Rv3854c - c.341delA
Drug resistance types
0 Sensitive
7 RR-TB
4 HR-TB
60 MDR-TB
57 Pre-XDR-TB
4 XDR-TB
8 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.3 | 2 |
| lineage3 | 8 |
| lineage2.2.1 | 103 |
| lineage4.1.2.1 | 4 |
| lineage4.2.1.1 | 3 |
| lineage2 | 1 |
| lineage4.7 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.2.2 | 2 |
| lineage4.3.4.1 | 5 |
| lineage4 | 1 |
| lineage4.8.1 | 2 |
| 1 | |
| lineage4.3.3;lineage2.2.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage5.1.2 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 33 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818945 | Other | lineage4.1.3 | None | ERR3275507 | HR-TB | lineage3 | nl | SRR5153220 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516950 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516475 | MDR-TB | lineage4.1.3 | None | ERR2677418 | Pre-XDR-TB | lineage2.2.1 | de | ERR2677467 | Pre-XDR-TB | lineage2.2.1 | de | ERR2517433 | HR-TB | lineage3 | nl | ERR2516981 | Pre-XDR-TB | lineage2.2.1 | gb | ERR3275809 | Other | lineage2.2.1 | nl | ERR2517004 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2517047 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516798 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2653088 | MDR-TB | lineage4.1.2.1 | None | ERR4827437 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653160 | MDR-TB | lineage4.1.2.1 | None | ERR4827893 | MDR-TB | lineage2.2.1 | None | ERR275215 | MDR-TB | lineage2.2.1 | pt | ERR4830152 | Pre-XDR-TB | lineage2.2.1 | tj | SRR5709784 | Other | lineage2.2.1 | th | SRR5709831 | Other | lineage2.2.1 | th | ERR4830898 | MDR-TB | lineage2.2.1 | None | ERR4830612 | MDR-TB | lineage2.2.1 | tm | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6257006 | MDR-TB | lineage2.2.1 | None | SRR6257026 | MDR-TB | lineage2.2.1 | None | ERR4831404 | XDR-TB | lineage2.2.1 | de | ERR4830165 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828777 | MDR-TB | lineage4.2.1.1 | None | ERR4828783 | MDR-TB | lineage2.2.1 | None | SRR6257071 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831196 | HR-TB | lineage3 | de | SRR6832171 | Pre-XDR-TB | lineage2 | None | SRR6831816 | MDR-TB | lineage2.2.1 | None | ERR11067399 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785496 | MDR-TB | lineage2.2.1 | None | SRR7516404 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832440 | MDR-TB | lineage2.2.1 | None | SRR6832755 | MDR-TB | lineage2.2.1 | None | SRR6832829 | MDR-TB | lineage2.2.1 | None | SRR6831732 | MDR-TB | lineage2.2.1 | None | ERR2446119 | HR-TB | lineage3 | nl | SRR7516405 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645907 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755666 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755709 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043389 | MDR-TB | lineage4.7 | None | SRR7765355 | MDR-TB | lineage4.2.1.1 | None | SRR7781500 | MDR-TB | lineage2.2.1 | None | DRR184906 | MDR-TB | lineage2.2.1 | vn | ERR1035245 | MDR-TB | lineage2.2.1 | pt | ERR10762253 | MDR-TB | lineage2.2.1 | None | ERR11042969 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043511 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043693 | MDR-TB | lineage4.1.2.1 | None | ERR11043526 | MDR-TB | lineage2.2.1 | None | ERR11043701 | MDR-TB | lineage2.2.1 | None | ERR11043690 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639746 | MDR-TB | lineage2.2.1 | None | ERR3287497 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4796458 | MDR-TB | lineage3 | in | ERR4276867 | XDR-TB | lineage2.2.1 | None | ERR4276868 | XDR-TB | lineage2.2.1 | None | ERR4796868 | MDR-TB | lineage3 | in | ERR4799388 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797557 | MDR-TB | lineage3 | in | ERR4811161 | Pre-XDR-TB | lineage4.2.2 | cn | ERR4799647 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800253 | MDR-TB | lineage3 | in | ERR5864890 | MDR-TB | lineage2.2.1 | None | ERR4811362 | Pre-XDR-TB | lineage4.2.2 | cn | ERR5864889 | MDR-TB | lineage2.2.1 | None | ERR5864888 | MDR-TB | lineage2.2.1 | None | ERR5865964 | MDR-TB | lineage2.2.1 | None | ERR5865800 | MDR-TB | lineage2.2.1 | None | ERR5865871 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865872 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865946 | MDR-TB | lineage2.2.1 | None | ERR5865799 | MDR-TB | lineage2.2.1 | None | ERR5865947 | MDR-TB | lineage2.2.1 | None | ERR5865948 | MDR-TB | lineage2.2.1 | None | ERR7362020 | MDR-TB | lineage2.2.1 | None | ERR5866011 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866113 | MDR-TB | lineage2.2.1 | None | ERR5866313 | Pre-XDR-TB | lineage2.2.1 | None | ERR718432 | Other | lineage2.2.1 | th | ERR5866114 | MDR-TB | lineage2.2.1 | None | ERR5866311 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866312 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737709 | MDR-TB | lineage2.2.1 | None | ERR8665526 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911226 | Pre-XDR-TB | lineage2.2.1 | md | ERR7911313 | MDR-TB | lineage2.2.1 | vn | ERR7975659 | MDR-TB | lineage2.2.1 | None | ERR7975649 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774586 | MDR-TB | lineage2.2.1 | None | ERR8665722 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665723 | Pre-XDR-TB | lineage2.2.1 | None | ERR973455 | RR-TB | lineage4.3.4.1 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | ERR973453 | RR-TB | lineage4.3.4.1 | None | ERR9896169 | Other | lineage2.2.1 | None | ERR973456 | RR-TB | lineage4.3.4.1 | None | ERR973454 | RR-TB | lineage4.3.4.1 | None | ERR973458 | RR-TB | lineage4 | None | ERR973457 | RR-TB | lineage4.3.4.1 | None | ERR11050135 | Pre-XDR-TB | lineage2.2.1 | None | ERR9901825 | Other | lineage2.2.1 | None | ERR9907685 | MDR-TB | lineage4.8.1 | None | ERR9907755 | Pre-XDR-TB | lineage4.8.1 | None | SRR10397210 | MDR-TB | lineage2.2.1 | None | SRR11972311 | Pre-XDR-TB | None | SRR13232458 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | SRR12199409 | Other | lineage1.2.2.2 | None | SRR13232456 | MDR-TB | lineage4.3.3;lineage2.2.1 | None | SRR14782520 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232657 | MDR-TB | lineage2.2.1 | None | SRR13232697 | Pre-XDR-TB | lineage2.2.1 | None | SRR1577806 | MDR-TB | lineage2.2.1 | None | SRR14807627 | XDR-TB | lineage2.2.1 | None | SRR1577830 | MDR-TB | lineage2.2.1 | None | SRR14801310 | MDR-TB | lineage2.2.1 | None | SRR18714834 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088264 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715490 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714956 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715081 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715077 | MDR-TB | lineage2.2.1 | None | SRR18715441 | MDR-TB | lineage5.1.2 | None | SRR20970010 | Pre-XDR-TB | lineage2.2.1 | None | ERR158602 | Pre-XDR-TB | lineage2.2.1 | gb | ERR11069124 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081269 | MDR-TB | lineage4.7 | None | ERR11243549 | Pre-XDR-TB | lineage2.2 | None | SRR21887655 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081826 | RR-TB | lineage4.1.2.1 | None | ERR11243547 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243548 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085317 | MDR-TB | lineage4.2.1.1 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None |
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