Rv3854c - c.341delA
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
5 RR-TB
12 HR-TB
121 MDR-TB
101 Pre-XDR-TB
7 XDR-TB
17 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 220 |
| lineage4.7 | 3 |
| lineage4.3.4.1 | 4 |
| lineage4.1.2.1 | 5 |
| lineage4.8 | 4 |
| lineage3 | 9 |
| lineage4.8.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage2.2.1;lineage4.3.3 | 3 |
| lineage4.2.2 | 3 |
| lineage4.1.3 | 1 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage4.9 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.2 | 1 |
| lineage5.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 263 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6832440 | MDR-TB | lineage2.2.1 | None | SRR6832755 | MDR-TB | lineage2.2.1 | None | SRR20970010 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043389 | MDR-TB | lineage4.7 | None | ERR973456 | RR-TB | lineage4.3.4.1 | None | ERR9901825 | Other | lineage2.2.1 | None | SRR24256174 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081826 | RR-TB | lineage4.1.2.1 | None | SRR24255950 | MDR-TB | lineage2.2.1 | None | ERR4827893 | MDR-TB | lineage2.2.1 | None | SRR21732489 | Other | lineage2.2.1 | None | ERR973455 | RR-TB | lineage4.3.4.1 | None | ERR11488642 | Pre-XDR-TB | lineage4.8 | None | ERR3275507 | HR-TB | lineage3 | nl | SRR29055885 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865799 | MDR-TB | lineage2.2.1 | None | ERR5866312 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081269 | MDR-TB | lineage4.7 | None | ERR11243549 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285601 | Other | lineage2.2.1 | None | SRR29539814 | MDR-TB | lineage2.2.1 | None | SRR29539438 | Pre-XDR-TB | lineage2.2.1 | None | ERR7362020 | MDR-TB | lineage2.2.1 | None | ERR973453 | RR-TB | lineage4.3.4.1 | None | SRR29539418 | MDR-TB | lineage2.2.1 | None | SRR29539690 | Pre-XDR-TB | lineage2.2.1 | None | ERR9907755 | Pre-XDR-TB | lineage4.8.1 | None | SRR29539437 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289450 | HR-TB | lineage2.2.1 | None | ERR5864889 | MDR-TB | lineage2.2.1 | None | ERR5865872 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662670 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801310 | MDR-TB | lineage2.2.1 | None | ERR13262157 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284412 | MDR-TB | lineage2.2.1 | None | SRR29772496 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR6257006 | MDR-TB | lineage2.2.1 | None | SRR10397210 | MDR-TB | lineage2.2.1 | None | ERR973457 | RR-TB | lineage4.3.4.1 | None | SRR24256093 | Pre-XDR-TB | lineage2.2.1 | None | ERR11774905 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251796 | Other | lineage2.2.1 | None | SRR29539189 | MDR-TB | lineage2.2.1 | None | ERR13285133 | MDR-TB | lineage2.2.1 | None | SRR13232697 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276181 | XDR-TB | lineage2.2.1 | None | SRR29538972 | MDR-TB | lineage2.2.1 | None | ERR7975649 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975659 | MDR-TB | lineage2.2.1 | None | ERR10762253 | MDR-TB | lineage2.2.1 | None | SRR29539069 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715077 | MDR-TB | lineage2.2.1 | None | SRR3675220 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284763 | MDR-TB | lineage2.2.1 | None | SRR7781500 | MDR-TB | lineage2.2.1 | None | ERR11043690 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488550 | Pre-XDR-TB | lineage4.8 | None | SRR24255949 | MDR-TB | lineage2.2.1 | None | SRR25827532 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307785 | MDR-TB | lineage2.2.1 | None | SRR29539159 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827437 | HR-TB | lineage2.2.1 | None | SRR29126903 | HR-TB | lineage3.1.2.1 | None | ERR13276259 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715081 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043701 | MDR-TB | lineage2.2.1 | None | ERR2653160 | MDR-TB | lineage4.1.2.1 | None | ERR4830152 | Pre-XDR-TB | lineage2.2.1 | tj | ERR275215 | MDR-TB | lineage2.2.1 | pt | SRR29681316 | MDR-TB | lineage2.2.1 | None | SRR29539658 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR18714956 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755666 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600592 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307488 | HR-TB | lineage2.2.1 | None | ERR5866011 | Pre-XDR-TB | lineage2.2.1 | None | ERR11773816 | Pre-XDR-TB | lineage2.2.1 | None | ERR718432 | Other | lineage2.2.1 | th | SRR28498382 | XDR-TB | lineage2.2.1 | None | ERR551647 | MDR-TB | lineage2.2.1 | None | ERR9907685 | MDR-TB | lineage4.8.1 | None | ERR5864888 | MDR-TB | lineage2.2.1 | None | ERR4828783 | MDR-TB | lineage2.2.1 | None | ERR7911313 | MDR-TB | lineage2.2.1 | vn | ERR2517004 | Pre-XDR-TB | lineage2.2.1 | gb | ERR553011 | MDR-TB | lineage2.2.1 | None | ERR552453 | MDR-TB | lineage2.2.1 | None | SRR5709784 | Other | lineage2.2.1 | th | ERR1035245 | MDR-TB | lineage2.2.1 | pt | ERR2600566 | Pre-XDR-TB | lineage2.2.1 | None | SRR28434985 | MDR-TB | lineage2.2.1 | None | SRR29539117 | MDR-TB | lineage2.2.1 | None | SRR25827672 | Pre-XDR-TB | lineage2.2.1 | None | ERR158602 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2307781 | MDR-TB | lineage2.2.1 | None | SRR25207082 | Pre-XDR-TB | lineage4.2.2 | None | ERR2600464 | MDR-TB | lineage2.2.1 | None | SRR21691120 | Other | lineage2.2.1 | None | SRR7516405 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866113 | MDR-TB | lineage2.2.1 | None | SRR7645907 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662418 | MDR-TB | lineage2.2.1 | None | ERR5864890 | MDR-TB | lineage2.2.1 | None | SRR6832829 | MDR-TB | lineage2.2.1 | None | SRR24256186 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516950 | Pre-XDR-TB | lineage2.2.1 | gb | SRR1577806 | MDR-TB | lineage2.2.1 | None | ERR4276867 | XDR-TB | lineage2.2.1 | None | ERR2446119 | HR-TB | lineage3 | nl | SRR29440698 | Other | lineage2.2.1 | None | ERR13276383 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831816 | MDR-TB | lineage2.2.1 | None | SRR29539467 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275809 | Other | lineage2.2.1 | nl | ERR4276868 | XDR-TB | lineage2.2.1 | None | ERR5865947 | MDR-TB | lineage2.2.1 | None | ERR5865948 | MDR-TB | lineage2.2.1 | None | SRR13232657 | MDR-TB | lineage2.2.1 | None | ERR2516475 | MDR-TB | lineage4.1.3 | None | ERR5866114 | MDR-TB | lineage2.2.1 | None | ERR2307634 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284256 | HR-TB | lineage2.2.1 | None | SRR6257071 | Pre-XDR-TB | lineage2.2.1 | None | ERR551788 | MDR-TB | lineage2.2.1 | None | ERR11067399 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310922 | HR-TB | lineage2.2.1 | None | ERR11243547 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262116 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284390 | MDR-TB | lineage2.2.1 | None | ERR13284955 | MDR-TB | lineage4.7 | None | SRR14782520 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539454 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | SRR21690393 | Other | lineage2.2.1 | None | SRR5153220 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307774 | MDR-TB | lineage2.2.1 | None | ERR13284547 | MDR-TB | lineage2.2.1 | None | SRR24255938 | XDR-TB | lineage2.2.1 | None | ERR11798528 | MDR-TB | lineage2.2.1 | None | SRR24256366 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866313 | Pre-XDR-TB | lineage2.2.1 | None | ERR552847 | MDR-TB | lineage2.2.1 | None | SRR3724945 | Other | lineage2.2.1 | None | SRR18714834 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600462 | MDR-TB | lineage2.2.1 | None | ERR13289451 | HR-TB | lineage2.2.1 | None | SRR6831732 | MDR-TB | lineage2.2.1 | None | SRR29681306 | MDR-TB | lineage2.2.1 | None | SRR21887655 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796458 | MDR-TB | lineage3 | in | ERR4799388 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797557 | MDR-TB | lineage3 | in | ERR13284424 | MDR-TB | lineage2.2.1 | None | ERR13275898 | MDR-TB | lineage2.2.1 | None | SRR29681326 | MDR-TB | lineage2.2.1 | None | ERR13284319 | MDR-TB | lineage2.2.1 | None | ERR5865800 | MDR-TB | lineage2.2.1 | None | ERR13284687 | MDR-TB | lineage2.2.1 | None | ERR8774586 | MDR-TB | lineage2.2.1 | None | ERR7911226 | Pre-XDR-TB | lineage2.2.1 | md | ERR4830612 | MDR-TB | lineage2.2.1 | tm | ERR8665526 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516981 | Pre-XDR-TB | lineage2.2.1 | gb | SRR6785496 | MDR-TB | lineage2.2.1 | None | SRR7755709 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207307 | Pre-XDR-TB | lineage2.2.1 | None | ERR2677418 | Pre-XDR-TB | lineage2.2.1 | de | ERR2517047 | Pre-XDR-TB | lineage2.2.1 | gb | SRR5709831 | Other | lineage2.2.1 | th | SRR29539328 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307771 | MDR-TB | lineage2.2.1 | None | ERR8665723 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600561 | Other | lineage2.2.1;lineage4.8 | None | ERR13284750 | MDR-TB | lineage2.2.1 | None | ERR11488412 | Pre-XDR-TB | lineage4.8 | None | ERR2600577 | Pre-XDR-TB | lineage2.2.1 | None | ERR2677467 | Pre-XDR-TB | lineage2.2.1 | de | ERR4811362 | Pre-XDR-TB | lineage4.2.2 | cn | ERR12796616 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043526 | MDR-TB | lineage2.2.1 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR553027 | MDR-TB | lineage2.2.1 | None | ERR2600463 | MDR-TB | lineage2.2.1 | None | ERR4831404 | XDR-TB | lineage2.2.1 | de | SRR11662199 | MDR-TB | lineage2.2.1 | None | ERR5865946 | MDR-TB | lineage2.2.1 | None | ERR4830898 | MDR-TB | lineage2.2.1 | None | ERR11043693 | MDR-TB | lineage4.1.2.1 | None | SRR24255914 | Pre-XDR-TB | lineage2.2.1 | None | ERR11069124 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351538 | MDR-TB | lineage3 | None | ERR5866311 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539775 | MDR-TB | lineage2.2.1 | None | SRR13232458 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29681408 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600586 | MDR-TB | lineage2.2.1 | None | ERR2600593 | MDR-TB | lineage2.2.1 | None | ERR550625 | MDR-TB | lineage2.2.1 | None | SRR23316631 | Other | lineage2.2.1 | None | SRR24255908 | MDR-TB | lineage2.2.1 | None | SRR29539077 | MDR-TB | lineage2.2.1 | None | ERR13266881 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356662 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274009 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29539772 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865871 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539770 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865964 | MDR-TB | lineage2.2.1 | None | ERR9027228 | Pre-XDR-TB | lineage2.2.1 | None | ERR9896169 | Other | lineage2.2.1 | None | ERR552127 | MDR-TB | lineage2.2.1 | None | SRR7534980 | Other | lineage4.9 | None | SRR11662553 | MDR-TB | lineage2.2.1 | None | ERR551162 | MDR-TB | lineage2.2.1 | None | ERR13284088 | MDR-TB | lineage2.2.1 | None | SRR29539679 | MDR-TB | lineage2.2.1 | None | SRR29681254 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796868 | MDR-TB | lineage3 | in | SRR14807627 | XDR-TB | lineage2.2.1 | None | SRR29096239 | HR-TB | lineage1.2.2.2 | None | ERR4799647 | Pre-XDR-TB | lineage2.2.1 | in | ERR2600584 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600600 | MDR-TB | lineage2.2.1 | None | ERR4831196 | HR-TB | lineage3 | de | ERR13284609 | MDR-TB | lineage2.2.1 | None | ERR4800253 | MDR-TB | lineage3 | in | SRR1577830 | MDR-TB | lineage2.2.1 | None | SRR24256035 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488640 | MDR-TB | lineage4.8 | None | ERR3287497 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR13232456 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR18715490 | Pre-XDR-TB | lineage2.2.1 | None | ERR11774907 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088336 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256129 | MDR-TB | lineage2.2.1 | None | ERR4811161 | Pre-XDR-TB | lineage4.2.2 | cn | ERR8665722 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516404 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516798 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2307369 | MDR-TB | lineage2.2.1 | None | SRR18715441 | MDR-TB | lineage5.1.2 | None | SRR12199409 | Other | lineage1.2.2.2 | None | ERR11042969 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639746 | MDR-TB | lineage2.2.1 | None | ERR551746 | MDR-TB | lineage2.2.1 | None | DRR184906 | MDR-TB | lineage2.2.1 | vn | SRR16088264 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517433 | HR-TB | lineage3 | nl | ERR7737709 | MDR-TB | lineage2.2.1 | None | SRR24256313 | MDR-TB | lineage2.2.1 | None | ERR11243548 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285736 | MDR-TB | lineage2.2.1 | None | SRR29539121 | MDR-TB | lineage2.2.1 | None | SRR26937148 | MDR-TB | lineage2.2.1 | None | ERR2600576 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340151 | MDR-TB | lineage2.2.1 | None | ERR4830165 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600448 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653088 | MDR-TB | lineage4.1.2.1 | None | SRR24255883 | MDR-TB | lineage2.2.1 | None | ERR11043511 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050135 | Pre-XDR-TB | lineage2.2.1 | None | SRR24709926 | MDR-TB | lineage2.2.1 | None |
|---|
