Rv3854c - c.140delT
Drug resistance types
0 Sensitive
2 RR-TB
8 HR-TB
30 MDR-TB
53 Pre-XDR-TB
9 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 50 |
| lineage2.2.2 | 4 |
| lineage3.1.2.1 | 17 |
| lineage4.4.1.1.1 | 10 |
| lineage4.3.4.2 | 3 |
| lineage3 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.6.1.2 | 6 |
| lineage4.1.3 | 3 |
| lineage2.1 | 2 |
| lineage4.1.2.1 | 10 |
| lineage2.2.1.1 | 4 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.8 | 3 |
| lineage4.3.2 | 1 |
| lineage1.2.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 122 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR27069433 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR8665718 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR1213893 | RR-TB | lineage2.2.1 | pe |
| SRR29385392 | Pre-XDR-TB | lineage2.2.2 | None |
| ERR2510846 | Pre-XDR-TB | lineage2.2.1 | it |
| SRR27069367 | XDR-TB | lineage2.2.1 | None |
| ERR9125046 | Other | lineage3.1.2.1 | None |
| SRR20632770 | XDR-TB | lineage2.2.1 | None |
| SRR1165636 | MDR-TB | lineage4.4.1.1.1 | None |
| SRR28741128 | MDR-TB | lineage2.2.1 | None |
| ERR5897096 | Pre-XDR-TB | lineage3.1.2.1 | None |
| SRR1368339 | XDR-TB | lineage2.2.1 | None |
| SRR16058619 | Other | lineage3.1.2.1 | None |
| SRR29914428 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR1368337 | XDR-TB | lineage2.2.1 | None |
| SRR3086359 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR5866467 | Pre-XDR-TB | lineage4.3.4.2 | None |
| ERR4813818 | Pre-XDR-TB | lineage4.3.4.2 | None |
| SRR1169292 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
| ERR5866466 | Pre-XDR-TB | lineage4.3.4.2 | None |
| ERR4831508 | Pre-XDR-TB | lineage3 | pk |
| ERR8665719 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28393820 | MDR-TB | lineage4.1.2.1;lineage4.4.1.1 | None |
| SRR27069380 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR2024918 | Pre-XDR-TB | lineage2.2.1 | cn |
| SRR2024935 | MDR-TB | lineage2.2.1 | cn |
| SRR2024956 | Pre-XDR-TB | lineage2.2.1 | cn |
| ERR2707224 | MDR-TB | lineage4.6.1.2 | cd |
| ERR2707124 | MDR-TB | lineage4.6.1.2 | cd |
| SRR1172068 | MDR-TB | lineage4.4.1.1.1 | None |
| SRR026443 | MDR-TB | lineage4.1.3 | None |
| ERR4798018 | Pre-XDR-TB | lineage2.2.1 | in |
| ERR13291104 | MDR-TB | lineage2.1 | None |
| SRR1168971 | MDR-TB | lineage4.4.1.1.1 | None |
| SRR3085358 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR16058692 | Other | lineage3.1.2.1 | None |
| ERR3275954 | Other | lineage4.1.2.1 | nl |
| ERR4831321 | Other | lineage4.1.2.1 | de |
| ERR2510838 | Pre-XDR-TB | lineage2.2.1 | it |
| ERR9124989 | Other | lineage3.1.2.1 | None |
| SRR16057959 | Other | lineage3.1.2.1 | None |
| SRR6831819 | MDR-TB | lineage2.2.1 | None |
| SRR6458448 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR17712106 | HR-TB | lineage2.2.1 | None |
| SRR1169242 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
| SRR3742662 | XDR-TB | lineage2.2.1 | None |
| SRR1167352 | MDR-TB | lineage4.4.1.1.1 | None |
| ERR2653108 | Pre-XDR-TB | lineage4.1.2.1 | None |
| SRR15723112 | HR-TB | lineage2.2.1 | None |
| ERR9125180 | Other | lineage3.1.2.1 | None |
| SRR1165658 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
| ERR3132136 | RR-TB | lineage2.2.1 | None |
| SAMN02403579 | MDR-TB | lineage4.4.1.1.1 | za |
| ERR9124949 | Other | lineage3.1.2.1 | None |
| SRR15316550 | Pre-XDR-TB | lineage2.2.1.1 | None |
| ERR9125048 | Other | lineage3.1.2.1 | None |
| ERR9125059 | Other | lineage3.1.2.1 | None |
| SRR16087898 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR1368341 | Pre-XDR-TB | lineage2.2.1.1 | None |
| SRR7069997 | HR-TB | lineage4.1.2.1 | None |
| SRR1368338 | XDR-TB | lineage2.2.1 | None |
| SRR12882683 | HR-TB | lineage1.1.2 | None |
| SRR28741123 | MDR-TB | lineage2.2.1 | None |
| ERR13284908 | MDR-TB | lineage2.2.1 | None |
| SRR29914431 | Pre-XDR-TB | lineage2.2.2 | None |
| SRR3742658 | Pre-XDR-TB | lineage2.2.1.1 | None |
| ERR5897109 | Pre-XDR-TB | lineage3.1.2.1 | None |
| SRR3742659 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR3742661 | XDR-TB | lineage2.2.1 | None |
| SRR16058318 | Other | lineage3.1.2.1 | None |
| SRR29231752 | MDR-TB | lineage4.6.1.2 | None |
| ERR3335779 | Pre-XDR-TB | lineage3.1.2.1 | pk |
| SRR16058694 | Other | lineage3.1.2.1 | None |
| SRR28394213 | Pre-XDR-TB | lineage4.1.2.1 | None |
| ERR1199115 | MDR-TB | lineage4.6.1.2 | cd |
| ERR2516489 | MDR-TB | lineage4.1.3 | nl |
| ERR8665851 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR7517678 | MDR-TB | lineage4.4.1.1 | cd |
| SRR15316584 | MDR-TB | lineage2.2.1 | None |
| SRR3085275 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR14801488 | Other | lineage2.2.1;lineage4.8 | None |
| ERR4423714 | MDR-TB | lineage4.4.1.1 | None |
| SRR21276944 | Pre-XDR-TB | lineage2.2.1.2 | None |
| SRR13232427 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4820047 | HR-TB | lineage4.8 | gb |
| SRR18054800 | MDR-TB | lineage2.2.2 | None |
| ERR2510845 | Pre-XDR-TB | lineage2.2.1 | it |
| SRR28393822 | MDR-TB | lineage4.1.2.1 | None |
| SRR8651572 | Pre-XDR-TB | lineage2.2.1 | cn |
| SRR1167377 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
| SRR21690762 | Other | lineage4.1.2.1 | None |
| SRR27069383 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR16058032 | Other | lineage3.1.2.1 | None |
| SRR29914427 | XDR-TB | lineage2.2.1 | None |
| ERR4799059 | Pre-XDR-TB | lineage4.1.2.1 | in |
| SRR29231553 | MDR-TB | lineage4.6.1.2 | None |
| SRR3082123 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR3794509 | MDR-TB | lineage2.2.1 | None |
| SRR1368340 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR023476 | HR-TB | lineage4.1.3 | None |
| SAMN02403578 | Pre-XDR-TB | lineage4.4.1.1.1 | za |
| SRR21277572 | Pre-XDR-TB | lineage2.2.1.1 | None |
| SRR13423582 | Pre-XDR-TB | lineage2.1 | None |
| ERR2652990 | MDR-TB | lineage4.1.2.1 | None |
| SRR30180204 | MDR-TB | lineage2.2.1 | None |
| SRR17688640 | HR-TB | lineage2.2.1 | None |
| SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None |
| ERR4799286 | Pre-XDR-TB | lineage4.8 | in |
| SRR16058072 | Other | lineage3.1.2.1 | None |
| ERR11488374 | MDR-TB | lineage4.3.2 | None |
| SRR28923835 | MDR-TB | lineage2.2.1 | None |
| SRR28045863 | Other | lineage1.2.2 | None |
| ERR1654690 | MDR-TB | lineage4.6.1.2 | None |
| ERR4797035 | Pre-XDR-TB | lineage4.8 | in |
| SRR3086407 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR9124962 | Other | lineage3.1.2.1 | None |
| SRR10040152 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR3085325 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR2513343 | HR-TB | lineage4.1.2.1 | gb |
| SRR3742660 | XDR-TB | lineage2.2.1 | None |
| SRR27069419 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR28045855 | Other | lineage1.2.2 | None |
