lineage | Count |
---|---|
lineage2.2.1 | 50 |
lineage2.2.2 | 4 |
lineage3.1.2.1 | 17 |
lineage4.4.1.1.1 | 10 |
lineage4.3.4.2 | 3 |
lineage3 | 1 |
lineage4.1.2.1;lineage4.4.1.1 | 1 |
lineage4.6.1.2 | 6 |
lineage4.1.3 | 3 |
lineage2.1 | 2 |
lineage4.1.2.1 | 10 |
lineage2.2.1.1 | 4 |
lineage1.1.2 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1;lineage4.8 | 1 |
lineage2.2.1.2 | 1 |
lineage4.8 | 3 |
lineage4.3.2 | 1 |
lineage1.2.2 | 2 |
spoligotype | Count |
---|---|
None | 122 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR27069433 | Pre-XDR-TB | lineage2.2.1 | None |
ERR8665718 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1213893 | RR-TB | lineage2.2.1 | pe |
SRR29385392 | Pre-XDR-TB | lineage2.2.2 | None |
ERR2510846 | Pre-XDR-TB | lineage2.2.1 | it |
SRR27069367 | XDR-TB | lineage2.2.1 | None |
ERR9125046 | Other | lineage3.1.2.1 | None |
SRR20632770 | XDR-TB | lineage2.2.1 | None |
SRR1165636 | MDR-TB | lineage4.4.1.1.1 | None |
SRR28741128 | MDR-TB | lineage2.2.1 | None |
ERR5897096 | Pre-XDR-TB | lineage3.1.2.1 | None |
SRR1368339 | XDR-TB | lineage2.2.1 | None |
SRR16058619 | Other | lineage3.1.2.1 | None |
SRR29914428 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1368337 | XDR-TB | lineage2.2.1 | None |
SRR3086359 | Pre-XDR-TB | lineage2.2.1 | None |
ERR5866467 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR4813818 | Pre-XDR-TB | lineage4.3.4.2 | None |
SRR1169292 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
ERR5866466 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR4831508 | Pre-XDR-TB | lineage3 | pk |
ERR8665719 | Pre-XDR-TB | lineage2.2.1 | None |
SRR28393820 | MDR-TB | lineage4.1.2.1;lineage4.4.1.1 | None |
SRR27069380 | Pre-XDR-TB | lineage2.2.1 | None |
SRR2024918 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR2024935 | MDR-TB | lineage2.2.1 | cn |
SRR2024956 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR2707224 | MDR-TB | lineage4.6.1.2 | cd |
ERR2707124 | MDR-TB | lineage4.6.1.2 | cd |
SRR1172068 | MDR-TB | lineage4.4.1.1.1 | None |
SRR026443 | MDR-TB | lineage4.1.3 | None |
ERR4798018 | Pre-XDR-TB | lineage2.2.1 | in |
ERR13291104 | MDR-TB | lineage2.1 | None |
SRR1168971 | MDR-TB | lineage4.4.1.1.1 | None |
SRR3085358 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16058692 | Other | lineage3.1.2.1 | None |
ERR3275954 | Other | lineage4.1.2.1 | nl |
ERR4831321 | Other | lineage4.1.2.1 | de |
ERR2510838 | Pre-XDR-TB | lineage2.2.1 | it |
ERR9124989 | Other | lineage3.1.2.1 | None |
SRR16057959 | Other | lineage3.1.2.1 | None |
SRR6831819 | MDR-TB | lineage2.2.1 | None |
SRR6458448 | Pre-XDR-TB | lineage2.2.1 | None |
SRR17712106 | HR-TB | lineage2.2.1 | None |
SRR1169242 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
SRR3742662 | XDR-TB | lineage2.2.1 | None |
SRR1167352 | MDR-TB | lineage4.4.1.1.1 | None |
ERR2653108 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR15723112 | HR-TB | lineage2.2.1 | None |
ERR9125180 | Other | lineage3.1.2.1 | None |
SRR1165658 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
ERR3132136 | RR-TB | lineage2.2.1 | None |
SAMN02403579 | MDR-TB | lineage4.4.1.1.1 | za |
ERR9124949 | Other | lineage3.1.2.1 | None |
SRR15316550 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR9125048 | Other | lineage3.1.2.1 | None |
ERR9125059 | Other | lineage3.1.2.1 | None |
SRR16087898 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1368341 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR7069997 | HR-TB | lineage4.1.2.1 | None |
SRR1368338 | XDR-TB | lineage2.2.1 | None |
SRR12882683 | HR-TB | lineage1.1.2 | None |
SRR28741123 | MDR-TB | lineage2.2.1 | None |
ERR13284908 | MDR-TB | lineage2.2.1 | None |
SRR29914431 | Pre-XDR-TB | lineage2.2.2 | None |
SRR3742658 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR5897109 | Pre-XDR-TB | lineage3.1.2.1 | None |
SRR3742659 | Pre-XDR-TB | lineage2.2.1 | None |
SRR3742661 | XDR-TB | lineage2.2.1 | None |
SRR16058318 | Other | lineage3.1.2.1 | None |
SRR29231752 | MDR-TB | lineage4.6.1.2 | None |
ERR3335779 | Pre-XDR-TB | lineage3.1.2.1 | pk |
SRR16058694 | Other | lineage3.1.2.1 | None |
SRR28394213 | Pre-XDR-TB | lineage4.1.2.1 | None |
ERR1199115 | MDR-TB | lineage4.6.1.2 | cd |
ERR2516489 | MDR-TB | lineage4.1.3 | nl |
ERR8665851 | Pre-XDR-TB | lineage2.2.1 | None |
SRR7517678 | MDR-TB | lineage4.4.1.1 | cd |
SRR15316584 | MDR-TB | lineage2.2.1 | None |
SRR3085275 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14801488 | Other | lineage2.2.1;lineage4.8 | None |
ERR4423714 | MDR-TB | lineage4.4.1.1 | None |
SRR21276944 | Pre-XDR-TB | lineage2.2.1.2 | None |
SRR13232427 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4820047 | HR-TB | lineage4.8 | gb |
SRR18054800 | MDR-TB | lineage2.2.2 | None |
ERR2510845 | Pre-XDR-TB | lineage2.2.1 | it |
SRR28393822 | MDR-TB | lineage4.1.2.1 | None |
SRR8651572 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR1167377 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
SRR21690762 | Other | lineage4.1.2.1 | None |
SRR27069383 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16058032 | Other | lineage3.1.2.1 | None |
SRR29914427 | XDR-TB | lineage2.2.1 | None |
ERR4799059 | Pre-XDR-TB | lineage4.1.2.1 | in |
SRR29231553 | MDR-TB | lineage4.6.1.2 | None |
SRR3082123 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3794509 | MDR-TB | lineage2.2.1 | None |
SRR1368340 | Pre-XDR-TB | lineage2.2.1 | None |
SRR023476 | HR-TB | lineage4.1.3 | None |
SAMN02403578 | Pre-XDR-TB | lineage4.4.1.1.1 | za |
SRR21277572 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR13423582 | Pre-XDR-TB | lineage2.1 | None |
ERR2652990 | MDR-TB | lineage4.1.2.1 | None |
SRR30180204 | MDR-TB | lineage2.2.1 | None |
SRR17688640 | HR-TB | lineage2.2.1 | None |
SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None |
ERR4799286 | Pre-XDR-TB | lineage4.8 | in |
SRR16058072 | Other | lineage3.1.2.1 | None |
ERR11488374 | MDR-TB | lineage4.3.2 | None |
SRR28923835 | MDR-TB | lineage2.2.1 | None |
SRR28045863 | Other | lineage1.2.2 | None |
ERR1654690 | MDR-TB | lineage4.6.1.2 | None |
ERR4797035 | Pre-XDR-TB | lineage4.8 | in |
SRR3086407 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9124962 | Other | lineage3.1.2.1 | None |
SRR10040152 | Pre-XDR-TB | lineage2.2.1 | None |
SRR3085325 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2513343 | HR-TB | lineage4.1.2.1 | gb |
SRR3742660 | XDR-TB | lineage2.2.1 | None |
SRR27069419 | Pre-XDR-TB | lineage2.2.1 | None |
SRR28045855 | Other | lineage1.2.2 | None |