Rv3854c - c.754_755dupGC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
23 RR-TB
3 HR-TB
72 MDR-TB
65 Pre-XDR-TB
0 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 40 |
| lineage3.1.2 | 1 |
| lineage3 | 20 |
| lineage4.3.3 | 29 |
| lineage2.2.1.1 | 6 |
| lineage4.8 | 20 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.8.1 | 5 |
| lineage2.2.1.1;lineage4.1.1.1 | 1 |
| lineage4.1.1.3 | 13 |
| lineage4.9 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4 | 4 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.2 | 5 |
| lineage4.1.1 | 2 |
| lineage4.1.2.1 | 3 |
| lineage4.2.1 | 1 |
| lineage4.5 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.2 | 2 |
| lineage4.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 166 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMN03246286 | MDR-TB | lineage2.2.1 | cn | SRR28351323 | Pre-XDR-TB | lineage3.1.2 | None | ERR5866214 | MDR-TB | lineage2.2.1 | None | SRR1144812 | Pre-XDR-TB | lineage3 | None | SRR13870387 | Pre-XDR-TB | lineage4.3.3 | None | SRR29274278 | MDR-TB | lineage4.3.3 | None | SRR3105778 | MDR-TB | lineage2.2.1.1 | None | SRR6484882 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062914 | RR-TB | lineage4.8 | None | SRR1146282 | Pre-XDR-TB | lineage3 | None | ERR13290295 | Pre-XDR-TB | lineage3 | None | SRR1010998 | RR-TB | lineage4.8 | None | SRR29539758 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539208 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276991 | Pre-XDR-TB | lineage2.2.1 | None | ERR133972 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR13258452 | Pre-XDR-TB | lineage2.2.1 | None | SRR1003112 | RR-TB | lineage4.8 | None | SRR1166714 | Pre-XDR-TB | lineage3 | None | SRR1003130 | RR-TB | lineage4.8 | None | SRR6458440 | Pre-XDR-TB | lineage4.3.3 | None | ERR2307582 | MDR-TB | lineage2.2.1 | None | ERR5865744 | MDR-TB | lineage4.3.3 | None | SRR1180336 | MDR-TB | lineage4.8.1 | None | ERR13267053 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539561 | Pre-XDR-TB | lineage4.3.3 | None | DRR130145 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510253 | RR-TB | lineage4.8 | pk | ERR2307419 | MDR-TB | lineage2.2.1 | None | ERR4798883 | MDR-TB | lineage2.2.1.1 | in | ERR4797417 | Pre-XDR-TB | lineage2.2.1.1;lineage4.1.1.1 | in | ERR4024620 | MDR-TB | lineage4.3.3 | None | SRR1162898 | Pre-XDR-TB | lineage3 | None | SRR28394176 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02360629 | RR-TB | lineage4.8 | ug | ERR2307709 | MDR-TB | lineage2.2.1 | None | SAMN02414857 | Pre-XDR-TB | lineage3 | se | SRR10808328 | MDR-TB | lineage4.9 | None | ERR2184309 | MDR-TB | lineage4.9 | pe | ERR760896 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR3287581 | MDR-TB | lineage4 | pe | ERR3287580 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28394237 | MDR-TB | lineage4.1.1.3 | None | ERR2707070 | MDR-TB | lineage4.6.1.2 | cd | ERR2707132 | MDR-TB | lineage4.6.1.2 | cd | ERR4812946 | MDR-TB | lineage4.3.3 | pe | ERR7911718 | MDR-TB | lineage2.2.1 | us | ERR5866516 | MDR-TB | lineage2.2.1 | None | ERR8975946 | MDR-TB | lineage4.3.4.2.1 | None | SRR11662648 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866213 | MDR-TB | lineage2.2.1 | None | SAMN02586082 | MDR-TB | lineage4.8.1 | za | ERR1654693 | MDR-TB | lineage4.6.1.2 | None | SRR1165503 | Pre-XDR-TB | lineage3 | None | SRR7755746 | Pre-XDR-TB | lineage4.3.3 | None | ERR2516732 | MDR-TB | lineage4.3.2 | pe | ERR13264938 | Pre-XDR-TB | lineage3 | None | SRR1140675 | RR-TB | lineage4.8 | None | SRR11662430 | HR-TB | lineage2.2.1 | None | ERR3287415 | MDR-TB | lineage4.1.1.3 | pe | ERR2184282 | RR-TB | lineage4.1.1 | pe | SRR1003131 | RR-TB | lineage4.8 | None | ERR4813094 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13290294 | Pre-XDR-TB | lineage3 | None | SRR10380173 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290296 | Pre-XDR-TB | lineage3 | None | SRR29231001 | MDR-TB | lineage4.6.1.2 | None | SRR1010997 | RR-TB | lineage4.8 | None | SRR22137409 | MDR-TB | lineage3 | None | ERR4827556 | MDR-TB | lineage2.2.1 | None | SRR1162998 | Pre-XDR-TB | lineage3 | None | ERR5865327 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394060 | Other | lineage4.1.2.1 | None | ERR13266853 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2307710 | MDR-TB | lineage2.2.1 | None | ERR5865128 | MDR-TB | lineage2.2.1 | None | ERR5865743 | MDR-TB | lineage4.3.3 | None | SRR7755667 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393619 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR7655465 | Other | lineage4.2.1 | None | ERR5866215 | MDR-TB | lineage2.2.1 | None | SRR29274280 | Pre-XDR-TB | lineage4 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | ERR13266700 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR26937079 | MDR-TB | lineage2.2.1 | None | SRR29231795 | MDR-TB | lineage4.6.1.2 | None | ERR13267494 | MDR-TB | lineage4.5 | None | SRR16370418 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28393947 | Pre-XDR-TB | lineage4 | None | ERR3287867 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR4812843 | Pre-XDR-TB | lineage4.3.3 | None | SRR28046121 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR775369 | MDR-TB | lineage4.3.3 | pe | SRR28394030 | MDR-TB | lineage4.3.2 | None | ERR4831435 | Pre-XDR-TB | lineage3 | None | ERR4813366 | Other | lineage4.3.3 | None | SRR1184041 | MDR-TB | lineage4.8.1 | None | ERR2516704 | Pre-XDR-TB | lineage4.3.2 | pe | ERR2516625 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516667 | MDR-TB | lineage4 | pe | ERR2516728 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516664 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516409 | Pre-XDR-TB | lineage4.3.2 | pe | SRR6824677 | MDR-TB | lineage2.2.1 | cn | ERR6865709 | MDR-TB | lineage4.3.3 | None | ERR1034703 | MDR-TB | lineage4.3.3 | pe | SRR10808359 | RR-TB | lineage4.1.1 | None | ERR5865326 | Pre-XDR-TB | lineage2.2.1 | None | ERR600658 | MDR-TB | lineage4.6.2.2 | None | SRR1003109 | RR-TB | lineage4.8 | None | SRR23310939 | HR-TB | lineage4.3.3 | None | SRR1162725 | Pre-XDR-TB | lineage3 | None | ERR13288749 | RR-TB | lineage2.2.1 | None | ERR2510399 | Pre-XDR-TB | lineage3 | pk | ERR3287400 | Pre-XDR-TB | lineage4.3.3 | pe | SRR833217 | Pre-XDR-TB | lineage4.2.2 | None | ERR5865130 | MDR-TB | lineage2.2.1 | None | ERR3287370 | MDR-TB | lineage4.3.3 | pe | SRR1165593 | Pre-XDR-TB | lineage3 | None | SRR13870403 | Pre-XDR-TB | lineage4.3.3 | None | SRR7755754 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813608 | MDR-TB | lineage4.3.3 | None | SRR1003111 | RR-TB | lineage4.8 | None | SRR1049657 | RR-TB | lineage4.8 | None | ERR5866500 | MDR-TB | lineage2.2.1 | None | ERR13290297 | Pre-XDR-TB | lineage3 | None | SRR7755670 | Pre-XDR-TB | lineage4.3.3 | None | SRR29289337 | Pre-XDR-TB | lineage3 | None | ERR9806886 | MDR-TB | lineage2.2.1 | None | SRR29051242 | MDR-TB | lineage4.3.3 | None | SRR29053129 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR15686445 | RR-TB | lineage4.8 | None | DRR130213 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797794 | MDR-TB | lineage2.2.1 | in | SRR1049656 | RR-TB | lineage4.8 | None | SRR1180364 | MDR-TB | lineage4.8.1 | None | ERR5865127 | MDR-TB | lineage2.2.1 | None | SRR1003110 | RR-TB | lineage4.8 | None | SRR10379945 | RR-TB | lineage4.8 | None | SAMN02360624 | RR-TB | lineage4.8 | ug | SAMN02360627 | RR-TB | lineage4.8 | ug | SAMN02381024 | RR-TB | lineage4.8 | ug | SAMN02360631 | RR-TB | lineage4.8 | ug | SAMN02414862 | Pre-XDR-TB | lineage3 | se | ERR5866515 | MDR-TB | lineage2.2.1 | None | SRR1011519 | Pre-XDR-TB | lineage4.2.2 | None | ERR3287733 | MDR-TB | lineage4.3.3 | pe | ERR3287747 | MDR-TB | lineage4.3.3 | pe | ERR3287883 | MDR-TB | lineage4.1.1.3 | pe | SRR28239885 | MDR-TB | lineage2.2.1 | None | SRR28393981 | MDR-TB | lineage4.1.2.1 | None | ERR7910858 | MDR-TB | lineage2.2.1 | pe | ERR4831466 | MDR-TB | lineage4.1.1.3 | None | ERR4813030 | MDR-TB | lineage4.3.3 | None | ERR4813049 | MDR-TB | lineage4.3.2 | None | SRR13449607 | MDR-TB | lineage4.3.3 | None | SRR18715045 | Pre-XDR-TB | lineage2.2.1 | None | ERR234631 | MDR-TB | lineage4.1.2.1 | ru | ERR4827969 | MDR-TB | lineage2.2.1 | None | SRR24256078 | MDR-TB | lineage4.2.1.1 | None | SRR1181003 | MDR-TB | lineage4.8.1 | None | ERR5865325 | MDR-TB | lineage2.2.1 | None | ERR5865129 | MDR-TB | lineage2.2.1 | None | ERR4796816 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799051 | HR-TB | lineage3 | in | SRR28498591 | Pre-XDR-TB | lineage4.3.3 | None |
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