Rv3854c - c.140delT


Drug resistance types
0 Sensitive 2 RR-TB 9 HR-TB 23 MDR-TB 51 Pre-XDR-TB 8 XDR-TB 20 Other
lineage Counts
lineage Count
lineage2.2.1 46
lineage4.1.3 3
lineage4.1.2.1 11
lineage2.1 1
lineage4.8 3
lineage4.3.4.2 3
lineage4.6.1.2 4
lineage3.1.2.1 17
lineage4.4.1.1.1 9
lineage2.2.2 2
lineage1.2.2 2
lineage3 1
lineage2.2.1;lineage4.8 1
lineage2.2.1.2 1
lineage4.4.1.1 2
lineage2.2.1.1 4
lineage4.3.2 1
lineage1.1.2 1
lineage4.1.2.1;lineage4.4.1.1 1
spoligotype Counts
spoligotype Count
None 113
Geographic prevalence
Country level data for this variant is available for 25 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1368340 Pre-XDR-TB lineage2.2.1 None
SRR1368337 XDR-TB lineage2.2.1 None
ERR2510846 Pre-XDR-TB lineage2.2.1 it
SRR023476 HR-TB lineage4.1.3 None
SRR3086359 Pre-XDR-TB lineage2.2.1 None
SRR1368339 XDR-TB lineage2.2.1 None
ERR3275954 Other lineage4.1.2.1 nl
SRR13423582 Pre-XDR-TB lineage2.1 None
ERR4820047 HR-TB lineage4.8 gb
ERR5866467 Pre-XDR-TB lineage4.3.4.2 None
ERR2707224 MDR-TB lineage4.6.1.2 cd
SRR7069997 HR-TB lineage4.1.2.1 None
ERR4813818 Pre-XDR-TB lineage4.3.4.2 None
SRR20632770 XDR-TB lineage2.2.1 None
SRR17688640 HR-TB lineage2.2.1 None
ERR1654690 MDR-TB lineage4.6.1.2 None
SRR16058318 Other lineage3.1.2.1 None
SRR1167377 Pre-XDR-TB lineage4.4.1.1.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SAMN02403578 Pre-XDR-TB lineage4.4.1.1.1 za
ERR5866466 Pre-XDR-TB lineage4.3.4.2 None
SRR16058692 Other lineage3.1.2.1 None
SRR28393822 MDR-TB lineage4.1.2.1 None
SRR28045863 Other lineage1.2.2 None
SRR27069367 XDR-TB lineage2.2.1 None
SRR27069383 Pre-XDR-TB lineage2.2.1 None
SRR27069380 Pre-XDR-TB lineage2.2.1 None
SRR28394213 Pre-XDR-TB lineage4.1.2.1 None
SRR28045855 Other lineage1.2.2 None
61f9fc05-6b4f-4d4c-b8f4-0a8de45d9643 Pre-XDR-TB lineage2.2.1 None
725de17c-a3da-4613-87c2-a53d49149ad3 Pre-XDR-TB lineage2.2.1 None
ERR4831508 Pre-XDR-TB lineage3 pk
SAMN02403579 MDR-TB lineage4.4.1.1.1 za
SRR3085358 Pre-XDR-TB lineage2.2.1 None
SRR14801488 Other lineage2.2.1;lineage4.8 None
SRR21276944 Pre-XDR-TB lineage2.2.1.2 None
SRR6831819 MDR-TB lineage2.2.1 None
SRR16057959 Other lineage3.1.2.1 None
SRR3742662 XDR-TB lineage2.2.1 None
SRR6458448 Pre-XDR-TB lineage2.2.1 None
SRR1168971 MDR-TB lineage4.4.1.1.1 None
ERR2653108 Pre-XDR-TB lineage4.1.2.1 None
ERR8665718 Pre-XDR-TB lineage2.2.1 None
SRR7517678 MDR-TB lineage4.4.1.1 cd
SRR3086407 Pre-XDR-TB lineage2.2.1 None
ERR4423714 MDR-TB lineage4.4.1.1 None
SRR16058032 Other lineage3.1.2.1 None
ERR3335779 Pre-XDR-TB lineage3.1.2.1 pk
ERR9124949 Other lineage3.1.2.1 None
SRR15316584 MDR-TB lineage2.2.1 None
SRR15316550 Pre-XDR-TB lineage2.2.1.1 None
SRR16058694 Other lineage3.1.2.1 None
ERR2707124 MDR-TB lineage4.6.1.2 cd
SRR026443 MDR-TB lineage4.1.3 None
SRR8651572 Pre-XDR-TB lineage2.2.1 cn
SRR3742660 XDR-TB lineage2.2.1 None
ERR3794509 MDR-TB lineage2.2.1 None
SRR1368338 XDR-TB lineage2.2.1 None
ERR1213893 RR-TB lineage2.2.1 pe
SRR1165636 MDR-TB lineage4.4.1.1.1 None
ERR2513343 HR-TB lineage4.1.2.1 gb
ERR11488374 MDR-TB lineage4.3.2 None
SRR3742658 Pre-XDR-TB lineage2.2.1.1 None
SRR1165658 Pre-XDR-TB lineage4.4.1.1.1 None
SRR16058619 Other lineage3.1.2.1 None
SRR12882683 HR-TB lineage1.1.2 None
SRR21277572 Pre-XDR-TB lineage2.2.1.1 None
ERR4799286 Pre-XDR-TB lineage4.8 in
ERR2510838 Pre-XDR-TB lineage2.2.1 it
ERR9125180 Other lineage3.1.2.1 None
ERR2652990 MDR-TB lineage4.1.2.1 None
ERR2510845 Pre-XDR-TB lineage2.2.1 it
SRR16058072 Other lineage3.1.2.1 None
SRR28923835 MDR-TB lineage2.2.1 None
SRR27069433 Pre-XDR-TB lineage2.2.1 None
SRR28393820 MDR-TB lineage4.1.2.1;lineage4.4.1.1 None
SRR27069419 Pre-XDR-TB lineage2.2.1 None
912bf276-bffe-4bbc-80d4-1b07fef5f2e6 HR-TB lineage4.1.2.1 None
ERR9124962 Other lineage3.1.2.1 None
SRR3085275 Pre-XDR-TB lineage2.2.1 None
SRR3085325 Pre-XDR-TB lineage2.2.1 None
SRR13232427 Pre-XDR-TB lineage2.2.1 None
SRR18054800 MDR-TB lineage2.2.2 None
ERR4798018 Pre-XDR-TB lineage2.2.1 in
ERR9124989 Other lineage3.1.2.1 None
SRR16087898 Pre-XDR-TB lineage2.2.1 None
SRR1172068 MDR-TB lineage4.4.1.1.1 None
ERR9125046 Other lineage3.1.2.1 None
SRR17712106 HR-TB lineage2.2.1 None
SRR1169242 Pre-XDR-TB lineage4.4.1.1.1 None
ERR1199115 MDR-TB lineage4.6.1.2 cd
SRR3742659 Pre-XDR-TB lineage2.2.1 None
ERR5897109 Pre-XDR-TB lineage3.1.2.1 None
SRR21690762 Other lineage4.1.2.1 None
SRR15723112 HR-TB lineage2.2.1 None
ERR2516489 MDR-TB lineage4.1.3 nl
SRR3742661 XDR-TB lineage2.2.1 None
ERR8665851 Pre-XDR-TB lineage2.2.1 None
SRR2024956 Pre-XDR-TB lineage2.2.1 cn
SRR10040152 Pre-XDR-TB lineage2.2.1 None
ERR3132136 RR-TB lineage2.2.1 None
SRR1167352 MDR-TB lineage4.4.1.1.1 None
ERR8665719 Pre-XDR-TB lineage2.2.1 None
ERR4797035 Pre-XDR-TB lineage4.8 in
ERR4831321 Other lineage4.1.2.1 de
ERR9125048 Other lineage3.1.2.1 None
ERR9125059 Other lineage3.1.2.1 None
ERR5897096 Pre-XDR-TB lineage3.1.2.1 None
ERR4799059 Pre-XDR-TB lineage4.1.2.1 in
SRR3082123 Pre-XDR-TB lineage2.2.1 None
SRR1368341 Pre-XDR-TB lineage2.2.1.1 None
SRR2024935 MDR-TB lineage2.2.1 cn
SRR2024918 Pre-XDR-TB lineage2.2.1 cn