Rv3854c - c.140delT
Drug resistance types
0 Sensitive
2 RR-TB
8 HR-TB
23 MDR-TB
49 Pre-XDR-TB
8 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.2 | 1 |
| lineage2.2.1 | 44 |
| lineage2.2.2 | 2 |
| lineage3.1.2.1 | 17 |
| lineage4.4.1.1.1 | 9 |
| lineage4.1.2.1 | 10 |
| lineage4.1.3 | 3 |
| lineage4.8 | 3 |
| lineage2.2.1.1 | 4 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 1 |
| lineage2.1 | 1 |
| lineage4.3.4.2 | 3 |
| lineage4.6.1.2 | 4 |
| lineage1.2.2 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 25 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21276944 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR13232427 | Pre-XDR-TB | lineage2.2.1 | None | SRR18054800 | MDR-TB | lineage2.2.2 | None | ERR4798018 | Pre-XDR-TB | lineage2.2.1 | in | SRR16057959 | Other | lineage3.1.2.1 | None | SRR3742662 | XDR-TB | lineage2.2.1 | None | SRR1169242 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR2653108 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR21690762 | Other | lineage4.1.2.1 | None | SRR15723112 | HR-TB | lineage2.2.1 | None | ERR2516489 | MDR-TB | lineage4.1.3 | nl | SRR2024956 | Pre-XDR-TB | lineage2.2.1 | cn | SRR10040152 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058032 | Other | lineage3.1.2.1 | None | ERR4797035 | Pre-XDR-TB | lineage4.8 | in | SRR15316550 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4831321 | Other | lineage4.1.2.1 | de | SRR3742660 | XDR-TB | lineage2.2.1 | None | SRR3082123 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368341 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR2024935 | MDR-TB | lineage2.2.1 | cn | SRR2024918 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1368338 | XDR-TB | lineage2.2.1 | None | ERR1213893 | RR-TB | lineage2.2.1 | pe | SRR1165636 | MDR-TB | lineage4.4.1.1.1 | None | SRR1368340 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513343 | HR-TB | lineage4.1.2.1 | gb | ERR11488374 | MDR-TB | lineage4.3.2 | None | SRR1368337 | XDR-TB | lineage2.2.1 | None | ERR2510846 | Pre-XDR-TB | lineage2.2.1 | it | SRR3086359 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368339 | XDR-TB | lineage2.2.1 | None | SRR1165658 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR16058619 | Other | lineage3.1.2.1 | None | SRR12882683 | HR-TB | lineage1.1.2 | None | SRR13423582 | Pre-XDR-TB | lineage2.1 | None | ERR4799286 | Pre-XDR-TB | lineage4.8 | in | ERR5866467 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR9125180 | Other | lineage3.1.2.1 | None | ERR4813818 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1654690 | MDR-TB | lineage4.6.1.2 | None | SRR16058318 | Other | lineage3.1.2.1 | None | SRR1167377 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR16058072 | Other | lineage3.1.2.1 | None | SRR27069433 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045863 | Other | lineage1.2.2 | None | SRR27069367 | XDR-TB | lineage2.2.1 | None | SRR28393820 | MDR-TB | lineage4.1.2.1;lineage4.4.1.1 | None | SRR27069419 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394213 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3335779 | Pre-XDR-TB | lineage3.1.2.1 | pk | ERR4831508 | Pre-XDR-TB | lineage3 | pk | ERR5897096 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR5897109 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR8651572 | Pre-XDR-TB | lineage2.2.1 | cn | ERR9124962 | Other | lineage3.1.2.1 | None | SRR3085275 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085325 | Pre-XDR-TB | lineage2.2.1 | None | ERR9124989 | Other | lineage3.1.2.1 | None | SRR6831819 | MDR-TB | lineage2.2.1 | None | SRR16087898 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172068 | MDR-TB | lineage4.4.1.1.1 | None | ERR9125046 | Other | lineage3.1.2.1 | None | SRR17712106 | HR-TB | lineage2.2.1 | None | ERR1199115 | MDR-TB | lineage4.6.1.2 | cd | SRR6458448 | Pre-XDR-TB | lineage2.2.1 | None | SRR3742659 | Pre-XDR-TB | lineage2.2.1 | None | SRR1168971 | MDR-TB | lineage4.4.1.1.1 | None | ERR8665718 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517678 | MDR-TB | lineage4.4.1.1 | cd | SRR3742661 | XDR-TB | lineage2.2.1 | None | ERR8665851 | Pre-XDR-TB | lineage2.2.1 | None | SRR3086407 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423714 | MDR-TB | lineage4.4.1.1 | None | ERR3132136 | RR-TB | lineage2.2.1 | None | SRR1167352 | MDR-TB | lineage4.4.1.1.1 | None | ERR8665719 | Pre-XDR-TB | lineage2.2.1 | None | ERR9124949 | Other | lineage3.1.2.1 | None | SRR15316584 | MDR-TB | lineage2.2.1 | None | SRR16058694 | Other | lineage3.1.2.1 | None | ERR9125048 | Other | lineage3.1.2.1 | None | ERR9125059 | Other | lineage3.1.2.1 | None | ERR2707124 | MDR-TB | lineage4.6.1.2 | cd | SRR026443 | MDR-TB | lineage4.1.3 | None | ERR4799059 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR3794509 | MDR-TB | lineage2.2.1 | None | SRR023476 | HR-TB | lineage4.1.3 | None | SRR3742658 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3275954 | Other | lineage4.1.2.1 | nl | SRR21277572 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2510838 | Pre-XDR-TB | lineage2.2.1 | it | ERR4820047 | HR-TB | lineage4.8 | gb | ERR2707224 | MDR-TB | lineage4.6.1.2 | cd | SRR7069997 | HR-TB | lineage4.1.2.1 | None | SRR20632770 | XDR-TB | lineage2.2.1 | None | ERR2652990 | MDR-TB | lineage4.1.2.1 | None | SRR17688640 | HR-TB | lineage2.2.1 | None | ERR2510845 | Pre-XDR-TB | lineage2.2.1 | it | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02403578 | Pre-XDR-TB | lineage4.4.1.1.1 | za | ERR5866466 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR16058692 | Other | lineage3.1.2.1 | None | SRR28393822 | MDR-TB | lineage4.1.2.1 | None | SRR28923835 | MDR-TB | lineage2.2.1 | None | SRR27069383 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069380 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045855 | Other | lineage1.2.2 | None | SAMN02403579 | MDR-TB | lineage4.4.1.1.1 | za | SRR3085358 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801488 | Other | lineage2.2.1;lineage4.8 | None |
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