Rv3854c - c.32delG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
6 HR-TB
68 MDR-TB
37 Pre-XDR-TB
1 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 43 |
| lineage4.3.4.2.1 | 58 |
| lineage4.1.2.1 | 2 |
| lineage4.7 | 4 |
| lineage1.2.2.2 | 2 |
| lineage2.2.1;lineage4.3.4.2.1 | 1 |
| lineage4.2.1 | 2 |
| lineage4.3.2;lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 113 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10877868 | MDR-TB | lineage2.2.1 | None | ERR11488706 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488411 | MDR-TB | lineage4.3.4.2.1 | None | SRR29385272 | Pre-XDR-TB | lineage2.2.1 | None | ERR10877897 | Pre-XDR-TB | lineage2.2.1 | None | ERR10868477 | MDR-TB | lineage2.2.1 | None | SRR29274203 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11488373 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488962 | MDR-TB | lineage4.3.4.2.1 | None | SRR1159370 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055428 | MDR-TB | lineage2.2.1 | None | ERR11488523 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488773 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488620 | MDR-TB | lineage4.3.4.2.1 | None | SRR16370459 | MDR-TB | lineage2.2.1 | None | ERR11488532 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488450 | MDR-TB | lineage4.3.4.2.1 | None | ERR11252568 | MDR-TB | lineage4.3.4.2.1 | None | SRR29050878 | HR-TB | lineage4.7 | None | SRR8758895 | Pre-XDR-TB | lineage2.2.1 | None | SRR7249138 | MDR-TB | lineage2.2.1 | None | ERR11488452 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488449 | MDR-TB | lineage4.3.4.2.1 | None | SRR29051346 | HR-TB | lineage4.7 | None | SRR1181104 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488635 | MDR-TB | lineage4.3.4.2.1 | None | ERR4799880 | Pre-XDR-TB | lineage2.2.1 | in | SRR475257 | MDR-TB | lineage2.2.1 | None | SRR29055761 | MDR-TB | lineage2.2.1 | None | ERR11488340 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489062 | MDR-TB | lineage4.3.4.2.1 | None | SRR21685344 | MDR-TB | lineage2.2.1 | None | ERR2513293 | HR-TB | lineage1.2.2.2 | gb | SRR1181121 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488776 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488917 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488553 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488370 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172367 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181248 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488474 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488544 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488684 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509858 | MDR-TB | lineage2.2.1;lineage4.3.4.2.1 | None | ERR11488538 | MDR-TB | lineage4.3.4.2.1 | None | ERR8665533 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291193 | MDR-TB | lineage2.2.1 | None | ERR11488512 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488383 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488994 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488496 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488400 | MDR-TB | lineage4.3.4.2.1 | None | ERR386990 | HR-TB | lineage1.2.2.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR11488440 | MDR-TB | lineage4.3.4.2.1 | None | SRR1163329 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488691 | MDR-TB | lineage4.3.4.2.1 | None | SRR16089404 | MDR-TB | lineage2.2.1 | None | SRR21887662 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488845 | MDR-TB | lineage4.3.4.2.1 | None | SRR29772567 | MDR-TB | lineage2.2.1 | None | SRR2024971 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11488575 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR1158946 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488676 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488782 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488746 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488856 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488443 | MDR-TB | lineage4.3.2;lineage4.3.4.2.1 | None | ERR7975667 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488562 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488837 | MDR-TB | lineage4.3.4.2.1 | None | SRR16370691 | MDR-TB | lineage2.2.1 | None | SRR24827310 | MDR-TB | lineage2.2.1 | None | SRR1169090 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488500 | MDR-TB | lineage4.3.4.2.1 | None | SRR7249140 | MDR-TB | lineage2.2.1 | None | SRR28858523 | MDR-TB | lineage2.2.1 | None | ERR867534 | Pre-XDR-TB | lineage4.2.1 | None | SRR8758894 | Pre-XDR-TB | lineage2.2.1 | None | SRR28859987 | MDR-TB | lineage2.2.1 | None | SRR29051502 | HR-TB | lineage4.7 | None | SRR1163290 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291449 | MDR-TB | lineage2.2.1 | None | SRR25389551 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488807 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488772 | MDR-TB | lineage4.3.4.2.1 | None | SRR25827764 | Pre-XDR-TB | lineage2.2.1 | None | ERR11489063 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488737 | Pre-XDR-TB | lineage4.3.4.2.1 | None | SRR9738502 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11488779 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488643 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488334 | MDR-TB | lineage4.3.4.2.1 | None | ERR3509850 | MDR-TB | lineage4.3.4.2.1 | None | ERR11489028 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR8665534 | Pre-XDR-TB | lineage2.2.1 | None | SRR7249136 | MDR-TB | lineage2.2.1 | None | ERR11252494 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488709 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR11488931 | XDR-TB | lineage4.3.4.2.1 | None | ERR11488996 | MDR-TB | lineage4.3.4.2.1 | None | SRR1181090 | Pre-XDR-TB | lineage2.2.1 | None | ERR3509862 | MDR-TB | lineage4.3.4.2.1 | None | ERR11488335 | Other | lineage4.3.4.2.1 | None | ERR11488655 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02419564 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419610 | Pre-XDR-TB | lineage2.2.1 | by | ERR11488515 | MDR-TB | lineage4.3.4.2.1 | None | SRR13583373 | HR-TB | lineage4.7 | None | ERR11488882 | MDR-TB | lineage4.3.4.2.1 | None | SRR29093948 | MDR-TB | lineage2.2.1 | None | ERR11488768 | Pre-XDR-TB | lineage4.3.4.2.1 | None |
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