Rv3854c - c.884delT
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
1 HR-TB
170 MDR-TB
100 Pre-XDR-TB
2 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 267 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.8 | 3 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage4.2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 276 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR552384 | MDR-TB | lineage2.2.1 | None | SRR24256224 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864469 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256250 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR4830897 | MDR-TB | lineage2.2.1 | None | SRR29539583 | Pre-XDR-TB | lineage2.2.1 | None | SRR23311076 | MDR-TB | lineage2.2.1 | None | ERR4828046 | MDR-TB | lineage2.2.1 | None | SRR23340018 | MDR-TB | lineage2.2.1 | None | SRR29539136 | Pre-XDR-TB | lineage2.2.1 | None | ERR553224 | MDR-TB | lineage2.2.1 | None | SRR24256382 | MDR-TB | lineage2.2.1 | None | SRR24255900 | MDR-TB | lineage2.2.1 | None | SRR24255985 | MDR-TB | lineage2.2.1 | None | ERR11044112 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088551 | MDR-TB | lineage2.2.1 | None | ERR5865161 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539428 | MDR-TB | lineage2.2.1 | None | ERR13286031 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255959 | MDR-TB | lineage2.2.1 | None | SRR29539605 | MDR-TB | lineage2.2.1 | None | ERR13276197 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539639 | MDR-TB | lineage2.2.1 | None | SRR29681381 | MDR-TB | lineage2.2.1 | None | ERR5864473 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539080 | MDR-TB | lineage2.2.1 | None | ERR13297996 | MDR-TB | lineage2.2.1 | None | ERR5866085 | MDR-TB | lineage2.2.1 | None | SRR24256283 | MDR-TB | lineage2.2.1 | None | SRR24256084 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714928 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088344 | MDR-TB | lineage2.2.1 | None | SRR24256029 | MDR-TB | lineage2.2.1 | None | SRR29681370 | MDR-TB | lineage2.2.1 | None | SRR29539712 | MDR-TB | lineage2.2.1 | None | SRR29539398 | MDR-TB | lineage2.2.1 | None | ERR13289428 | MDR-TB | lineage2.2.1 | None | SRR29016950 | MDR-TB | lineage4.8 | None | SRR14807542 | RR-TB | lineage2.2.1 | None | SRR29681283 | MDR-TB | lineage2.2.1 | None | SRR24256023 | MDR-TB | lineage2.2.1 | None | SRR29539138 | Pre-XDR-TB | lineage2.2.1 | None | SRR23938588 | MDR-TB | lineage2.2.1 | None | SRR21887741 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865159 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538956 | MDR-TB | lineage2.2.1 | None | SRR24256133 | MDR-TB | lineage2.2.1 | None | SRR29539007 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044128 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539532 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255907 | MDR-TB | lineage2.2.1 | None | SRR14801766 | MDR-TB | lineage2.2.1 | None | SRR13243566 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539096 | MDR-TB | lineage2.2.1 | None | SRR24256279 | MDR-TB | lineage2.2.1 | None | ERR11068175 | MDR-TB | lineage2.2.1 | None | SRR29539551 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539753 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715084 | Pre-XDR-TB | lineage2.2.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR29539815 | MDR-TB | lineage2.2.1 | None | SRR29539786 | MDR-TB | lineage2.2.1 | None | ERR5866356 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356791 | MDR-TB | lineage2.2.1 | None | ERR2600575 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255890 | MDR-TB | lineage2.2.1 | None | SRR24255904 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539713 | MDR-TB | lineage2.2.1 | None | ERR4863406 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539799 | MDR-TB | lineage2.2.1 | None | ERR13276199 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714917 | MDR-TB | lineage2.2.1 | None | ERR13289429 | MDR-TB | lineage2.2.1 | None | SRR11567806 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830131 | MDR-TB | lineage2.2.1 | None | SRR21736366 | MDR-TB | lineage2.2.1 | None | SRR1183064 | MDR-TB | lineage2.2.1 | None | SRR24256081 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255902 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802170 | Pre-XDR-TB | lineage2.2.1 | None | ERR017791 | RR-TB | lineage2.2.1 | None | SRR6832788 | MDR-TB | lineage2.2.1 | None | SRR6511591 | MDR-TB | lineage2.2.1 | None | SRR28351241 | MDR-TB | lineage2.2.1 | None | SRR8651604 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822339 | Pre-XDR-TB | lineage2.2.1 | de | SRR29539067 | MDR-TB | lineage2.2.1 | None | SRR29539501 | MDR-TB | lineage2.2.1 | None | SRR29539512 | Pre-XDR-TB | lineage2.2.1 | None | SRR13243562 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172183 | MDR-TB | lineage2.2.1 | None | SRR1172288 | MDR-TB | lineage2.2.1 | None | SRR29538878 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340095 | MDR-TB | lineage2.2.1 | None | ERR2600574 | MDR-TB | lineage2.2.1 | None | SRR6832412 | MDR-TB | lineage2.2.1 | None | SRR24256359 | MDR-TB | lineage2.2.1 | None | ERR12790857 | MDR-TB | lineage2.2.1 | None | ERR11068264 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276220 | MDR-TB | lineage2.2.1 | None | SRR24256233 | MDR-TB | lineage2.2.1 | None | SRR24256245 | MDR-TB | lineage2.2.1 | None | ERR12544147 | MDR-TB | lineage2.2.1 | None | ERR13291180 | XDR-TB | lineage2.2.1 | None | SRR24222913 | MDR-TB | lineage2.2.1 | None | SRR24256243 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256287 | MDR-TB | lineage2.2.1 | None | SRR24256320 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828108 | MDR-TB | lineage2.2.1 | None | ERR550824 | MDR-TB | lineage2.2.1 | None | ERR4827983 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256217 | MDR-TB | lineage2.2.1 | None | SRR24255878 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256048 | Pre-XDR-TB | lineage2.2.1 | None | SRR8651562 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11068581 | MDR-TB | lineage1.1.2 | None | ERR019865 | Other | lineage2.2.1;lineage4 | None | SRR18715312 | MDR-TB | lineage2.2.1 | None | SRR18715328 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714964 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714918 | MDR-TB | lineage2.2.1 | None | ERR5864470 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044092 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256215 | MDR-TB | lineage2.2.1 | None | SRR6831912 | MDR-TB | lineage2.2.1 | None | SRR6831995 | MDR-TB | lineage2.2.1 | None | SRR6832031 | MDR-TB | lineage2.2.1 | None | ERR13285855 | MDR-TB | lineage2.2.1 | None | ERR13290815 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044161 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715256 | MDR-TB | lineage2.2.1 | None | SRR29016986 | Pre-XDR-TB | lineage4.8 | None | SRR6832735 | MDR-TB | lineage2.2.1 | None | ERR5865740 | MDR-TB | lineage2.2.1 | None | SRR29538872 | MDR-TB | lineage2.2.1 | None | SRR29539808 | HR-TB | lineage2.2.1 | None | SRR29539083 | MDR-TB | lineage2.2.1 | None | ERR552383 | MDR-TB | lineage2.2.1 | None | ERR5865160 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276315 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256073 | MDR-TB | lineage2.2.1 | None | ERR13284510 | MDR-TB | lineage2.2.1 | None | SRR24256204 | Pre-XDR-TB | lineage2.2.1 | None | ERR552384_ERR552383 | MDR-TB | lineage2.2.1 | None | SRR28045916 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29539228 | MDR-TB | lineage2.2.1 | None | ERR13276200 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802168 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256291 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539423 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539419 | MDR-TB | lineage2.2.1 | None | SRR29539528 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538914 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256339 | MDR-TB | lineage2.2.1 | None | SRR29538913 | MDR-TB | lineage2.2.1 | None | SRR29538925 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255962 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538919 | MDR-TB | lineage2.2.1 | None | SRR29017528 | MDR-TB | lineage4.8 | None | SRR29539537 | MDR-TB | lineage2.2.1 | None | SRR29539075 | MDR-TB | lineage2.2.1 | None | ERR12790848 | MDR-TB | lineage2.2.1 | None | ERR13284603 | MDR-TB | lineage2.2.1 | None | SRR29539194 | MDR-TB | lineage2.2.1 | None | SRR29539099 | MDR-TB | lineage2.2.1 | None | SRR6832063 | MDR-TB | lineage2.2.1 | None | SRR29538922 | MDR-TB | lineage2.2.1 | None | ERR2600548 | MDR-TB | lineage2.2.1 | None | ERR11081597 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539846 | MDR-TB | lineage2.2.1 | None | SRR24256247 | MDR-TB | lineage2.2.1 | None | ERR5866355 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256104 | MDR-TB | lineage2.2.1 | None | SRR24256326 | MDR-TB | lineage2.2.1 | None | SRR24256288 | MDR-TB | lineage2.2.1 | None | SRR29539582 | MDR-TB | lineage2.2.1 | None | SAMN02628526 | MDR-TB | lineage2.2.1 | ir | SRR29538880 | MDR-TB | lineage2.2.1 | None | SRR29539813 | MDR-TB | lineage2.2.1 | None | ERR550855 | MDR-TB | lineage2.2.1 | None | ERR12790856 | MDR-TB | lineage2.2.1 | None | ERR12790849 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351240 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4829381 | MDR-TB | lineage2.2.1 | it | ERR4829831 | MDR-TB | lineage2.2.1;lineage4.2.1 | it | SRR24256240 | MDR-TB | lineage2.2.1 | None | ERR2677387 | Pre-XDR-TB | lineage2.2.1 | de | ERR2509884 | MDR-TB | lineage2.2.1 | gb | ERR11082648 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828012 | MDR-TB | lineage2.2.1 | None | ERR13276195 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538916 | MDR-TB | lineage2.2.1 | None | ERR5865311 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801860 | MDR-TB | lineage2.2.1 | None | SRR6832097 | MDR-TB | lineage2.2.1 | None | SRR28435001 | Pre-XDR-TB | lineage2.2.1 | None | SRR13120447 | MDR-TB | lineage2.2.1 | None | SRR11567805 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256056 | MDR-TB | lineage2.2.1 | None | ERR5864471 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864468 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831918 | MDR-TB | lineage2.2.1 | None | SRR16087921 | MDR-TB | lineage2.2.1 | None | SRR22048397 | MDR-TB | lineage2.2.1 | None | SRR14782230 | MDR-TB | lineage2.2.1 | None | SRR24255932 | MDR-TB | lineage2.2.1 | None | ERR4828050 | MDR-TB | lineage2.2.1 | None | SRR16087916 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044096 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068497 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256021 | MDR-TB | lineage2.2.1 | None | SRR16088592 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538977 | MDR-TB | lineage2.2.1 | None | SRR23310900 | MDR-TB | lineage2.2.1 | None | SRR29539054 | MDR-TB | lineage2.2.1 | None | SRR1180141 | MDR-TB | lineage2.2.1 | None | ERR5864472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827736 | MDR-TB | lineage2.2.1 | None | ERR117663 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256027 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044156 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539496 | MDR-TB | lineage2.2.1 | None | SRR29539130 | MDR-TB | lineage2.2.1 | None | SRR29538870 | MDR-TB | lineage2.2.1 | None | SRR29539792 | MDR-TB | lineage2.2.1 | None | SRR6831899 | MDR-TB | lineage2.2.1 | None | SRR29681245 | MDR-TB | lineage2.2.1 | None | ERR13276212 | Pre-XDR-TB | lineage2.2.1 | None | ERR551628 | MDR-TB | lineage2.2.1 | None | SRR29539538 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831773 | MDR-TB | lineage2.2.1 | None | SRR29539754 | MDR-TB | lineage2.2.1 | None | SRR29539720 | MDR-TB | lineage2.2.1 | None | SRR29539363 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276878 | MDR-TB | lineage2.2.1 | None | SRR29539107 | MDR-TB | lineage2.2.1 | None | SRR29681232 | MDR-TB | lineage2.2.1 | None | ERR550854 | MDR-TB | lineage2.2.1 | None | SRR16088064 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822412 | MDR-TB | lineage2.2.1 | ua | ERR4830067 | MDR-TB | lineage2.2.1 | None | ERR5865310 | Pre-XDR-TB | lineage2.2.1 | None | ERR2864238 | MDR-TB | lineage2.2.1 | pt | ERR11068835 | MDR-TB | lineage2.2.1 | None | ERR2864255 | MDR-TB | lineage2.2.1 | pt | ERR2864228 | MDR-TB | lineage2.2.1 | pt | ERR12790855 | MDR-TB | lineage2.2.1 | None | ERR5865308 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866084 | MDR-TB | lineage2.2.1 | None | SRR29539781 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865309 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827787 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2534612 | MDR-TB | lineage2.2.1 | uz | SRR2100227 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232546 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034819 | MDR-TB | lineage2.2.1 | pt | SRR6832135 | MDR-TB | lineage2.2.1 | None | ERR1034838 | MDR-TB | lineage2.2.1 | pt | ERR10762313 | MDR-TB | lineage2.2.1 | None | ERR13284967 | MDR-TB | lineage2.2.1 | None | ERR5866354 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539445 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832434 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255898 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827924 | MDR-TB | lineage2.2.1 | None | ERR4827418 | MDR-TB | lineage2.2.1 | None | ERR2600603 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256076 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715061 | MDR-TB | lineage2.2.1 | None | SRR29539645 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538976 | MDR-TB | lineage2.2.1 | None | SRR6832460 | MDR-TB | lineage2.2.1 | None | SRR24256132 | MDR-TB | lineage2.2.1 | None | ERR2600573 | MDR-TB | lineage2.2.1 | None | SRR28170755 | XDR-TB | lineage2.2.1 | None | ERR9027234 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
