Rv3854c - c.-1080_576del


Drug resistance types
0 Sensitive 0 RR-TB 2 HR-TB 41 MDR-TB 208 Pre-XDR-TB 11 XDR-TB 1 Other
lineage Counts
lineage Count
lineage2.2.1 262
lineage2.2.1;lineage3 1
spoligotype Counts
spoligotype Count
None 263
Geographic prevalence
Country level data for this variant is available for 206 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4799063 MDR-TB lineage2.2.1 in
ERR4830935 Pre-XDR-TB lineage2.2.1 np
ERR4796377 Pre-XDR-TB lineage2.2.1 in
ERR4796960 MDR-TB lineage2.2.1;lineage3 in
ERR4796672 Pre-XDR-TB lineage2.2.1 in
ERR4799806 Pre-XDR-TB lineage2.2.1 in
ERR4796808 Pre-XDR-TB lineage2.2.1 in
ERR4830995 Pre-XDR-TB lineage2.2.1 np
ERR4796397 Pre-XDR-TB lineage2.2.1 in
ERR4798037 Pre-XDR-TB lineage2.2.1 in
ERR4797340 MDR-TB lineage2.2.1 in
SRR7070032 Pre-XDR-TB lineage2.2.1 None
ERR4799701 MDR-TB lineage2.2.1 in
ERR7162984 Pre-XDR-TB lineage2.2.1 None
ERR4831081 MDR-TB lineage2.2.1 np
ERR4818630 Pre-XDR-TB lineage2.2.1 None
ERR4797459 MDR-TB lineage2.2.1 in
SRR22424794 Pre-XDR-TB lineage2.2.1 None
ERR4800286 Pre-XDR-TB lineage2.2.1 None
ERR4800000 Pre-XDR-TB lineage2.2.1 in
ERR4797596 Pre-XDR-TB lineage2.2.1 in
ERR4799026 Pre-XDR-TB lineage2.2.1 in
ERR4798900 MDR-TB lineage2.2.1 in
ERR4796636 Pre-XDR-TB lineage2.2.1 in
ERR4798133 Pre-XDR-TB lineage2.2.1 in
ERR4797428 MDR-TB lineage2.2.1 in
ERR4799355 Pre-XDR-TB lineage2.2.1 in
ERR4799159 Pre-XDR-TB lineage2.2.1 in
ERR4797082 Pre-XDR-TB lineage2.2.1 in
ERR4798307 Pre-XDR-TB lineage2.2.1 in
ERR4797489 MDR-TB lineage2.2.1 in
ERR4798902 Pre-XDR-TB lineage2.2.1 in
ERR4796758 Pre-XDR-TB lineage2.2.1 in
ERR4799077 Pre-XDR-TB lineage2.2.1 in
ERR4797044 Pre-XDR-TB lineage2.2.1 in
SRR8380932 MDR-TB lineage2.2.1 in
ERR4797162 Pre-XDR-TB lineage2.2.1 in
ERR4799608 Pre-XDR-TB lineage2.2.1 in
ERR4830903 Pre-XDR-TB lineage2.2.1 np
ERR4797992 Pre-XDR-TB lineage2.2.1 in
ERR2516770 MDR-TB lineage2.2.1 gb
ERR4799498 Pre-XDR-TB lineage2.2.1 in
ERR4799523 XDR-TB lineage2.2.1 in
ERR4797754 Pre-XDR-TB lineage2.2.1 in
ERR11044565 MDR-TB lineage2.2.1 None
ERR4830987 Pre-XDR-TB lineage2.2.1 np
ERR4799690 XDR-TB lineage2.2.1 in
ERR4800682 Pre-XDR-TB lineage2.2.1 None
ERR4799568 Pre-XDR-TB lineage2.2.1 in
SRR28351326 Pre-XDR-TB lineage2.2.1 None
SRR28045664 MDR-TB lineage2.2.1 None
SRR28351573 XDR-TB lineage2.2.1 None
SRR28351583 Pre-XDR-TB lineage2.2.1 None
SRR28351489 MDR-TB lineage2.2.1 None
ERR4797525 Pre-XDR-TB lineage2.2.1 in
ERR4799877 Pre-XDR-TB lineage2.2.1 in
ERR4796723 MDR-TB lineage2.2.1 in
ERR4799556 MDR-TB lineage2.2.1 in
ERR4799419 Pre-XDR-TB lineage2.2.1 in
ERR4797555 Pre-XDR-TB lineage2.2.1 in
ERR4796763 Pre-XDR-TB lineage2.2.1 in
ERR4830917 Pre-XDR-TB lineage2.2.1 np
ERR4799132 Pre-XDR-TB lineage2.2.1 in
ERR4553937 Pre-XDR-TB lineage2.2.1 None
ERR4830912 Pre-XDR-TB lineage2.2.1 np
ERR4800560 Pre-XDR-TB lineage2.2.1 in
ERR4797115 Pre-XDR-TB lineage2.2.1 in
ERR4830925 Pre-XDR-TB lineage2.2.1 np
ERR4797051 Pre-XDR-TB lineage2.2.1 in
ERR4797329 Pre-XDR-TB lineage2.2.1 in
ERR4799697 Pre-XDR-TB lineage2.2.1 in
SRR22175206 Pre-XDR-TB lineage2.2.1 None
ERR4796936 Pre-XDR-TB lineage2.2.1 in
ERR4797516 Pre-XDR-TB lineage2.2.1 in
ERR4830937 Pre-XDR-TB lineage2.2.1 np
ERR4799724 MDR-TB lineage2.2.1 in
ERR4816745 Pre-XDR-TB lineage2.2.1 None
ERR4798550 Pre-XDR-TB lineage2.2.1 in
ERR4797824 Pre-XDR-TB lineage2.2.1 in
ERR4796513 Pre-XDR-TB lineage2.2.1 in
ERR4800632 Pre-XDR-TB lineage2.2.1 None
SRR18149468 Pre-XDR-TB lineage2.2.1 None
ERR4831027 Pre-XDR-TB lineage2.2.1 np
ERR2517090 MDR-TB lineage2.2.1 gb
ERR4797563 Pre-XDR-TB lineage2.2.1 in
ERR4799468 Pre-XDR-TB lineage2.2.1 in
ERR4798260 Pre-XDR-TB lineage2.2.1 in
ERR4830998 Pre-XDR-TB lineage2.2.1 np
ERR4799632 Pre-XDR-TB lineage2.2.1 in
ERR11044474 Pre-XDR-TB lineage2.2.1 None
ERR4798693 Pre-XDR-TB lineage2.2.1 in
ERR4799027 HR-TB lineage2.2.1 in
ERR4830997 Pre-XDR-TB lineage2.2.1 np
ERR4796891 Pre-XDR-TB lineage2.2.1 in
ERR4799616 Pre-XDR-TB lineage2.2.1 in
ERR4800213 Pre-XDR-TB lineage2.2.1 in
ERR4800597 Pre-XDR-TB lineage2.2.1 None
SRR16058382 MDR-TB lineage2.2.1 None
ERR4814280 Pre-XDR-TB lineage2.2.1 gb
ERR4830976 Pre-XDR-TB lineage2.2.1 np
ERR4830919 Pre-XDR-TB lineage2.2.1 np
ERR4797811 Pre-XDR-TB lineage2.2.1 in
ERR4797922 Pre-XDR-TB lineage2.2.1 in
ERR4796441 Pre-XDR-TB lineage2.2.1 in
ERR4800653 Pre-XDR-TB lineage2.2.1 None
ERR4831009 Pre-XDR-TB lineage2.2.1 np
ERR4796922 Pre-XDR-TB lineage2.2.1 in
ERR4798775 Pre-XDR-TB lineage2.2.1 in
ERR4830991 Pre-XDR-TB lineage2.2.1 np
ERR4800166 Pre-XDR-TB lineage2.2.1 None
SRR7068977 Pre-XDR-TB lineage2.2.1 None
ERR4830933 Pre-XDR-TB lineage2.2.1 np
ERR4798950 Pre-XDR-TB lineage2.2.1 in
SRR1167138 Pre-XDR-TB lineage2.2.1 None
ERR4799409 Pre-XDR-TB lineage2.2.1 in
ERR4800439 Pre-XDR-TB lineage2.2.1 in
ERR4799035 Pre-XDR-TB lineage2.2.1 in
SAMN02414964 Pre-XDR-TB lineage2.2.1 se
ERR4796415 Pre-XDR-TB lineage2.2.1 in
ERR4798202 Pre-XDR-TB lineage2.2.1 in
ERR4800093 Other lineage2.2.1 None
ERR4798174 Pre-XDR-TB lineage2.2.1 in
ERR4799341 Pre-XDR-TB lineage2.2.1 in
ERR4798689 Pre-XDR-TB lineage2.2.1 in
ERR4797878 Pre-XDR-TB lineage2.2.1 in
ERR4797523 Pre-XDR-TB lineage2.2.1 in
ERR4800558 Pre-XDR-TB lineage2.2.1 in
SRR28046122 Pre-XDR-TB lineage2.2.1 None
SRR28351435 Pre-XDR-TB lineage2.2.1 None
SRR28046140 Pre-XDR-TB lineage2.2.1 None
SRR28351193 Pre-XDR-TB lineage2.2.1 None
SRR28351271 Pre-XDR-TB lineage2.2.1 None
ERR4796633 Pre-XDR-TB lineage2.2.1 in
ERR11068484 MDR-TB lineage2.2.1 None
ERR4799807 MDR-TB lineage2.2.1 in
ERR4797426 Pre-XDR-TB lineage2.2.1 in
ERR4798493 MDR-TB lineage2.2.1 None
ERR4797323 MDR-TB lineage2.2.1 in
ERR4800672 Pre-XDR-TB lineage2.2.1 None
ERR4798585 Pre-XDR-TB lineage2.2.1 in
ERR4797266 Pre-XDR-TB lineage2.2.1 in
ERR4800477 Pre-XDR-TB lineage2.2.1 in
ERR4796898 Pre-XDR-TB lineage2.2.1 in
ERR4830657 Pre-XDR-TB lineage2.2.1 np
ERR4831028 Pre-XDR-TB lineage2.2.1 np
ERR4830974 Pre-XDR-TB lineage2.2.1 np
ERR4797399 Pre-XDR-TB lineage2.2.1 in
ERR4800546 Pre-XDR-TB lineage2.2.1 in
SRR22175225 XDR-TB lineage2.2.1 None
ERR4830929 Pre-XDR-TB lineage2.2.1 np
ERR4831249 Pre-XDR-TB lineage2.2.1 None
ERR4796371 Pre-XDR-TB lineage2.2.1 in
SRR1163462 Pre-XDR-TB lineage2.2.1 None
ERR4798948 Pre-XDR-TB lineage2.2.1 in
ERR4798930 Pre-XDR-TB lineage2.2.1 in
ERR4830901 Pre-XDR-TB lineage2.2.1 np
ERR4796839 Pre-XDR-TB lineage2.2.1 in
ERR4798116 MDR-TB lineage2.2.1 in
ERR4799675 Pre-XDR-TB lineage2.2.1 in
SRR1165376 Pre-XDR-TB lineage2.2.1 None
ERR4830969 Pre-XDR-TB lineage2.2.1 np
ERR4800381 XDR-TB lineage2.2.1 in
ERR4798498 MDR-TB lineage2.2.1 in
ERR7162981 Pre-XDR-TB lineage2.2.1 None
ERR4796585 Pre-XDR-TB lineage2.2.1 in
SRR8237317 MDR-TB lineage2.2.1 np
ERR4799255 Pre-XDR-TB lineage2.2.1 in
SRR22175253 Pre-XDR-TB lineage2.2.1 None
ERR4796602 Pre-XDR-TB lineage2.2.1 in
ERR4799398 Pre-XDR-TB lineage2.2.1 in
ERR4797751 Pre-XDR-TB lineage2.2.1 in
ERR4799971 Pre-XDR-TB lineage2.2.1 in
SRR18593229 Pre-XDR-TB lineage2.2.1 None
ERR4798677 XDR-TB lineage2.2.1 in
ERR2517038 MDR-TB lineage2.2.1 gb
ERR4798892 Pre-XDR-TB lineage2.2.1 in
SRR22424798 Pre-XDR-TB lineage2.2.1 None
SRR22175242 Pre-XDR-TB lineage2.2.1 None
ERR4830985 Pre-XDR-TB lineage2.2.1 np
ERR4800304 Pre-XDR-TB lineage2.2.1 in
ERR4798563 Pre-XDR-TB lineage2.2.1 in
ERR4796522 Pre-XDR-TB lineage2.2.1 in
ERR4797268 Pre-XDR-TB lineage2.2.1 in
ERR4830928 Pre-XDR-TB lineage2.2.1 np
ERR4797564 Pre-XDR-TB lineage2.2.1 in
ERR4800248 Pre-XDR-TB lineage2.2.1 in
ERR4831010 Pre-XDR-TB lineage2.2.1 np
ERR4797288 Pre-XDR-TB lineage2.2.1 in
ERR4830914 Pre-XDR-TB lineage2.2.1 np
ERR4800513 Pre-XDR-TB lineage2.2.1 None
ERR4800335 Pre-XDR-TB lineage2.2.1 in
ERR4830924 Pre-XDR-TB lineage2.2.1 np
ERR4830951 Pre-XDR-TB lineage2.2.1 np
SRR16100248 Pre-XDR-TB lineage2.2.1 None
ERR4798894 Pre-XDR-TB lineage2.2.1 in
ERR4830660 Pre-XDR-TB lineage2.2.1 np
ERR4830938 Pre-XDR-TB lineage2.2.1 np
ERR4797856 XDR-TB lineage2.2.1 in
ERR4798698 MDR-TB lineage2.2.1 in
ERR4796879 MDR-TB lineage2.2.1 in
ERR4796533 MDR-TB lineage2.2.1 in
ERR4830915 Pre-XDR-TB lineage2.2.1 np
ERR4798787 Pre-XDR-TB lineage2.2.1 in
ERR9125282 MDR-TB lineage2.2.1 None
ERR4799564 MDR-TB lineage2.2.1 in
ERR4800402 Pre-XDR-TB lineage2.2.1 in
ERR4798663 Pre-XDR-TB lineage2.2.1 in
ERR4800425 Pre-XDR-TB lineage2.2.1 in
ERR4796917 Pre-XDR-TB lineage2.2.1 in
ERR4800347 XDR-TB lineage2.2.1 None
ERR4799316 Pre-XDR-TB lineage2.2.1 in
SRR1163483 Pre-XDR-TB lineage2.2.1 None
SRR22424821 Pre-XDR-TB lineage2.2.1 None
ERR4800465 MDR-TB lineage2.2.1 in
ERR4799991 Pre-XDR-TB lineage2.2.1 in
ERR4831011 Pre-XDR-TB lineage2.2.1 np
SRR28351165 Pre-XDR-TB lineage2.2.1 None
SRR28351425 Pre-XDR-TB lineage2.2.1 None
SRR28045539 Pre-XDR-TB lineage2.2.1 None
SRR28351547 Pre-XDR-TB lineage2.2.1 None
ERR4799415 Pre-XDR-TB lineage2.2.1 in
ERR4796579 Pre-XDR-TB lineage2.2.1 in
ERR4796711 Pre-XDR-TB lineage2.2.1 in
ERR4800512 Pre-XDR-TB lineage2.2.1 in
ERR4797722 Pre-XDR-TB lineage2.2.1 in
ERR4798963 Pre-XDR-TB lineage2.2.1 in
ERR4798304 Pre-XDR-TB lineage2.2.1 in
ERR4799815 Pre-XDR-TB lineage2.2.1 in
ERR4798483 Pre-XDR-TB lineage2.2.1 in
ERR4796404 XDR-TB lineage2.2.1 in
ERR4830936 Pre-XDR-TB lineage2.2.1 np
ERR4830942 Pre-XDR-TB lineage2.2.1 np
ERR4799860 MDR-TB lineage2.2.1 in
ERR4798814 MDR-TB lineage2.2.1 in
ERR4796706 Pre-XDR-TB lineage2.2.1 in
SRR22424786 MDR-TB lineage2.2.1 None
ERR4830905 Pre-XDR-TB lineage2.2.1 np
ERR4797808 XDR-TB lineage2.2.1 in
ERR4830939 Pre-XDR-TB lineage2.2.1 np
ERR4798082 MDR-TB lineage2.2.1 in
ERR4818464 Pre-XDR-TB lineage2.2.1 gb
ERR4797968 Pre-XDR-TB lineage2.2.1 in
ERR4797363 XDR-TB lineage2.2.1 in
ERR4798665 Pre-XDR-TB lineage2.2.1 in
ERR4798780 Pre-XDR-TB lineage2.2.1 in
ERR2513950 Pre-XDR-TB lineage2.2.1 gb
ERR2516198 Pre-XDR-TB lineage2.2.1 be
ERR4830971 Pre-XDR-TB lineage2.2.1 np
ERR4798402 Pre-XDR-TB lineage2.2.1 None
ERR4800067 Pre-XDR-TB lineage2.2.1 in
ERR4796940 Pre-XDR-TB lineage2.2.1 in
ERR4798621 Pre-XDR-TB lineage2.2.1 in
ERR4799217 Pre-XDR-TB lineage2.2.1 in
SRR22424812 MDR-TB lineage2.2.1 None
ERR4797113 Pre-XDR-TB lineage2.2.1 in
ERR4800144 Pre-XDR-TB lineage2.2.1 None
ERR4830918 Pre-XDR-TB lineage2.2.1 np
ERR4796686 MDR-TB lineage2.2.1 None
ERR4797132 Pre-XDR-TB lineage2.2.1 in
ERR4799979 HR-TB lineage2.2.1 in
ERR4798090 Pre-XDR-TB lineage2.2.1 in
ERR4796543 MDR-TB lineage2.2.1 in
ERR4797208 MDR-TB lineage2.2.1 in