMN02414964 Pre-XDR-TB lineage2.2.1 se
ERR13266574 Pre-XDR-TB lineage2.2.1 None
ERR4796415 Pre-XDR-TB lineage2.2.1 in
ERR13266661 XDR-TB lineage2.2.1 None
ERR4798698 MDR-TB lineage2.2.1 in
ERR4830997 Pre-XDR-TB lineage2.2.1 np
ERR13267116 Pre-XDR-TB lineage2.2.1 None
ERR4797489 MDR-TB lineage2.2.1 in
ERR4798202 Pre-XDR-TB lineage2.2.1 in
ERR13261077 Pre-XDR-TB lineage2.2.1 None
SRR1167138 Pre-XDR-TB lineage2.2.1 None
ERR13262105 Pre-XDR-TB lineage2.2.1 None
ERR4798174 Pre-XDR-TB lineage2.2.1 in
ERR4799341 Pre-XDR-TB lineage2.2.1 in
SRR8380932 MDR-TB lineage2.2.1 in
ERR4797162 Pre-XDR-TB lineage2.2.1 in
ERR13266724 Pre-XDR-TB lineage2.2.1 None
ERR2517090 MDR-TB lineage2.2.1 gb
ERR4797992 Pre-XDR-TB lineage2.2.1 in
ERR2516770 MDR-TB lineage2.2.1 gb
ERR4800425 Pre-XDR-TB lineage2.2.1 in
ERR4800682 Pre-XDR-TB lineage2.2.1 None
SRR29231198 Pre-XDR-TB lineage2.2.1 None
ERR13261374 Pre-XDR-TB lineage2.2.1 None
ERR4799316 Pre-XDR-TB lineage2.2.1 in
ERR4797115 Pre-XDR-TB lineage2.2.1 in
ERR4799690 XDR-TB lineage2.2.1 in
ERR4831011 Pre-XDR-TB lineage2.2.1 np
SRR28351435 Pre-XDR-TB lineage2.2.1 None
SRR28351583 Pre-XDR-TB lineage2.2.1 None
SRR28046140 Pre-XDR-TB lineage2.2.1 None
SRR28351193 Pre-XDR-TB lineage2.2.1 None
SRR28351271 Pre-XDR-TB lineage2.2.1 None
SRR28351489 MDR-TB lineage2.2.1 None
SRR28351547 Pre-XDR-TB lineage2.2.1 None
ERR4796723 MDR-TB lineage2.2.1 in
ERR4798892 Pre-XDR-TB lineage2.2.1 in
ERR4796917 Pre-XDR-TB lineage2.2.1 in
ERR4797044 Pre-XDR-TB lineage2.2.1 in
ERR4798307 Pre-XDR-TB lineage2.2.1 in
ERR4798563 Pre-XDR-TB lineage2.2.1 in
ERR4799063 MDR-TB lineage2.2.1 in
ERR4800672 Pre-XDR-TB lineage2.2.1 None
ERR4796633 Pre-XDR-TB lineage2.2.1 in
ERR4799468 Pre-XDR-TB lineage2.2.1 in
ERR4799806 Pre-XDR-TB lineage2.2.1 in
ERR4800402 Pre-XDR-TB lineage2.2.1 in
ERR4797555 Pre-XDR-TB lineage2.2.1 in
ERR4797323 MDR-TB lineage2.2.1 in
ERR7162984 Pre-XDR-TB lineage2.2.1 None
ERR4800546 Pre-XDR-TB lineage2.2.1 in
ERR4798304 Pre-XDR-TB lineage2.2.1 in
ERR4797113 Pre-XDR-TB lineage2.2.1 in
ERR4797824 Pre-XDR-TB lineage2.2.1 in
ERR4799409 Pre-XDR-TB lineage2.2.1 in
ERR4799564 MDR-TB lineage2.2.1 in
SRR22175206 Pre-XDR-TB lineage2.2.1 None
ERR4800477 Pre-XDR-TB lineage2.2.1 in
ERR4797399 Pre-XDR-TB lineage2.2.1 in
ERR4799860 MDR-TB lineage2.2.1 in
SRR22424786 MDR-TB lineage2.2.1 None
ERR11044474 Pre-XDR-TB lineage2.2.1 None
ERR13266936 Pre-XDR-TB lineage2.2.1 None
ERR13267113 Pre-XDR-TB lineage2.2.1 None
ERR4798082 MDR-TB lineage2.2.1 in
ERR4830929 Pre-XDR-TB lineage2.2.1 np
ERR4830938 Pre-XDR-TB lineage2.2.1 np
ERR4830995 Pre-XDR-TB lineage2.2.1 np
ERR13291803 Pre-XDR-TB lineage2.2.1 None
ERR4796371 Pre-XDR-TB lineage2.2.1 in
ERR4796543 MDR-TB lineage2.2.1 in
ERR4798116 MDR-TB lineage2.2.1 in
ERR4798930 Pre-XDR-TB lineage2.2.1 in
ERR4798780 Pre-XDR-TB lineage2.2.1 in
ERR2513950 Pre-XDR-TB lineage2.2.1 gb
ERR13266930 XDR-TB lineage2.2.1 None
ERR4830901 Pre-XDR-TB lineage2.2.1 np
ERR4799523 XDR-TB lineage2.2.1 in
ERR4799608 Pre-XDR-TB lineage2.2.1 in
ERR4799632 Pre-XDR-TB lineage2.2.1 in
ERR13261986 HR-TB lineage2.2.1 None
SRR29016755 Pre-XDR-TB lineage2.2.1 None
ERR4798950 Pre-XDR-TB lineage2.2.1 in
ERR4800381 XDR-TB lineage2.2.1 in
SRR1163483 Pre-XDR-TB lineage2.2.1 None
ERR13266595 Pre-XDR-TB lineage2.2.1 None
ERR13260963 Pre-XDR-TB lineage2.2.1 None
ERR13267023 MDR-TB lineage2.2.1 None
ERR13266962 MDR-TB lineage2.2.1 None
ERR13290588 Pre-XDR-TB lineage2.2.1 None
ERR13261281 MDR-TB lineage2.2.1 None
ERR13290587 Pre-XDR-TB lineage2.2.1 None
ERR13266887 Pre-XDR-TB lineage2.2.1 None
ERR4798665 Pre-XDR-TB lineage2.2.1 in
ERR4798902 Pre-XDR-TB lineage2.2.1 in
ERR13267111 Pre-XDR-TB lineage2.2.1 None
ERR4799255 Pre-XDR-TB lineage2.2.1 in
SRR22424812 MDR-TB lineage2.2.1 None
ERR4830985 Pre-XDR-TB lineage2.2.1 np
ERR4797426 Pre-XDR-TB lineage2.2.1 in
ERR4800144 Pre-XDR-TB lineage2.2.1 None
ERR4797563 Pre-XDR-TB lineage2.2.1 in
ERR4830998 Pre-XDR-TB lineage2.2.1 np
ERR4796686 MDR-TB lineage2.2.1 None
ERR13267066 Pre-XDR-TB lineage2.2.1 None
ERR13266879 Pre-XDR-TB lineage2.2.1 None
ERR13262091 Pre-XDR-TB lineage2.2.1 None
ERR4798090 Pre-XDR-TB lineage2.2.1 in
ERR4799971 Pre-XDR-TB lineage2.2.1 in
ERR4798402 Pre-XDR-TB lineage2.2.1 None
ERR4799027 HR-TB lineage2.2.1 in
ERR4800558 Pre-XDR-TB lineage2.2.1 in
ERR13266084 Pre-XDR-TB lineage2.2.1 None
ERR4798677 XDR-TB lineage2.2.1 in
ERR4797266 Pre-XDR-TB lineage2.2.1 in
ERR4831028 Pre-XDR-TB lineage2.2.1 np
SRR22175253 Pre-XDR-TB lineage2.2.1 None
SRR22424798 Pre-XDR-TB lineage2.2.1 None
ERR4797208 MDR-TB lineage2.2.1 in
ERR13261974 Pre-XDR-TB lineage2.2.1 None
SRR29356683 Pre-XDR-TB lineage2.2.1 None
ERR13261278 MDR-TB lineage2.2.1 None
ERR4796513 Pre-XDR-TB lineage2.2.1 in
ERR13266444 Pre-XDR-TB lineage2.2.1 None
ERR4799077 Pre-XDR-TB lineage2.2.1 in
ERR13261355 Pre-XDR-TB lineage2.2.1 None
ERR13262064 Pre-XDR-TB lineage2.2.1 None
ERR4797525 Pre-XDR-TB lineage2.2.1 in
ERR4830918 Pre-XDR-TB lineage2.2.1 np
ERR13267121 Pre-XDR-TB lineage2.2.1 None
ERR4830987 Pre-XDR-TB lineage2.2.1 np
ERR13266947 XDR-TB lineage2.2.1 None
ERR4796397 Pre-XDR-TB lineage2.2.1 in
ERR4800653 Pre-XDR-TB lineage2.2.1 None
ERR13261546 Pre-XDR-TB lineage2.2.1 None
ERR13266538 Pre-XDR-TB lineage2.2.1 None
ERR4797564 Pre-XDR-TB lineage2.2.1 in
ERR4798037 Pre-XDR-TB lineage2.2.1 in
ERR4800248 Pre-XDR-TB lineage2.2.1 in
ERR4799701 MDR-TB lineage2.2.1 in
ERR4796404 XDR-TB lineage2.2.1 in
ERR4797288 Pre-XDR-TB lineage2.2.1 in
ERR4799159 Pre-XDR-TB lineage2.2.1 in
ERR4800286 Pre-XDR-TB lineage2.2.1 None
ERR4830914 Pre-XDR-TB lineage2.2.1 np
ERR13267026 Pre-XDR-TB lineage2.2.1 None
ERR13262165 XDR-TB lineage2.2.1 None
ERR4830991 Pre-XDR-TB lineage2.2.1 np
ERR4800335 Pre-XDR-TB lineage2.2.1 in
ERR4797459 MDR-TB lineage2.2.1 in
ERR13266810 Pre-XDR-TB lineage2.2.1 None
ERR4799026 Pre-XDR-TB lineage2.2.1 in
ERR4798894 Pre-XDR-TB lineage2.2.1 in
ERR13261341 Pre-XDR-TB lineage2.2.1 None
SRR29231481 Pre-XDR-TB lineage2.2.1 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR13266602 Pre-XDR-TB lineage2.2.1 None
ERR4797329 Pre-XDR-TB lineage2.2.1 in
ERR4797428 MDR-TB lineage2.2.1 in
ERR4814280 Pre-XDR-TB lineage2.2.1 gb
ERR4818464 Pre-XDR-TB lineage2.2.1 gb
ERR4799035 Pre-XDR-TB lineage2.2.1 in
ERR4800093 Other lineage2.2.1 None
ERR13261154 Pre-XDR-TB lineage2.2.1 None
ERR13266631 Pre-XDR-TB lineage2.2.1 None
ERR13266783 Pre-XDR-TB lineage2.2.1 None
ERR13276145 Pre-XDR-TB lineage2.2.1 None
ERR13290589 Pre-XDR-TB lineage2.2.1 None
ERR11068484 MDR-TB lineage2.2.1 None
ERR4796533 MDR-TB lineage2.2.1 in
ERR4830915 Pre-XDR-TB lineage2.2.1 np
ERR4798787 Pre-XDR-TB lineage2.2.1 in
ERR13261966 Pre-XDR-TB lineage2.2.1 None
ERR13290856 Pre-XDR-TB lineage2.2.1 None
ERR13267005 XDR-TB lineage2.2.1 None
ERR13260980 Pre-XDR-TB lineage2.2.1 None
ERR13266842 Pre-XDR-TB lineage2.2.1 None
ERR4800465 MDR-TB lineage2.2.1 in
ERR4799991 Pre-XDR-TB lineage2.2.1 in
ERR4797051 Pre-XDR-TB lineage2.2.1 in
ERR4797878 Pre-XDR-TB lineage2.2.1 in
ERR4797754 Pre-XDR-TB lineage2.2.1 in
ERR4797523 Pre-XDR-TB lineage2.2.1 in
SRR28351326 Pre-XDR-TB lineage2.2.1 None
SRR28351425 Pre-XDR-TB lineage2.2.1 None
SRR28045539 Pre-XDR-TB lineage2.2.1 None
ERR4830971 Pre-XDR-TB lineage2.2.1 np
ERR4831010 Pre-XDR-TB lineage2.2.1 np
ERR4830657 Pre-XDR-TB lineage2.2.1 np
ERR4800347 XDR-TB lineage2.2.1 None
ERR4799815 Pre-XDR-TB lineage2.2.1 in
ERR9125282 MDR-TB lineage2.2.1 None
SRR22175242 Pre-XDR-TB lineage2.2.1 None
ERR13261480 Pre-XDR-TB lineage2.2.1 None
ERR4800000 Pre-XDR-TB lineage2.2.1 in
ERR13262163 XDR-TB lineage2.2.1 None
ERR4818630 Pre-XDR-TB lineage2.2.1 None
ERR4831249 Pre-XDR-TB lineage2.2.1 None
ERR13261151 Pre-XDR-TB lineage2.2.1 None
ERR4553937 Pre-XDR-TB lineage2.2.1 None
ERR4796758 Pre-XDR-TB lineage2.2.1 in
ERR4796940 Pre-XDR-TB lineage2.2.1 in
ERR13266790 Pre-XDR-TB lineage2.2.1 None
ERR4799979 HR-TB lineage2.2.1 in
ERR11044565 MDR-TB lineage2.2.1 None
ERR4830936 Pre-XDR-TB lineage2.2.1 np
SRR28351573 XDR-TB lineage2.2.1 None
ERR7162981 Pre-XDR-TB lineage2.2.1 None
ERR13266739 Pre-XDR-TB lineage2.2.1 None
ERR4798775 Pre-XDR-TB lineage2.2.1 in
ERR4798963 Pre-XDR-TB lineage2.2.1 in
ERR4799807 MDR-TB lineage2.2.1 in
ERR4799419 Pre-XDR-TB lineage2.2.1 in
ERR4800304 Pre-XDR-TB lineage2.2.1 in
ERR4796891 Pre-XDR-TB lineage2.2.1 in
ERR4799398 Pre-XDR-TB lineage2.2.1 in
ERR4800512 Pre-XDR-TB lineage2.2.1 in
ERR4830933 Pre-XDR-TB lineage2.2.1 np
SRR22424821 Pre-XDR-TB lineage2.2.1 None
ERR4796441 Pre-XDR-TB lineage2.2.1 in
ERR4799724 MDR-TB lineage2.2.1 in
ERR4800597 Pre-XDR-TB lineage2.2.1 None
ERR4830919 Pre-XDR-TB lineage2.2.1 np
ERR4796960 MDR-TB lineage2.2.1;lineage3 in
ERR4797132 Pre-XDR-TB lineage2.2.1 in
ERR4797722 Pre-XDR-TB lineage2.2.1 in
ERR4798498 MDR-TB lineage2.2.1 in
ERR4799568 Pre-XDR-TB lineage2.2.1 in
ERR4816745 Pre-XDR-TB lineage2.2.1 None
ERR4797808 XDR-TB lineage2.2.1 in
ERR4798550 Pre-XDR-TB lineage2.2.1 in
SRR28045664 MDR-TB lineage2.2.1 None
ERR4830905 Pre-XDR-TB lineage2.2.1 np
ERR4830974 Pre-XDR-TB lineage2.2.1 np
SRR16100248 Pre-XDR-TB lineage2.2.1 None
ERR13261528 Pre-XDR-TB lineage2.2.1 None
ERR13267115 Pre-XDR-TB lineage2.2.1 None
SRR22175225 XDR-TB lineage2.2.1 None
ERR4799415 Pre-XDR-TB lineage2.2.1 in