Rv3854c - c.-1080_576del
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
17 MDR-TB
114 Pre-XDR-TB
10 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 143 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 143 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28046122 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261974 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290870 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356683 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261278 | MDR-TB | lineage2.2.1 | None | ERR13266444 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262124 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261355 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262064 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267121 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070032 | Pre-XDR-TB | lineage2.2.1 | None | SRR29230723 | MDR-TB | lineage2.2.1 | None | ERR13266426 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800166 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266810 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266602 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266661 | XDR-TB | lineage2.2.1 | None | ERR4800093 | Other | lineage2.2.1 | None | ERR13261154 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261077 | Pre-XDR-TB | lineage2.2.1 | None | SRR1167138 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262105 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266631 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266783 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276145 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290589 | Pre-XDR-TB | lineage2.2.1 | None | SRR8380932 | MDR-TB | lineage2.2.1 | in | ERR13261966 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290856 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267005 | XDR-TB | lineage2.2.1 | None | SRR28351435 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045539 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351583 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046140 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351193 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800672 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800597 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553937 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044565 | MDR-TB | lineage2.2.1 | None | SRR28351573 | XDR-TB | lineage2.2.1 | None | ERR7162981 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266739 | Pre-XDR-TB | lineage2.2.1 | None | ERR7162984 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800513 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424786 | MDR-TB | lineage2.2.1 | None | ERR11044474 | Pre-XDR-TB | lineage2.2.1 | None | SRR18593229 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266930 | XDR-TB | lineage2.2.1 | None | ERR13266910 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261383 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266051 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163483 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266595 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260963 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261281 | MDR-TB | lineage2.2.1 | None | ERR13290587 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267066 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266879 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262091 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267132 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266648 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175253 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424798 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261546 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266538 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800286 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267026 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262165 | XDR-TB | lineage2.2.1 | None | ERR13266836 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261341 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231481 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266724 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517090 | MDR-TB | lineage2.2.1 | gb | ERR13260980 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266842 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800682 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351326 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351425 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800347 | XDR-TB | lineage2.2.1 | None | ERR13262163 | XDR-TB | lineage2.2.1 | None | ERR4818630 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351165 | Pre-XDR-TB | lineage2.2.1 | None | ERR9125282 | MDR-TB | lineage2.2.1 | None | ERR13266936 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267113 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261247 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261986 | HR-TB | lineage2.2.1 | None | ERR13267111 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424812 | MDR-TB | lineage2.2.1 | None | ERR13266601 | Pre-XDR-TB | lineage2.2.1 | None | SRR28858522 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800144 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261306 | MDR-TB | lineage2.2.1 | None | ERR4796686 | MDR-TB | lineage2.2.1 | None | ERR13266084 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266419 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266947 | XDR-TB | lineage2.2.1 | None | ERR4800653 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424794 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290586 | Pre-XDR-TB | lineage2.2.1 | None | SRR18149468 | Pre-XDR-TB | lineage2.2.1 | None | SRR7068977 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266039 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266560 | XDR-TB | lineage2.2.1 | None | ERR13266861 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266574 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267116 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068484 | MDR-TB | lineage2.2.1 | None | SRR29231198 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261374 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351271 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351489 | MDR-TB | lineage2.2.1 | None | SRR28351547 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424821 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175242 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261480 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045664 | MDR-TB | lineage2.2.1 | None | SRR16100248 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261528 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267115 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261151 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266790 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175225 | XDR-TB | lineage2.2.1 | None | ERR4800632 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163462 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058382 | MDR-TB | lineage2.2.1 | None | SRR22175206 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291803 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261530 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165376 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016755 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267023 | MDR-TB | lineage2.2.1 | None | ERR13266962 | MDR-TB | lineage2.2.1 | None | ERR13290588 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266887 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267029 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261240 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267022 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261158 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261145 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262096 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261218 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798402 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
